Interferon-lambda3 (IFN-λ3) and its cognate receptor subunits in tree shrews (Tupaia belangeri): genomic sequence retrieval, molecular identification and expression analysis.

PubWeight™: 0.75‹?›

🔗 View Article (PMC 3610868)

Published in PLoS One on March 28, 2013

Authors

Ming-Li Li1, Wen-Wen Xu, Yue-Dong Gao, Yan Guo, Wen-Ju Wang, Chao Wang, Shi-You Jiang, Andrew Willden, Jing-Fei Huang, Hua-Tang Zhang

Author Affiliations

1: Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Kunming, China.

Articles cited by this

The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97

Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance. Nature (2009) 26.47

The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses. Nat Immunol (2004) 26.12

Genome-wide association of IL28B with response to pegylated interferon-alpha and ribavirin therapy for chronic hepatitis C. Nat Genet (2009) 14.16

Genetic variation in IL28B and spontaneous clearance of hepatitis C virus. Nature (2009) 13.99

IFN-lambdas mediate antiviral protection through a distinct class II cytokine receptor complex. Nat Immunol (2002) 11.87

IL-28, IL-29 and their class II cytokine receptor IL-28R. Nat Immunol (2002) 11.22

A high-resolution map of human evolutionary constraint using 29 mammals. Nature (2011) 8.67

IFN-lambda (IFN-lambda) is expressed in a tissue-dependent fashion and primarily acts on epithelial cells in vivo. PLoS Pathog (2008) 4.70

Interleukin-29 uses a type 1 interferon-like program to promote antiviral responses in human hepatocytes. Hepatology (2006) 3.46

Type III interferon (IFN) induces a type I IFN-like response in a restricted subset of cells through signaling pathways involving both the Jak-STAT pathway and the mitogen-activated protein kinases. J Virol (2007) 3.37

Mammalian phylogeny: shaking the tree. Nature (1992) 3.09

Ligand docking and binding site analysis with PyMOL and Autodock/Vina. J Comput Aided Mol Des (2010) 2.67

Transmission of type B viral hepatitis to chimpanzees. J Infect Dis (1973) 2.51

Characterization of the mouse IFN-lambda ligand-receptor system: IFN-lambdas exhibit antitumor activity against B16 melanoma. Cancer Res (2006) 2.34

A phylogenetic foundation for comparative mammalian genomics. Genome Inform (2001) 2.16

Interferon-lambda: a new addition to an old family. J Interferon Cytokine Res (2010) 2.15

Distinct induction patterns and functions of two closely related interferon-inducible human genes, ISG54 and ISG56. J Biol Chem (2006) 2.15

IL-28A and IL-29 mediate antiproliferative and antiviral signals in intestinal epithelial cells and murine CMV infection increases colonic IL-28A expression. Am J Physiol Gastrointest Liver Physiol (2005) 2.05

Interferon-lambdas: the modulators of antivirus, antitumor, and immune responses. J Leukoc Biol (2009) 1.88

IL-28 and IL-29: newcomers to the interferon family. Biochimie (2007) 1.81

Structure and mechanism of receptor sharing by the IL-10R2 common chain. Structure (2010) 1.63

The interferon system of teleost fish. Fish Shellfish Immunol (2006) 1.59

Identification of the zebrafish IFN receptor: implications for the origin of the vertebrate IFN system. J Immunol (2007) 1.57

Murine interferon lambdas (type III interferons) exhibit potent antiviral activity in vivo in a poxvirus infection model. J Gen Virol (2005) 1.52

IL-28A, IL-28B, and IL-29: promising cytokines with type I interferon-like properties. Cytokine Growth Factor Rev (2010) 1.45

The role of genomic data in the discovery, annotation and evolutionary interpretation of the interferon-lambda family. PLoS One (2009) 1.34

A new group of hepadnaviruses naturally infecting orangutans (Pongo pygmaeus). J Virol (1999) 1.32

The tree shrews: adjuncts and alternatives to primates as models for biomedical research. J Med Primatol (2003) 1.31

Identification of a second group of type I IFNs in fish sheds light on IFN evolution in vertebrates. J Immunol (2007) 1.27

Type III IFNs: new layers of complexity in innate antiviral immunity. Biofactors (2009) 1.26

IL28B genetic variation is associated with spontaneous clearance of hepatitis C virus, treatment response, serum IL-28B levels in Chinese population. PLoS One (2012) 1.25

Cloning of a new type II cytokine receptor activating signal transducer and activator of transcription (STAT)1, STAT2 and STAT3. Biochem J (2003) 1.20

Genetics of IL28B and HCV--response to infection and treatment. Nat Rev Gastroenterol Hepatol (2012) 1.20

Pathogenesis of hepatitis C virus infection in Tupaia belangeri. J Virol (2010) 1.17

Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: the class II cytokine receptors and their ligands in mammals and fish. BMC Genomics (2003) 1.15

Full house: 12 receptors for 27 cytokines. Int Immunopharmacol (2004) 1.11

Type III IFNs in pteropid bats: differential expression patterns provide evidence for distinct roles in antiviral immunity. J Immunol (2011) 1.10

Tupaia CD81, SR-BI, claudin-1, and occludin support hepatitis C virus infection. J Virol (2010) 1.10

Intron-containing type I and type III IFN coexist in amphibians: refuting the concept that a retroposition event gave rise to type I IFNs. J Immunol (2010) 1.07

Full-genome sequence analyses of hepatitis B virus (HBV) strains recovered from chimpanzees infected in the wild: implications for an origin of HBV. Virology (2000) 1.06

Interferon lambda: a new sword in cancer immunotherapy. Clin Dev Immunol (2011) 1.04

Structural analysis of cytokines comprising the IL-10 family. Cytokine Growth Factor Rev (2010) 0.99

Predicting changes in protein thermostability brought about by single- or multi-site mutations. BMC Bioinformatics (2010) 0.99

Animal models for the study of HBV replication and its variants. J Clin Virol (2005) 0.98

Efficient infection of tree shrew (Tupaia belangeri) with hepatitis C virus grown in cell culture or from patient plasma. J Gen Virol (2007) 0.97

Molecular cloning, expression, and characterization of chicken IFN -lambda. J Interferon Cytokine Res (2008) 0.94

Hepadnavirus infection in captive gibbons. J Virol (2000) 0.93

Side chain substitution benchmark for peptide/MHC interaction. Protein Sci (2008) 0.87

Type III IFN receptor expression and functional characterisation in the pteropid bat, Pteropus alecto. PLoS One (2011) 0.87

Experimental infection of adult Tupaia belangeri yunalis with human rotavirus. Chin Med J (Engl) (1983) 0.84

Molecular characterization and antiviral analyses of porcine type III interferons. J Interferon Cytokine Res (2010) 0.82

Molecular cloning, expression and antiviral activity of porcine interleukin-29 (poIL-29). Dev Comp Immunol (2010) 0.78

[A study on primary liver cancer in tree shrews induced by human hepatitis B virus and aflatoxin B1]. Zhonghua Bing Li Xue Za Zhi (1989) 0.77

[Primates in the study of hepatitis viruses]. Pathol Biol (Paris) (1990) 0.76

[Genome-wide prediction of interferon family members of tree shrew and their molecular characteristics analysis]. Dongwuxue Yanjiu (2012) 0.76

[Experimental studies on the infection of an adult tree shrew (Tupaia belangeri yunalis) with human rotavirus]. Zhonghua Yi Xue Za Zhi (1982) 0.76

Experimental infection and the state of viral latency of adult tupaia with herpes simplex virus type 1 and 2 and infection of juvenile Tupaia with temperature-sensitive mutants of HSV Type 2. Arch Virol (1980) 0.76

Articles by these authors

(truncated to the top 100)

Global health 2035: a world converging within a generation. Lancet (2013) 16.85

Causes of deaths in children younger than 5 years in China in 2008. Lancet (2010) 5.02

The pan-ErbB negative regulator Lrig1 is an intestinal stem cell marker that functions as a tumor suppressor. Cell (2012) 3.91

Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3. Proc Natl Acad Sci U S A (2002) 3.79

The long rather than the short allele of 5-HTTLPR predisposes Han Chinese to anxiety and reduced connectivity between prefrontal cortex and amygdala. Neurosci Bull (2013) 2.78

Genome-wide copy-number-variation study identified a susceptibility gene, UGT2B17, for osteoporosis. Am J Hum Genet (2008) 2.65

China's facility-based birth strategy and neonatal mortality: a population-based epidemiological study. Lancet (2011) 2.64

Randomized, controlled trial of darbepoetin alfa for the treatment of anemia in hemodialysis patients. Am J Kidney Dis (2002) 2.59

Strong signatures of selection in the domestic pig genome. Proc Natl Acad Sci U S A (2012) 2.59

Endotoxin accumulation prevents carcinogen-induced apoptosis and promotes liver tumorigenesis in rodents. Hepatology (2010) 2.55

Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. Plant Cell (2005) 2.45

The Arabidopsis SOS5 locus encodes a putative cell surface adhesion protein and is required for normal cell expansion. Plant Cell (2003) 2.37

Molecular basis of photoprotection and control of photosynthetic light-harvesting. Nature (2005) 2.35

Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti. MBio (2013) 2.24

PCDH15 is expressed in the neurosensory epithelium of the eye and ear and mutant alleles are responsible for both USH1F and DFNB23. Hum Mol Genet (2003) 2.14

A novel domain in the protein kinase SOS2 mediates interaction with the protein phosphatase 2C ABI2. Proc Natl Acad Sci U S A (2003) 2.14

Genome-wide association and follow-up replication studies identified ADAMTS18 and TGFBR3 as bone mass candidate genes in different ethnic groups. Am J Hum Genet (2009) 2.14

Quantitative profiling of endogenous retinoic acid in vivo and in vitro by tandem mass spectrometry. Anal Chem (2008) 2.12

Diabetes prevalence and determinants in adults in China mainland from 2000 to 2010: a systematic review. Diabetes Res Clin Pract (2012) 2.07

Artificial ligand binding within the HIF2alpha PAS-B domain of the HIF2 transcription factor. Proc Natl Acad Sci U S A (2009) 2.02

LOS2, a genetic locus required for cold-responsive gene transcription encodes a bi-functional enolase. EMBO J (2002) 2.01

Recent advances in efficient and selective synthesis of di-, tri-, and tetrasubstituted alkenes via Pd-catalyzed alkenylation-carbonyl olefination synergy. Acc Chem Res (2008) 1.99

Arabidopsis protein kinase PKS5 inhibits the plasma membrane H+ -ATPase by preventing interaction with 14-3-3 protein. Plant Cell (2007) 1.93

Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing. Nucleic Acids Res (2010) 1.87

SCABP8/CBL10, a putative calcium sensor, interacts with the protein kinase SOS2 to protect Arabidopsis shoots from salt stress. Plant Cell (2007) 1.86

An electrically and mechanically self-healing composite with pressure- and flexion-sensitive properties for electronic skin applications. Nat Nanotechnol (2012) 1.85

Regulation of vacuolar Na+/H+ exchange in Arabidopsis thaliana by the salt-overly-sensitive (SOS) pathway. J Biol Chem (2003) 1.82

The hyaluronan receptors CD44 and Rhamm (CD168) form complexes with ERK1,2 that sustain high basal motility in breast cancer cells. J Biol Chem (2007) 1.82

Regulation of heparin-binding EGF-like growth factor by miR-212 and acquired cetuximab-resistance in head and neck squamous cell carcinoma. PLoS One (2010) 1.77

Gain of interaction with IRS1 by p110α-helical domain mutants is crucial for their oncogenic functions. Cancer Cell (2013) 1.74

Synthesis and stabilization of monodisperse Fe nanoparticles. J Am Chem Soc (2006) 1.68

Gene expression signatures delineate biological and prognostic subgroups in peripheral T-cell lymphoma. Blood (2014) 1.66

Au-Fe3O4 dumbbell nanoparticles as dual-functional probes. Angew Chem Int Ed Engl (2008) 1.64

Loss of viral control in early HIV-1 infection is temporally associated with sequential escape from CD8+ T cell responses and decrease in HIV-1-specific CD4+ and CD8+ T cell frequencies. J Infect Dis (2004) 1.64

Functional and cellular responses in a novel rodent model of anterior ischemic optic neuropathy. Invest Ophthalmol Vis Sci (2003) 1.60

Improving the hydrogen oxidation reaction rate by promotion of hydroxyl adsorption. Nat Chem (2013) 1.52

Photothermally enhanced photodynamic therapy delivered by nano-graphene oxide. ACS Nano (2011) 1.51

Hydrogen-rich saline reduces the oxidative stress and relieves the severity of trauma-induced acute pancreatitis in rats. J Trauma Acute Care Surg (2012) 1.50

Factors influencing rising caesarean section rates in China between 1988 and 2008. Bull World Health Organ (2011) 1.47

Retracted Systematic evaluation of percutaneous radiofrequency ablation versus percutaneous ethanol injection for the treatment of small hepatocellular carcinoma: a meta-analysis. Eur J Med Res (2014) 1.45

Gene-gene interaction between RBMS3 and ZNF516 influences bone mineral density. J Bone Miner Res (2013) 1.45

Developed and developing world responsibilities for historical climate change and CO2 mitigation. Proc Natl Acad Sci U S A (2012) 1.44

High-throughput single-microparticle imaging flow analyzer. Proc Natl Acad Sci U S A (2012) 1.44

Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data. BMC Genomics (2012) 1.44

Cold welding of ultrathin gold nanowires. Nat Nanotechnol (2010) 1.44

Multiparametric 3-T MRI for differentiating low-versus high-grade and category T1 versus T2 bladder urothelial carcinoma. AJR Am J Roentgenol (2015) 1.42

A cell-cell communication signal integrates quorum sensing and stress response. Nat Chem Biol (2013) 1.41

Genome-wide association study suggested copy number variation may be associated with body mass index in the Chinese population. J Hum Genet (2009) 1.40

Laparoscopic adrenalectomy for beginners without open counterpart experience: initial results under staged training. Urology (2009) 1.40

Genome-wide association scan for stature in Chinese: evidence for ethnic specific loci. Hum Genet (2008) 1.39

Analytical characterization using surface-enhanced Raman scattering (SERS) and microfluidic sampling. Nanotechnology (2015) 1.39

Biochemical characterization of the Arabidopsis protein kinase SOS2 that functions in salt tolerance. Plant Physiol (2002) 1.37

Interaction of JMJD6 with single-stranded RNA. Proc Natl Acad Sci U S A (2010) 1.37

Finding the lost treasures in exome sequencing data. Trends Genet (2013) 1.36

Functional nanomaterials for phototherapies of cancer. Chem Rev (2014) 1.36

Receptor-binding domain of SARS-CoV spike protein induces long-term protective immunity in an animal model. Vaccine (2006) 1.36

Downregulation of Thy1 in retinal ganglion cells in experimental glaucoma. Curr Eye Res (2006) 1.36

The SOS3 family of calcium sensors and SOS2 family of protein kinases in Arabidopsis. Plant Physiol (2004) 1.36

Cyclin-dependent kinase 9-cyclin K functions in the replication stress response. EMBO Rep (2010) 1.36

Measuring coverage in MNCH: a validation study linking population survey derived coverage to maternal, newborn, and child health care records in rural China. PLoS One (2013) 1.35

A plasma membrane receptor kinase, GHR1, mediates abscisic acid- and hydrogen peroxide-regulated stomatal movement in Arabidopsis. Plant Cell (2012) 1.33

In vitro and in vivo uncaging and bioluminescence imaging by using photocaged upconversion nanoparticles. Angew Chem Int Ed Engl (2012) 1.33

Prognostic significance of AMPK activation and therapeutic effects of metformin in hepatocellular carcinoma. Clin Cancer Res (2013) 1.32

Anomalous vertebral artery in craniovertebral junction with occipitalization of the atlas. Spine (Phila Pa 1976) (2009) 1.32

Hematologic profile of sepsis in neonates: neutrophil CD64 as a diagnostic marker. Pediatrics (2008) 1.32

CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize. Proc Natl Acad Sci U S A (2013) 1.31

Three-stage quality control strategies for DNA re-sequencing data. Brief Bioinform (2013) 1.30

Parameter stability of the functional-structural plant model GREENLAB as affected by variation within populations, among seasons and among growth stages. Ann Bot (2006) 1.30

A microtubule depolymerizing kinesin functions during both flagellar disassembly and flagellar assembly in Chlamydomonas. Proc Natl Acad Sci U S A (2009) 1.30

Hepatic transforming growth factor beta gives rise to tumor-initiating cells and promotes liver cancer development. Hepatology (2012) 1.30

Bioinformatics clouds for big data manipulation. Biol Direct (2012) 1.29

Multiple functions of the RNA-binding protein HuR in cancer progression, treatment responses and prognosis. Int J Mol Sci (2013) 1.28

Genome-wide association and replication studies identified TRHR as an important gene for lean body mass. Am J Hum Genet (2009) 1.28

Social, economic, political and health system and program determinants of child mortality reduction in China between 1990 and 2006: A systematic analysis. J Glob Health (2012) 1.28

Dual signaling functions of the hybrid sensor kinase RpfC of Xanthomonas campestris involve either phosphorelay or receiver domain-protein interaction. J Biol Chem (2006) 1.28

Establishment of cereal endosperm expression domains: identification and properties of a maize transfer cell-specific transcription factor, ZmMRP-1. Plant Cell (2002) 1.27

Powerful bivariate genome-wide association analyses suggest the SOX6 gene influencing both obesity and osteoporosis phenotypes in males. PLoS One (2009) 1.26

Fluorogenic click reaction. Chem Soc Rev (2009) 1.26

An M2e-based multiple antigenic peptide vaccine protects mice from lethal challenge with divergent H5N1 influenza viruses. Virol J (2010) 1.26

Emergence of carbapenem-resistant clinical Enterobacteriaceae isolates from a teaching hospital in Shanghai, China. J Med Microbiol (2011) 1.26

Oligodendrocyte dysfunction after induction of experimental anterior optic nerve ischemia. Invest Ophthalmol Vis Sci (2005) 1.26

Phosphorylation of SOS3-LIKE CALCIUM BINDING PROTEIN8 by SOS2 protein kinase stabilizes their protein complex and regulates salt tolerance in Arabidopsis. Plant Cell (2009) 1.25

Analysis of serum genome-wide microRNAs for breast cancer detection. Clin Chim Acta (2012) 1.25

Polymorphisms of the low-density lipoprotein receptor-related protein 5 (LRP5) gene are associated with obesity phenotypes in a large family-based association study. J Med Genet (2006) 1.25

vanM, a new glycopeptide resistance gene cluster found in Enterococcus faecium. Antimicrob Agents Chemother (2010) 1.25

Comparing radiation treatments using intensity-modulated beams, multiple arcs, and single arcs. Int J Radiat Oncol Biol Phys (2010) 1.25

Calcineurin cleavage is triggered by elevated intraocular pressure, and calcineurin inhibition blocks retinal ganglion cell death in experimental glaucoma. Proc Natl Acad Sci U S A (2005) 1.24

Robust and comprehensive analysis of 20 osteoporosis candidate genes by very high-density single-nucleotide polymorphism screen among 405 white nuclear families identified significant association and gene-gene interaction. J Bone Miner Res (2006) 1.24

Evaluation of OX40 ligand as a costimulator of human antiviral memory CD8 T cell responses: comparison with B7.1 and 4-1BBL. J Immunol (2005) 1.23

Rodent anterior ischemic optic neuropathy (rAION) induces regional retinal ganglion cell apoptosis with a unique temporal pattern. Invest Ophthalmol Vis Sci (2008) 1.23

Noble metal coated single-walled carbon nanotubes for applications in surface enhanced Raman scattering imaging and photothermal therapy. J Am Chem Soc (2012) 1.23

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. Elife (2013) 1.21

Facile preparation of multifunctional upconversion nanoprobes for multimodal imaging and dual-targeted photothermal therapy. Angew Chem Int Ed Engl (2011) 1.21

Unique acquisition of cytotoxic T-lymphocyte escape mutants in infant human immunodeficiency virus type 1 infection. J Virol (2005) 1.20

The quormone degradation system of Agrobacterium tumefaciens is regulated by starvation signal and stress alarmone (p)ppGpp. Mol Microbiol (2004) 1.20

Chinese-style decentralization and health system reform. PLoS Med (2012) 1.18

The Arabidopsis chaperone J3 regulates the plasma membrane H+-ATPase through interaction with the PKS5 kinase. Plant Cell (2010) 1.18

A critical HA1 neutralizing domain of H5N1 influenza in an optimal conformation induces strong cross-protection. PLoS One (2013) 1.18

Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. Hum Mol Genet (2013) 1.17

PEGylated WS(2) nanosheets as a multifunctional theranostic agent for in vivo dual-modal CT/photoacoustic imaging guided photothermal therapy. Adv Mater (2013) 1.17