Published in Front Plant Sci on August 01, 2013
Archaeological and genetic insights into the origins of domesticated rice. Proc Natl Acad Sci U S A (2014) 1.47
Copy number polymorphism in plant genomes. Theor Appl Genet (2013) 1.20
Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome. PLoS Genet (2014) 1.02
EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments. Plant Cell (2016) 0.91
Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication. Proc Natl Acad Sci U S A (2014) 0.87
Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.). Planta (2014) 0.83
Cloning of quantitative trait genes from rice reveals conservation and divergence of photoperiod flowering pathways in Arabidopsis and rice. Front Plant Sci (2014) 0.82
Back into the wild-Apply untapped genetic diversity of wild relatives for crop improvement. Evol Appl (2016) 0.79
Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels. Mol Biol Evol (2016) 0.78
Signatures of adaptation in the weedy rice genome. Nat Genet (2017) 0.77
A Catalog of Regulatory Sequences for Trait Gene for the Genome Editing of Wheat. Front Plant Sci (2016) 0.75
Domestication reduces alternative splicing expression variations in sorghum. PLoS One (2017) 0.75
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A physical, genetic and functional sequence assembly of the barley genome. Nature (2012) 7.25
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Positional cloning of the wheat vernalization gene VRN1. Proc Natl Acad Sci U S A (2003) 6.34
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The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science (2004) 5.86
A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat Genet (2007) 5.70
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat Genet (2008) 5.64
Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet (2008) 5.57
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GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet (2006) 5.51
Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat Commun (2011) 5.41
Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat Genet (2011) 5.16
A map of rice genome variation reveals the origin of cultivated rice. Nature (2012) 4.92
The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science (2005) 4.31
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet (2011) 4.19
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature (2012) 4.00
Comparative population genomics of maize domestication and improvement. Nat Genet (2012) 3.78
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature (2012) 3.53
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol (2011) 3.51
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat Genet (2011) 3.51
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci U S A (2013) 3.48
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Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature (2013) 3.40
Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev (2004) 3.35
Control of rice grain-filling and yield by a gene with a potential signature of domestication. Nat Genet (2008) 3.09
The genetic basis of flowering responses to seasonal cues. Nat Rev Genet (2012) 2.98
Draft genome of the wheat A-genome progenitor Triticum urartu. Nature (2013) 2.86
Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc Natl Acad Sci U S A (2007) 2.82
Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nat Biotechnol (2012) 2.82
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A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit. Science (2008) 2.66
Control of grain size, shape and quality by OsSPL16 in rice. Nat Genet (2012) 2.58
The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency. Nature (2012) 2.57
White grapes arose through the mutation of two similar and adjacent regulatory genes. Plant J (2007) 2.56
Molecular characterization of the major wheat domestication gene Q. Genetics (2005) 2.53
Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nat Genet (2011) 2.50
Gene duplication and evolutionary novelty in plants. New Phytol (2009) 2.46
Identification of a functional transposon insertion in the maize domestication gene tb1. Nat Genet (2011) 2.42
Control of a key transition from prostrate to erect growth in rice domestication. Nat Genet (2008) 2.42
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Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. Proc Natl Acad Sci U S A (2011) 2.38
Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nat Genet (2012) 2.34
Evolutionary history of GS3, a gene conferring grain length in rice. Genetics (2009) 2.33
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nat Genet (2012) 2.33
The genome of melon (Cucumis melo L.). Proc Natl Acad Sci U S A (2012) 2.24
Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2. Proc Natl Acad Sci U S A (2001) 2.22
Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiol (2011) 2.20
Genetic control of rice plant architecture under domestication. Nat Genet (2008) 2.17
Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering. Proc Natl Acad Sci U S A (2012) 2.11
Artificial selection for determinate growth habit in soybean. Proc Natl Acad Sci U S A (2010) 2.02
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Associative transcriptomics of traits in the polyploid crop species Brassica napus. Nat Biotechnol (2012) 1.96
Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice. Proc Natl Acad Sci U S A (2009) 1.89
Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication. Nat Genet (2008) 1.88
OsLG1 regulates a closed panicle trait in domesticated rice. Nat Genet (2013) 1.82
Crop genome sequencing: lessons and rationales. Trends Plant Sci (2011) 1.77
The gene for fragrance in rice. Plant Biotechnol J (2005) 1.76
Parallel domestication of the Shattering1 genes in cereals. Nat Genet (2012) 1.75
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Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum. Proc Natl Acad Sci U S A (2011) 1.73
Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. Proc Natl Acad Sci U S A (2012) 1.70
Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation. Curr Opin Plant Biol (2010) 1.63
Two evolutionary histories in the genome of rice: the roles of domestication genes. PLoS Genet (2011) 1.63
INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nat Genet (2011) 1.63
Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proc Natl Acad Sci U S A (2012) 1.61
The origin and evolution of fragrance in rice (Oryza sativa L.). Proc Natl Acad Sci U S A (2009) 1.61
Population-based resequencing reveals that the flowering time adaptation of cultivated barley originated east of the Fertile Crescent. Mol Biol Evol (2008) 1.61
Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway. Proc Natl Acad Sci U S A (2008) 1.60
Candidate gene association mapping of Arabidopsis flowering time. Genetics (2009) 1.58
From forest to field: perennial fruit crop domestication. Am J Bot (2011) 1.54
Novel Phr1 mutations and the evolution of phenol reaction variation in US weedy rice (Oryza sativa). New Phytol (2009) 1.53
Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges. Plant Cell (2012) 1.52
Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A (2011) 1.50
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proc Natl Acad Sci U S A (2012) 1.49
Evolution of the VvMybA gene family, the major determinant of berry colour in cultivated grapevine (Vitis vinifera L.). Heredity (Edinb) (2009) 1.45
Distribution of SUN, OVATE, LC, and FAS in the tomato germplasm and the relationship to fruit shape diversity. Plant Physiol (2011) 1.45
Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbred lines from crosses between japonica rice cultivars. Theor Appl Genet (2008) 1.37
The role of recently derived FT paralogs in sunflower domestication. Curr Biol (2010) 1.32
The genomic signature of crop-wild introgression in maize. PLoS Genet (2013) 1.31
Genetic and molecular characterization of the VRN2 loci in tetraploid wheat. Plant Physiol (2008) 1.30
Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping. PLoS Genet (2013) 1.30
Naturally occurring allele diversity allows potato cultivation in northern latitudes. Nature (2013) 1.29
The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism. PLoS Genet (2008) 1.28
TAC1, a major quantitative trait locus controlling tiller angle in rice. Plant J (2007) 1.27
Molecular genetics of berry colour variation in table grape. Mol Genet Genomics (2006) 1.26
The role of casein kinase II in flowering time regulation has diversified during evolution. Plant Physiol (2009) 1.25
Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication. Plant Cell (2008) 1.24
Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. BMC Biol (2010) 1.23
Systems-biology approaches for predicting genomic evolution. Nat Rev Genet (2011) 1.23
Genetic control of a transition from black to straw-white seed hull in rice domestication. Plant Physiol (2011) 1.22
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc Natl Acad Sci U S A (2010) 1.22
Increase in tomato locule number is controlled by two single-nucleotide polymorphisms located near WUSCHEL. Plant Physiol (2011) 1.19
Polyploidy and genome evolution in plants. Curr Opin Plant Biol (2005) 5.30
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc Natl Acad Sci U S A (2003) 4.62
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature (2012) 4.00
Evolutionary genetics of genome merger and doubling in plants. Annu Rev Genet (2008) 3.45
A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics (2004) 2.84
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Res (2006) 2.69
Rate variation among nuclear genes and the age of polyploidy in Gossypium. Mol Biol Evol (2003) 2.64
Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol Ecol (2005) 2.53
Gene duplication and evolutionary novelty in plants. New Phytol (2009) 2.46
Novel patterns of gene expression in polyploid plants. Trends Genet (2005) 2.24
A global assembly of cotton ESTs. Genome Res (2006) 2.18
Toward sequencing cotton (Gossypium) genomes. Plant Physiol (2007) 2.16
Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics (2004) 2.08
Epigenetic phenomena and the evolution of plant allopolyploids. Mol Phylogenet Evol (2003) 1.95
Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. Am J Bot (2002) 1.90
Epigenetics and plant evolution. New Phytol (2005) 1.87
Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics (2007) 1.84
Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium). Genetics (2009) 1.71
Genomic expression dominance in allopolyploids. BMC Biol (2009) 1.71
Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. New Phytol (2009) 1.66
A bountiful harvest: genomic insights into crop domestication phenotypes. Annu Rev Plant Biol (2013) 1.52
A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics (2006) 1.51
Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant. Proc Natl Acad Sci U S A (2008) 1.38
A majority of cotton genes are expressed in single-celled fiber. Planta (2007) 1.38
Homoeologous nonreciprocal recombination in polyploid cotton. New Phytol (2009) 1.37
Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton. BMC Genomics (2012) 1.36
A draft physical map of a D-genome cotton species (Gossypium raimondii). BMC Genomics (2010) 1.32
Incongruent patterns of local and global genome size evolution in cotton. Genome Res (2004) 1.30
Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton. Theor Appl Genet (2005) 1.29
The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism. PLoS Genet (2008) 1.28
Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae). Am J Bot (2004) 1.24
Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. BMC Biol (2010) 1.23
Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). Plant J (2007) 1.17
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants. Proc Natl Acad Sci U S A (2009) 1.17
Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense. Evol Dev (2008) 1.15
Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber. J Integr Plant Biol (2010) 1.15
Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids. Genetics (2005) 1.13
Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J Hered (2006) 1.12
Spotted cotton oligonucleotide microarrays for gene expression analysis. BMC Genomics (2007) 1.12
Cryptic repeated genomic recombination during speciation in Gossypium gossypioides. Evolution (2003) 1.09
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing. G3 (Bethesda) (2013) 1.07
Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton. Genetics (2008) 1.06
Intron size and genome size in plants. Mol Biol Evol (2002) 1.05
Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium). BMC Genomics (2009) 1.05
Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum. Theor Appl Genet (2005) 1.00
Targeted sequence capture as a powerful tool for evolutionary analysis. Am J Bot (2012) 0.98
Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium). Mol Biol Evol (2002) 0.96
Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton. J Hered (2009) 0.95
Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense. New Phytol (2013) 0.94
Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence. Genome Biol Evol (2014) 0.94
Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium. Genome (2008) 0.94
A phylogenetic analysis of indel dynamics in the cotton genus. Mol Biol Evol (2008) 0.92
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The history and disposition of transposable elements in polyploid Gossypium. Genome (2010) 0.90
Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies. Mol Biol Evol (2014) 0.90
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Multiple patterns of rDNA evolution following polyploidy in Oryza. Mol Phylogenet Evol (2009) 0.89
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PHENETIC COMPARISON OF SEVEN Echinacea SPECIES BASED ON IMMUNOMODULATORY CHARACTERISTICS. Econ Bot (2006) 0.85
Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L. Planta Med (2007) 0.83
Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.). Planta (2014) 0.83
Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium). Proc Natl Acad Sci U S A (2011) 0.82
CenH3 evolution in diploids and polyploids of three angiosperm genera. BMC Plant Biol (2014) 0.81
Tobacco genomes quickly go up in smoke. New Phytol (2007) 0.80
The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco. Mol Biol Evol (2012) 0.79
Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives. Evolution (2006) 0.78
The hairy problem of epigenetics in evolution. New Phytol (2011) 0.78
Phylogenetic relationships in Gleditsia (Leguminosae) based on ITS sequences. Am J Bot (2003) 0.77
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