Published in PLoS One on July 09, 2012
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The hive bee to forager transition in honeybee colonies: the double repressor hypothesis. J Theor Biol (2003) 2.14
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A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers. BMC Genomics (2008) 2.07
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A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics (2011) 2.03
Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates. BMC Genomics (2007) 1.77
The Genomic HyperBrowser: inferential genomics at the sequence level. Genome Biol (2010) 1.74
Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling. Nucleic Acids Res (2006) 1.74
Statistical epistasis is a generic feature of gene regulatory networks. Genetics (2006) 1.72
Profound influence of microarray scanner characteristics on gene expression ratios: analysis and procedure for correction. BMC Genomics (2004) 1.60
Performance comparison of four exome capture systems for deep sequencing. BMC Genomics (2014) 1.51
Analysis of repeatability in spotted cDNA microarrays. Nucleic Acids Res (2002) 1.50
Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance. BMC Genomics (2003) 1.35
Genetic epidemiology of BRCA mutations--family history detects less than 50% of the mutation carriers. Eur J Cancer (2007) 1.32
The majority of viral-cellular fusion transcripts in cervical carcinomas cotranscribe cellular sequences of known or predicted genes. Cancer Res (2008) 1.30
Gene-expression profiling in breast cancer. Lancet (2005) 1.30
Aquaporin-4 regulates extracellular space volume dynamics during high-frequency synaptic stimulation: a gene deletion study in mouse hippocampus. Glia (2012) 1.29
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer. PLoS One (2013) 1.22
Threshold-dominated regulation hides genetic variation in gene expression networks. BMC Syst Biol (2007) 1.21
The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Res (2013) 1.20
Life history shapes trait heredity by accumulation of loss-of-function alleles in yeast. Mol Biol Evol (2012) 1.20
Limitations of mRNA amplification from small-size cell samples. BMC Genomics (2005) 1.19
GeneCount: genome-wide calculation of absolute tumor DNA copy numbers from array comparative genomic hybridization data. Genome Biol (2008) 1.18
The human genomic melting map. PLoS Comput Biol (2007) 1.14
Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma. PLoS One (2012) 1.13
Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data. BMC Bioinformatics (2003) 1.13
Gene expression analysis in blood cells in response to unmodified and 2'-modified siRNAs reveals TLR-dependent and independent effects. J Mol Biol (2006) 1.12
Astrocytic mechanisms explaining neural-activity-induced shrinkage of extraneuronal space. PLoS Comput Biol (2009) 1.12
MArray: analysing single, replicated or reversed microarray experiments. Bioinformatics (2002) 1.08
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements. Nucleic Acids Res (2013) 1.08
Activation of NF-kappaB by extracellular S100A4: analysis of signal transduction mechanisms and identification of target genes. Int J Cancer (2008) 1.05
The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts. Nucleic Acids Res (2009) 1.04
Life-history evolution and the polyphenic regulation of somatic maintenance and survival. Q Rev Biol (2013) 1.03
When parameters in dynamic models become phenotypes: a case study on flesh pigmentation in the chinook salmon (Oncorhynchus tshawytscha). Genetics (2008) 1.02
Genotype-Phenotype Map Characteristics of an In silico Heart Cell. Front Physiol (2011) 1.00
Ancient evolutionary trade-offs between yeast ploidy states. PLoS Genet (2013) 1.00
Validation of oligoarrays for quantitative exploration of the transcriptome. BMC Genomics (2008) 0.99
Upregulation of stem cell genes in multidrug resistant K562 leukemia cells. Leuk Res (2009) 0.99
S100A4 regulates membrane induced activation of matrix metalloproteinase-2 in osteosarcoma cells. Clin Exp Metastasis (2003) 0.98
The genotype-phenotype relationship in multicellular pattern-generating models--the neglected role of pattern descriptors. BMC Syst Biol (2009) 0.98
Parallel nanoliter detection of cancer markers using polymer microchips. Lab Chip (2005) 0.98
Identifying elemental genomic track types and representing them uniformly. BMC Bioinformatics (2011) 0.96
Substantial loss of conserved and gain of novel MicroRNA families in flatworms. Mol Biol Evol (2013) 0.96
Constitutive expression of the AP-1 transcription factors c-jun, junD, junB, and c-fos and the marginal zone B-cell transcription factor Notch2 in splenic marginal zone lymphoma. J Mol Diagn (2004) 0.95
Hierarchical cluster-based partial least squares regression (HC-PLSR) is an efficient tool for metamodelling of nonlinear dynamic models. BMC Syst Biol (2011) 0.95
Allele interaction--single locus genetics meets regulatory biology. PLoS One (2010) 0.94
Nonlinear regulation enhances the phenotypic expression of trans-acting genetic polymorphisms. BMC Syst Biol (2007) 0.94
Bridging the genotype-phenotype gap: what does it take? J Physiol (2013) 0.93
Response of malignant B lymphocytes to ionizing radiation: gene expression and genotype. Int J Cancer (2005) 0.92
Parameters in dynamic models of complex traits are containers of missing heritability. PLoS Comput Biol (2012) 0.91
Dependence of spontaneous neuronal firing and depolarisation block on astroglial membrane transport mechanisms. J Comput Neurosci (2011) 0.91
Carotenoid dynamics in Atlantic salmon. BMC Biol (2006) 0.91
Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles. Nucleic Acids Res (2005) 0.90
The regulatory basis of melanogenic switching. J Theor Biol (2002) 0.89
The semantic web and biology. Drug Discov Today (2002) 0.89
Speed-up of DNA melting algorithm with complete nearest neighbor properties. Biopolymers (2003) 0.89
Protein arrays: a versatile toolbox for target identification and monitoring of patient immune responses. Methods Mol Biol (2007) 0.88
Combining network modeling and gene expression microarray analysis to explore the dynamics of Th1 and Th2 cell regulation. PLoS Comput Biol (2010) 0.87
Performance comparison of multiple microarray platforms for gene expression profiling. Methods Mol Biol (2012) 0.86
MGraph: graphical models for microarray data analysis. Bioinformatics (2003) 0.86
Differential display analysis of breast carcinoma cells enriched by immunomagnetic target cell selection: gene expression profiles in bone marrow target cells. Int J Cancer (2002) 0.85
Analysis of the humoral immune response to immunoselected phage-displayed peptides by a microarray-based method. Proteomics (2004) 0.84
Large-scale inference of the point mutational spectrum in human segmental duplications. BMC Genomics (2009) 0.83
Mapping of oxidative stress responses of human tumor cells following photodynamic therapy using hexaminolevulinate. BMC Genomics (2007) 0.82
Enhancing nucleic acid delivery by photochemical internalization. Ther Deliv (2013) 0.82
Real-time nucleic acid sequence-based amplification in nanoliter volumes. Anal Chem (2004) 0.82
Monotonicity is a key feature of genotype-phenotype maps. Front Genet (2013) 0.82
Is the brain water channel aquaporin-4 a pathogenetic factor in idiopathic intracranial hypertension? Results from a combined clinical and genetic study in a Norwegian cohort. Acta Ophthalmol (2011) 0.81
FigSearch: a figure legend indexing and classification system. Bioinformatics (2004) 0.81
The detection of hamster connexins: a comparison of expression profiles with wild-type mouse and the cancer-prone Min mouse. Cell Commun Adhes (2005) 0.81
Multi-way metamodelling facilitates insight into the complex input-output maps of nonlinear dynamic models. BMC Syst Biol (2012) 0.81
Segmentation of DNA sequences into twostate regions and melting fork regions. J Phys Condens Matter (2008) 0.81
Effect of regulatory architecture on broad versus narrow sense heritability. PLoS Comput Biol (2013) 0.81
Propagation of genetic variation in gene regulatory networks. Physica D (2013) 0.80
From proteomes to complexomes in the era of systems biology. Proteomics (2014) 0.80
Predicting physical interactions between protein complexes. Mol Cell Proteomics (2013) 0.80
Evaluation of various polyethylenimine formulations for light-controlled gene silencing using small interfering RNA molecules. Oligonucleotides (2008) 0.80
Impact of DNA physical properties on local sequence bias of human mutation. Hum Mutat (2010) 0.79
Determination of hereditary mutations in the BRCA1 gene using archived serum samples and capillary electrophoresis. Anal Chem (2004) 0.79
Transcriptome changes in a colon adenocarcinoma cell line in response to photochemical treatment as used in photochemical internalisation (PCI). FEBS Lett (2006) 0.78
Immunological network signatures of cancer progression and survival. BMC Med Genomics (2011) 0.78
Methods for quantitation of gene expression. Front Biosci (Landmark Ed) (2009) 0.78
Light-controlled modulation of gene expression using polyamidoamine formulations. Nucleic Acid Ther (2013) 0.78
Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways. Neuroimage (2012) 0.78
Cyclodextrin-containing polymer delivery system for light-directed siRNA gene silencing. Oligonucleotides (2010) 0.78
The mathematics of tanning. BMC Syst Biol (2009) 0.77
A primer on the current state of microarray technologies. Methods Mol Biol (2012) 0.77
The differential disease regulome. BMC Genomics (2011) 0.77
MUTYH Mutations Do Not Cause HNPCC or Late Onset Familial Colorectal Cancer. Hered Cancer Clin Pract (2006) 0.77