Published in Appl Environ Microbiol on May 03, 2013
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Deletion of the Cel48S cellulase from Clostridium thermocellum. Proc Natl Acad Sci U S A (2010) 1.54
Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos. J Proteome Res (2012) 1.50
Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. Appl Environ Microbiol (2009) 1.45
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Characterization of the 70S Ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach. J Proteome Res (2004) 1.38
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Molecular dynamics of the Shewanella oneidensis response to chromate stress. Mol Cell Proteomics (2006) 1.35
MASPIC: intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence. Anal Chem (2005) 1.34
Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry. Anal Chem (2004) 1.33
Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass. J Bacteriol (2012) 1.32
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Fungal mycelia allow chemotactic dispersal of polycyclic aromatic hydrocarbon-degrading bacteria in water-unsaturated systems. Environ Microbiol (2009) 1.18
Protein surface mapping by chemical oxidation: structural analysis by mass spectrometry. Anal Biochem (2003) 1.17
Identification of phosphorylation sites on the yeast ribonucleotide reductase inhibitor Sml1. J Biol Chem (2003) 1.17
ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation. Anal Chem (2006) 1.16
Expressed peptide tags: an additional layer of data for genome annotation. J Proteome Res (2006) 1.14
Proteomic characterization of cellular and molecular processes that enable the Nanoarchaeum equitans--Ignicoccus hospitalis relationship. PLoS One (2011) 1.14
Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress. BMC Genomics (2012) 1.13
Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics. Mol Cell Proteomics (2007) 1.13
Integrating 'top-down" and "bottom-up" mass spectrometric approaches for proteomic analysis of Shewanella oneidensis. J Proteome Res (2003) 1.12
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Investigation of lotic microbial aggregates by a combined technique of fluorescent in situ hybridization and lectin-binding-analysis. J Microbiol Methods (2002) 1.10
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Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics. Anal Chem (2006) 1.08
A computational method for assessing peptide- identification reliability in tandem mass spectrometry analysis with SEQUEST. Proteomics (2004) 1.08
Tolerance and metabolic response of acetogenic bacteria toward oxygen. Appl Environ Microbiol (2002) 1.08
Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. ISME J (2008) 1.07
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Functional diversity and electron donor dependence of microbial populations capable of U(VI) reduction in radionuclide-contaminated subsurface sediments. Appl Environ Microbiol (2008) 1.07
Discovery and annotation of small proteins using genomics, proteomics, and computational approaches. Genome Res (2011) 1.06
Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation. Environ Microbiol (2008) 1.05
Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities. Anal Chem (2013) 1.05
Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community. Environ Microbiol (2011) 1.04
Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1. Appl Environ Microbiol (2006) 1.04
Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles. Environ Sci Technol (2010) 1.04
Ammonium availability affects the ratio of ammonia-oxidizing bacteria to ammonia-oxidizing archaea in simulated creek ecosystems. Appl Environ Microbiol (2011) 1.04
Conidial Dihydroxynaphthalene Melanin of the Human Pathogenic Fungus Aspergillus fumigatus Interferes with the Host Endocytosis Pathway. Front Microbiol (2011) 1.04
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. ISME J (2012) 1.03
A spastic paraplegia mouse model reveals REEP1-dependent ER shaping. J Clin Invest (2013) 1.03
Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community. Appl Environ Microbiol (2008) 1.03
Use of label-free quantitative proteomics to distinguish the secreted cellulolytic systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis. Appl Environ Microbiol (2011) 1.03
Neonatal lines in the enamel of primary teeth--a morphological and scanning electron microscopic investigation. Arch Oral Biol (2008) 1.01
Photochemical surface mapping of C14S-Sml1p for constrained computational modeling of protein structure. Anal Biochem (2005) 1.00
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinformatics (2010) 0.99
Experimental approach for deep proteome measurements from small-scale microbial biomass samples. Anal Chem (2008) 0.99
Ecological distribution and population physiology defined by proteomics in a natural microbial community. Mol Syst Biol (2010) 0.99
Dosage-dependent proteome response of Shewanella oneidensis MR-1 to acute chromate challenge. J Proteome Res (2007) 0.99
Community structure and photosynthetic activity of epilithon from a highly acidic (pH < or = 2) mountain stream in Patagonia, Argentina. Extremophiles (2004) 0.99
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Label-free quantitative proteomics for the extremely thermophilic bacterium Caldicellulosiruptor obsidiansis reveal distinct abundance patterns upon growth on cellobiose, crystalline cellulose, and switchgrass. J Proteome Res (2011) 0.96
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