Published in Methods Mol Biol on January 01, 2013
Feedback from network states generates variability in a probabilistic olfactory circuit. Cell (2015) 2.28
Computational Recipe for Efficient Description of Large-Scale Conformational Changes in Biomolecular Systems. J Chem Theory Comput (2014) 0.84
Recognition of the HIV capsid by the TRIM5α restriction factor is mediated by a subset of pre-existing conformations of the TRIM5α SPRY domain. Biochemistry (2014) 0.81
Enhanced Sampling of an Atomic Model with Hybrid Nonequilibrium Molecular Dynamics-Monte Carlo Simulations Guided by a Coarse-Grained Model. J Chem Theory Comput (2015) 0.81
Characterization of the Three-Dimensional Free Energy Manifold for the Uracil Ribonucleoside from Asynchronous Replica Exchange Simulations. J Chem Theory Comput (2015) 0.76
SAXS-Oriented Ensemble Refinement of Flexible Biomolecules. Biophys J (2017) 0.75
IL-17A produced by gammadelta T cells plays a critical role in innate immunity against listeria monocytogenes infection in the liver. J Immunol (2008) 2.49
Evaluation of needle-knife precut papillotomy after unsuccessful biliary cannulation, especially with regard to postoperative anatomic factors. Surg Endosc (2008) 1.70
Anti-NR2A antibody as a predictor for neuropsychiatric systemic lupus erythematosus. Rheumatology (Oxford) (2011) 1.67
Anti-C1q antibodies are associated with systemic lupus erythematosus global activity but not specifically with nephritis: a controlled study of 126 consecutive patients. Arthritis Rheum (2011) 1.62
Literature review of pain prevalence among older residents of nursing homes. Pain Manag Nurs (2010) 1.29
Clinical manifestation and prognostic factor in anti-melanoma differentiation-associated gene 5 antibody-associated interstitial lung disease as a complication of dermatomyositis. Rheumatology (Oxford) (2010) 1.25
Anti-MDA5 antibody, ferritin and IL-18 are useful for the evaluation of response to treatment in interstitial lung disease with anti-MDA5 antibody-positive dermatomyositis. Rheumatology (Oxford) (2012) 1.21
Clinical characteristics and treatment outcomes of nineteen Japanese patients with gastrointestinal bezoars. Intern Med (2014) 1.11
Correlations between periodontitis and loss of mandibular bone in relation to systemic bone changes in postmenopausal Japanese women. Osteoporos Int (2005) 1.10
Clinical manifestations of neurological involvement in primary Sjögren’s syndrome. Clin Rheumatol (2011) 1.07
Replica-exchange extensions of simulated tempering method. J Chem Phys (2004) 0.98
Thermodynamic perspective on the dock-lock growth mechanism of amyloid fibrils. J Phys Chem B (2009) 0.95
From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.92
Validation study of the Short Time Exposure (STE) test to assess the eye irritation potential of chemicals. Toxicol In Vitro (2011) 0.92
Interleukin-17A is required to suppress invasion of Salmonella enterica serovar Typhimurium to enteric mucosa. Immunology (2010) 0.92
Prediction of membrane protein structures by replica-exchange Monte Carlo simulations: case of two helices. J Chem Phys (2004) 0.90
Early visual experience and the recognition of basic facial expressions: involvement of the middle temporal and inferior frontal gyri during haptic identification by the early blind. Front Hum Neurosci (2013) 0.90
Amyloid-beta(29-42) dimer formations studied by a multicanonical-multioverlap molecular dynamics simulation. J Phys Chem B (2008) 0.88
Human Th1 differentiation induced by lipoarabinomannan/lipomannan from Mycobacterium bovis BCG Tokyo-172. Int Immunol (2008) 0.88
Accelerated induction of mycobacterial antigen-specific CD8+ T cells in the Mycobacterium tuberculosis-infected lung by subcutaneous vaccination with Mycobacterium bovis bacille Calmette-Guérin. Immunology (2009) 0.87
Ab initio prediction of protein-ligand binding structures by replica-exchange umbrella sampling simulations. J Comput Chem (2011) 0.86
Two-dimensional replica-exchange method for predicting protein-ligand binding structures. J Comput Chem (2013) 0.85
Replica-exchange method in van der Waals radius space: overcoming steric restrictions for biomolecules. J Chem Phys (2010) 0.85
Molecular mechanism for stabilizing a short helical peptide studied by generalized-ensemble simulations with explicit solvent. Biophys J (2005) 0.85
Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation. Proteins (2007) 0.84
Vascular patterns in nodules of intraductal papillary mucinous neoplasms depicted under contrast-enhanced ultrasonography are helpful for evaluating malignant potential. Eur J Radiol (2010) 0.84
Interleukin-18 is a key mediator in dermatomyositis: potential contribution to development of interstitial lung disease. Rheumatology (Oxford) (2010) 0.83
Theoretical studies of transition states by the multioverlap molecular dynamics methods. J Chem Phys (2006) 0.82
Communication: Simulated tempering with fast on-the-fly weight determination. J Chem Phys (2013) 0.82
Molecular and supra-molecular structure related differences in toxicity and granulomatogenic activity of mycobacterial cord factor in mice. Microb Pathog (2007) 0.81
Hydrophobic core formation and dehydration in protein folding studied by generalized-ensemble simulations. Biophys J (2010) 0.81
Dissection of a refractory pancreatic-duct stricture by using a pre-cutting needle-knife. Gastrointest Endosc (2006) 0.81
Explicit symplectic integrators of molecular dynamics algorithms for rigid-body molecules in the canonical, isobaric-isothermal, and related ensembles. J Chem Phys (2007) 0.81
Structures of a peptide fragment of beta2-microglobulin studied by replica-exchange molecular dynamics simulations - towards the understanding of the mechanism of amyloid formation. FEBS Lett (2005) 0.81
Temperature and pressure dependence of alanine dipeptide studied by multibaric-multithermal molecular dynamics simulations. J Phys Chem B (2008) 0.80
Prevalence and incidence of pressure ulcers in Japanese long-term-care hospitals. Arch Gerontol Geriatr (2012) 0.80
Santorinicele in a patient with unresectable pancreatic cancer. Intern Med (2008) 0.79
Monte Carlo simulations in generalized isobaric-isothermal ensembles. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.79
Protein structure predictions by parallel simulated annealing molecular dynamics using genetic crossover. J Comput Chem (2011) 0.79
Multidimensional generalized-ensemble algorithms for complex systems. J Chem Phys (2009) 0.79
Suppressed induction of mycobacterial antigen-specific Th1-type CD4+ T cells in the lung after pulmonary mycobacterial infection. Int Immunol (2010) 0.79
Multibaric-multithermal ensemble molecular dynamics simulations. J Comput Chem (2006) 0.79
Care managers' confidence in managing home-based end-of-life care: a cross-sectional study. BMC Geriatr (2013) 0.78
Exploration of conformational spaces of high-mannose-type oligosaccharides by an NMR-validated simulation. Angew Chem Int Ed Engl (2014) 0.78
Amino-acid-dependent main-chain torsion-energy terms for protein systems. J Chem Phys (2013) 0.78
Molecular mechanism of long-range synergetic color tuning between multiple amino acid residues in conger rhodopsin. Biophysics (Oxf) (2010) 0.78
Family caregiver strategies to encourage older relatives with dementia to use social services. J Adv Nurs (2013) 0.78
The Potential of Nasal Oxytocin Administration for Remediation of Autism Spectrum Disorders. CNS Neurol Disord Drug Targets (2016) 0.77
Serum antibodies against the 70k polypeptides of the U1 ribonucleoprotein complex are associated with psychiatric syndromes in systemic lupus erythematosus: a retrospective study. Mod Rheumatol (2012) 0.77
Folding simulations of gramicidin A into the beta-helix conformations: Simulated annealing molecular dynamics study. J Chem Phys (2009) 0.77
Effective sampling in the configurational space of a small peptide by the multicanonical-multioverlap algorithm. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.77
Conformational dynamics of oligosaccharides characterized by paramagnetism-assisted NMR spectroscopy in conjunction with molecular dynamics simulation. Adv Exp Med Biol (2015) 0.76
Analysis of helix-helix interactions of bacteriorhodopsin by replica-exchange simulations. Biophys J (2009) 0.75
Salt effects on hydrophobic-core formation in folding of a helical miniprotein studied by molecular dynamics simulations. Proteins (2013) 0.75
Importance of Second-look Endoscopy on an Empty Stomach for Finding Gastric Bezoars in Patients with Gastric Ulcers. Acta Med Okayama (2017) 0.75
Free-energy analyses of a proton transfer reaction by simulated-tempering umbrella sampling and first-principles molecular dynamics simulations. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.75
From gestures to words: spontaneous verbal labeling of complex sequential hand movements reduces fMRI activation of the imitation-related regions. Neurosci Res (2013) 0.75
Clinical images: Dramatic amelioration of pneumatosis cystoides intestinalis in systemic sclerosis. Arthritis Rheum (2010) 0.75
Intraductal papillary mucinous adenocarcinoma of the bile ducts. Gastrointest Endosc (2006) 0.75
Molecular Simulations of Protein Systems toward Drug Discovery. Yakugaku Zasshi (2016) 0.75
Optimal patch application time in the evaluation of skin irritation. J Dermatol (2013) 0.75
Protein folding simulations by generalized-ensemble algorithms. Adv Exp Med Biol (2014) 0.75
Further evidence that a new type of Japanese pickles reduce the blood pressure of spontaneously hypertensive rats. Biosci Biotechnol Biochem (2014) 0.75
Simulated tempering and magnetizing: application of two-dimensional simulated tempering to the two-dimensional Ising model and its crossover. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.75
A pH-dependent variation in alpha-helix structure of the S-peptide of ribonuclease A studied by Monte Carlo simulated annealing. Biopolymers (2002) 0.75
[A case of resected pancreatic metastasis from renal cell carcinoma 26 years after right nephrectomy]. Nihon Shokakibyo Gakkai Zasshi (2006) 0.75
[Chemotherapy for non-small cell lung cancer: split-dose administration of Cisplatin over four consecutive days and Vinorelbine ditartrate]. Gan To Kagaku Ryoho (2009) 0.75
Structural Characteristics of Monomeric Aβ42 on Fibril in the Early Stage of Secondary Nucleation Process. ACS Chem Neurosci (2020) 0.75
Multioverlap simulations for transitions between reference configurations. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.75
Monte Carlo simulation in the isobaric-multithermal ensemble of a bulk Lennard-Jones fluid system: thermodynamic quantities for pressure from P{ *}=2.42 to 7.25. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.75
Metastatic gastric tumors arising from renal cell carcinoma with endoscopic follow-up: case report and literature review. Nihon Shokakibyo Gakkai Zasshi (2016) 0.75
Bio-functional pickles that reduce blood pressure of rats. Biosci Biotechnol Biochem (2014) 0.75
New approach to the first-order phase transition of Lennard-Jones fluids. J Chem Phys (2004) 0.75
Thermodynamics of two lattice ice models in three dimensions. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.75
A survey on the end-of-life care provided by medical and welfare professionals in a depopulated area. Nihon Koshu Eisei Zasshi (2016) 0.75
Topical application of gamma-tocopherol derivative prevents UV-induced skin pigmentation. Biol Pharm Bull (2006) 0.75