Published in Bioinformatics on April 11, 2012
RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. Am J Hum Genet (2013) 1.82
A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations. PLoS Genet (2015) 1.43
Strong Selection at MHC in Mexicans since Admixture. PLoS Genet (2016) 1.41
Intrahepatic Cholestasis of Pregnancy (ICP) in U.S. Latinas and Chileans: Clinical features, Ancestry Analysis, and Admixture Mapping. PLoS One (2015) 1.40
Reconstructing Native American migrations from whole-genome and whole-exome data. PLoS Genet (2013) 1.34
Genome-wide association study of ancestry-specific TB risk in the South African Coloured population. Hum Mol Genet (2013) 1.25
Genetic ancestry influences asthma susceptibility and lung function among Latinos. J Allergy Clin Immunol (2014) 1.14
Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinformatics (2013) 1.11
Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture. Am J Hum Genet (2014) 1.10
Genome-wide association study and admixture mapping identify different asthma-associated loci in Latinos: the Genes-environments & Admixture in Latino Americans study. J Allergy Clin Immunol (2014) 1.10
The lengths of admixture tracts. Genetics (2014) 1.06
Amerindian-specific regions under positive selection harbour new lipid variants in Latinos. Nat Commun (2014) 1.02
An overview of STRUCTURE: applications, parameter settings, and supporting software. Front Genet (2013) 1.02
Mapping the human reference genome's missing sequence by three-way admixture in Latino genomes. Am J Hum Genet (2013) 1.01
A genome-wide association study of bronchodilator response in Latinos implicates rare variants. J Allergy Clin Immunol (2013) 0.93
Detecting structure of haplotypes and local ancestry. Genetics (2014) 0.92
Accurate inference of local phased ancestry of modern admixed populations. Sci Rep (2014) 0.92
Enhanced methods for local ancestry assignment in sequenced admixed individuals. PLoS Comput Biol (2014) 0.91
Origin of the PSEN1 E280A mutation causing early-onset Alzheimer's disease. Alzheimers Dement (2013) 0.90
Enhanced localization of genetic samples through linkage-disequilibrium correction. Am J Hum Genet (2013) 0.89
The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice. Plant Physiol (2014) 0.89
Overview of admixture mapping. Curr Protoc Hum Genet (2013) 0.88
Whole-genome sequencing of individuals from a founder population identifies candidate genes for asthma. PLoS One (2014) 0.88
Determining ancestry proportions in complex admixture scenarios in South Africa using a novel proxy ancestry selection method. PLoS One (2013) 0.85
Local and global ancestry inference and applications to genetic association analysis for admixed populations. Genet Epidemiol (2014) 0.85
Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation. Genetics (2015) 0.84
Effects of sample selection bias on the accuracy of population structure and ancestry inference. G3 (Bethesda) (2014) 0.83
Adapt-Mix: learning local genetic correlation structure improves summary statistics-based analyses. Bioinformatics (2015) 0.83
Spatial localization of recent ancestors for admixed individuals. G3 (Bethesda) (2014) 0.83
Functional mechanisms underlying pleiotropic risk alleles at the 19p13.1 breast-ovarian cancer susceptibility locus. Nat Commun (2016) 0.82
The time and place of European admixture in Ashkenazi Jewish history. PLoS Genet (2017) 0.82
Genomic adaptation of admixed dairy cattle in East Africa. Front Genet (2014) 0.82
Admixture mapping identifies a quantitative trait locus associated with FEV1/FVC in the COPDGene Study. Genet Epidemiol (2014) 0.82
HLA-DRB1-associated rheumatoid arthritis risk at multiple levels in African Americans: hierarchical classification systems, amino acid positions, and residues. Arthritis Rheumatol (2014) 0.82
Local Ancestry Inference in a Large US-Based Hispanic/Latino Study: Hispanic Community Health Study/Study of Latinos (HCHS/SOL). G3 (Bethesda) (2016) 0.82
Admixture Mapping of Subclinical Atherosclerosis and Subsequent Clinical Events Among African Americans in 2 Large Cohort Studies. Circ Cardiovasc Genet (2017) 0.80
Using multi-way admixture mapping to elucidate TB susceptibility in the South African Coloured population. BMC Genomics (2014) 0.80
Inferring parental genomic ancestries using pooled semi-Markov processes. Bioinformatics (2015) 0.80
Genome-wide association study and admixture mapping reveal new loci associated with total IgE levels in Latinos. J Allergy Clin Immunol (2014) 0.79
Human Demographic History Impacts Genetic Risk Prediction across Diverse Populations. Am J Hum Genet (2017) 0.79
Genetic structure characterization of Chileans reflects historical immigration patterns. Nat Commun (2015) 0.79
Genetic Investigation Into the Differential Risk of Atrial Fibrillation Among Black and White Individuals. JAMA Cardiol (2016) 0.79
Association of NOD2 and IL23R with inflammatory bowel disease in Puerto Rico. PLoS One (2014) 0.78
Use of admixture and association for detection of quantitative trait loci in the Type 2 Diabetes Genetic Exploration by Next-Generation Sequencing in Ethnic Samples (T2D-GENES) study. BMC Proc (2014) 0.78
Admixture mapping analysis in the context of GWAS with GAW18 data. BMC Proc (2014) 0.78
Differential methylation between ethnic sub-groups reflects the effect of genetic ancestry and environmental exposures. Elife (2017) 0.77
Detecting hybridization using ancient DNA. Mol Ecol (2016) 0.77
Racial Differences in Left Atrial Size: Results from the Coronary Artery Risk Development in Young Adults (CARDIA) Study. PLoS One (2016) 0.77
Admixture mapping of coronary artery calcification in African Americans from the NHLBI family heart study. BMC Genet (2015) 0.77
Genetic and socioeconomic study of mate choice in Latinos reveals novel assortment patterns. Proc Natl Acad Sci U S A (2015) 0.77
De novo inference of stratification and local admixture in sequencing studies. BMC Bioinformatics (2013) 0.77
Inferring ancestry from population genomic data and its applications. Front Genet (2014) 0.76
Phenotypic variance explained by local ancestry in admixed African Americans. Front Genet (2015) 0.76
Ancestry variation and footprints of natural selection along the genome in Latin American populations. Sci Rep (2016) 0.76
Leveraging local ancestry to detect gene-gene interactions in genome-wide data. BMC Genet (2015) 0.75
Admixture analysis of spontaneous hepatitis C virus clearance in individuals of African descent. Genes Immun (2014) 0.75
Ancestry-informative markers for African Americans based on the Affymetrix Pan-African genotyping array. PeerJ (2014) 0.75
Leveraging ancestry to improve causal variant identification in exome sequencing for monogenic disorders. Eur J Hum Genet (2015) 0.75
ALDsuite: Dense marker MALD using principal components of ancestral linkage disequilibrium. BMC Genet (2015) 0.75
Genome-wide survey in African Americans demonstrates potential epistasis of fitness in the human genome. Genet Epidemiol (2016) 0.75
Mapping asthma-associated variants in admixed populations. Front Genet (2015) 0.75
A Generalized Sequential Bonferroni Procedure for GWAS in Admixed Populations Incorporating Admixture Mapping Information into Association Tests. Hum Hered (2015) 0.75
A combined association test for rare variants using family and case-control data. BMC Proc (2016) 0.75
A Hidden Markov Model Approach for Simultaneously Estimating Local Ancestry and Admixture Time Using Next Generation Sequence Data in Samples of Arbitrary Ploidy. PLoS Genet (2017) 0.75
Investigating the case of human nose shape and climate adaptation. PLoS Genet (2017) 0.75
Global and local ancestry in African-Americans: Implications for Alzheimer's disease risk. Alzheimers Dement (2015) 0.75
A Continuous Correlated Beta Process Model for Genetic Ancestry in Admixed Populations. PLoS One (2016) 0.75
Assigning breed origin to alleles in crossbred animals. Genet Sel Evol (2016) 0.75
Local Ancestry and Clinical Cardiovascular Events Among African Americans From the Atherosclerosis Risk in Communities Study. J Am Heart Assoc (2017) 0.75
Coexpression and expression quantitative trait loci analyses of the angiogenesis gene-gene interaction network in prostate cancer. Transl Cancer Res (2016) 0.75
A haplotype map of the human genome. Nature (2005) 105.70
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet (2006) 28.32
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics (2003) 17.73
Methods for high-density admixture mapping of disease genes. Am J Hum Genet (2004) 12.02
Design and analysis of admixture mapping studies. Am J Hum Genet (2004) 7.20
Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet (2009) 6.36
Reconstructing genetic ancestry blocks in admixed individuals. Am J Hum Genet (2006) 5.92
Estimating local ancestry in admixed populations. Am J Hum Genet (2008) 5.90
A whole-genome admixture scan finds a candidate locus for multiple sclerosis susceptibility. Nat Genet (2005) 5.02
Ancestry and pharmacogenomics of relapse in acute lymphoblastic leukemia. Nat Genet (2011) 4.93
A genomewide admixture map for Latino populations. Am J Hum Genet (2007) 4.71
GERBIL: Genotype resolution and block identification using likelihood. Proc Natl Acad Sci U S A (2004) 4.36
A genomewide admixture mapping panel for Hispanic/Latino populations. Am J Hum Genet (2007) 3.85
Latino populations: a unique opportunity for the study of race, genetics, and social environment in epidemiological research. Am J Public Health (2005) 3.50
A genomewide single-nucleotide-polymorphism panel for Mexican American admixture mapping. Am J Hum Genet (2007) 3.39
Colloquium paper: genome-wide patterns of population structure and admixture among Hispanic/Latino populations. Proc Natl Acad Sci U S A (2010) 3.20
Identifying signatures of natural selection in Tibetan and Andean populations using dense genome scan data. PLoS Genet (2010) 3.11
The landscape of recombination in African Americans. Nature (2011) 3.06
Recent genetic selection in the ancestral admixture of Puerto Ricans. Am J Hum Genet (2007) 2.72
Inference of locus-specific ancestry in closely related populations. Bioinformatics (2009) 2.54
Genomic ancestry of North Africans supports back-to-Africa migrations. PLoS Genet (2012) 2.51
Lower bronchodilator responsiveness in Puerto Rican than in Mexican subjects with asthma. Am J Respir Crit Care Med (2003) 2.39
New approaches to disease mapping in admixed populations. Nat Rev Genet (2011) 2.22
Linkage analysis of a complex disease through use of admixed populations. Am J Hum Genet (2004) 2.21
Effect of genetic divergence in identifying ancestral origin using HAPAA. Genome Res (2008) 2.15
Enhanced statistical tests for GWAS in admixed populations: assessment using African Americans from CARe and a Breast Cancer Consortium. PLoS Genet (2011) 1.94
Ancestral components of admixed genomes in a Mexican cohort. PLoS Genet (2011) 1.67
Recombination rates in admixed individuals identified by ancestry-based inference. Nat Genet (2011) 1.64
Genotype error detection using Hidden Markov Models of haplotype diversity. J Comput Biol (2008) 1.57
Whole-genome patterns of common DNA variation in three human populations. Science (2005) 21.22
Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. Nat Genet (2011) 13.25
A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet (2006) 12.45
Identifying personal genomes by surname inference. Science (2013) 10.79
Daily versus as-needed corticosteroids for mild persistent asthma. N Engl J Med (2005) 7.61
Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci U S A (2002) 7.27
Estimating local ancestry in admixed populations. Am J Hum Genet (2008) 5.90
Use of regularly scheduled albuterol treatment in asthma: genotype-stratified, randomised, placebo-controlled cross-over trial. Lancet (2004) 5.01
Epidemiology of lung cancer: ACCP evidence-based clinical practice guidelines (2nd edition). Chest (2007) 4.29
Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. J Infect Dis (2007) 4.16
Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. Nat Genet (2011) 3.68
Significant variability in response to inhaled corticosteroids for persistent asthma. J Allergy Clin Immunol (2002) 3.66
Leveraging the HapMap correlation structure in association studies. Am J Hum Genet (2007) 3.57
Latino populations: a unique opportunity for the study of race, genetics, and social environment in epidemiological research. Am J Public Health (2005) 3.50
Genetic ancestry in lung-function predictions. N Engl J Med (2010) 3.30
TLR3- and Th2 cytokine-dependent production of thymic stromal lymphopoietin in human airway epithelial cells. J Immunol (2007) 3.22
Population stratification confounds genetic association studies among Latinos. Hum Genet (2005) 3.19
Design of the Coronary ARtery DIsease Genome-Wide Replication And Meta-Analysis (CARDIoGRAM) Study: A Genome-wide association meta-analysis involving more than 22 000 cases and 60 000 controls. Circ Cardiovasc Genet (2010) 3.15
Inhibition of activated pericentromeric SINE/Alu repeat transcription in senescent human adult stem cells reinstates self-renewal. Cell Cycle (2011) 3.11
Genetic admixture and asthma-related phenotypes in Mexican American and Puerto Rican asthmatics. Genet Epidemiol (2005) 3.03
Smoking affects response to inhaled corticosteroids or leukotriene receptor antagonists in asthma. Am J Respir Crit Care Med (2007) 2.81
Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma. Nat Genet (2009) 2.73
Recent genetic selection in the ancestral admixture of Puerto Ricans. Am J Hum Genet (2007) 2.72
Pharmacogenetic differences in response to albuterol between Puerto Ricans and Mexicans with asthma. Am J Respir Crit Care Med (2004) 2.62
Genomic privacy and limits of individual detection in a pool. Nat Genet (2009) 2.60
Inference of locus-specific ancestry in closely related populations. Bioinformatics (2009) 2.54
A genome-wide association study on African-ancestry populations for asthma. J Allergy Clin Immunol (2009) 2.53
The 1000 Genomes Project: new opportunities for research and social challenges. Genome Med (2010) 2.43
Lower bronchodilator responsiveness in Puerto Rican than in Mexican subjects with asthma. Am J Respir Crit Care Med (2003) 2.39
Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32. Nat Genet (2010) 2.37
PCA-correlated SNPs for structure identification in worldwide human populations. PLoS Genet (2007) 2.36
On the inference of ancestries in admixed populations. Genome Res (2008) 2.27
Genome-wide association study implicates chromosome 9q21.31 as a susceptibility locus for asthma in mexican children. PLoS Genet (2009) 2.27
Systemic effect comparisons of six inhaled corticosteroid preparations. Am J Respir Crit Care Med (2002) 2.24
New approaches to disease mapping in admixed populations. Nat Rev Genet (2011) 2.22
Using extended genealogy to estimate components of heritability for 23 quantitative and dichotomous traits. PLoS Genet (2013) 2.19
Comparison of three methods to estimate genetic ancestry and control for stratification in genetic association studies among admixed populations. Hum Genet (2005) 2.19
ORMDL3 gene is associated with asthma in three ethnically diverse populations. Am J Respir Crit Care Med (2008) 2.18
Human cholesterol 7alpha-hydroxylase (CYP7A1) deficiency has a hypercholesterolemic phenotype. J Clin Invest (2002) 2.12
Safety of budesonide inhalation suspension in infants aged six to twelve months with mild to moderate persistent asthma or recurrent wheeze. J Pediatr (2005) 2.09
Higher levels of neanderthal ancestry in East Asians than in Europeans. Genetics (2013) 2.06
A model-based approach for analysis of spatial structure in genetic data. Nat Genet (2012) 2.02
Leveraging genetic variability across populations for the identification of causal variants. Am J Hum Genet (2010) 2.00
History of click-speaking populations of Africa inferred from mtDNA and Y chromosome genetic variation. Mol Biol Evol (2007) 2.00
Efficient reconstruction of haplotype structure via perfect phylogeny. J Bioinform Comput Biol (2003) 1.96
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol (2014) 1.95
Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque. Nat Genet (2011) 1.92
Epithelium: at the interface of innate and adaptive immune responses. J Allergy Clin Immunol (2007) 1.88
Genome-wide screen for asthma in Puerto Ricans: evidence for association with 5q23 region. Hum Genet (2008) 1.81
Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations. J Natl Cancer Inst (2013) 1.81
Ancestry-related assortative mating in Latino populations. Genome Biol (2009) 1.79
In vitro susceptibility to rhinovirus infection is greater for bronchial than for nasal airway epithelial cells in human subjects. J Allergy Clin Immunol (2009) 1.78
Epidemiology of lung cancer: Diagnosis and management of lung cancer, 3rd ed: American College of Chest Physicians evidence-based clinical practice guidelines. Chest (2013) 1.77
Childhood obesity and asthma control in the GALA II and SAGE II studies. Am J Respir Crit Care Med (2013) 1.75
Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. Am J Hum Genet (2012) 1.75
Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas. PLoS Genet (2012) 1.74
A randomization test for controlling population stratification in whole-genome association studies. Am J Hum Genet (2007) 1.73
Estimating and interpreting FST: the impact of rare variants. Genome Res (2013) 1.73
Evidence of widespread selection on standing variation in Europe at height-associated SNPs. Nat Genet (2012) 1.71
Accurate estimation of expression levels of homologous genes in RNA-seq experiments. J Comput Biol (2011) 1.69
Targets of balancing selection in the human genome. Mol Biol Evol (2009) 1.69
Effectiveness of strategies to recruit underrepresented populations into cancer clinical trials. Clin Trials (2006) 1.68
Reconstructing the population genetic history of the Caribbean. PLoS Genet (2013) 1.68
Provider roles in the recruitment of underrepresented populations to cancer clinical trials. Cancer (2007) 1.67
Recombination rates in admixed individuals identified by ancestry-based inference. Nat Genet (2011) 1.64
Socioeconomic status and childhood asthma in urban minority youths. The GALA II and SAGE II studies. Am J Respir Crit Care Med (2013) 1.64
Genotype is a stronger determinant than sex of the mouse gut microbiota. Microb Ecol (2010) 1.63
Polymorphisms in the estrogen receptor 1 and vitamin C and matrix metalloproteinase gene families are associated with susceptibility to lymphoma. PLoS One (2008) 1.61
Ethnic-specific differences in bronchodilator responsiveness among African Americans, Puerto Ricans, and Mexicans with asthma. J Asthma (2007) 1.57