Published in Methods Mol Biol on January 01, 2013
Combined DNA-RNA fluorescent in situ hybridization (FISH) to study X chromosome inactivation in differentiated female mouse embryonic stem cells. J Vis Exp (2014) 0.82
Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains. Biophys J (2016) 0.79
Transcriptional Analysis by Nascent RNA FISH of In Vivo Trophoblast Giant Cells or In Vitro Short-term Cultures of Ectoplacental Cone Explants. J Vis Exp (2016) 0.75
Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence. Cell (2003) 11.40
Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature (2012) 9.75
Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin. Mol Cell Biol (2006) 5.99
Epigenetic dynamics of imprinted X inactivation during early mouse development. Science (2003) 5.80
LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation. Cell (2010) 3.70
Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation. Nat Cell Biol (2006) 3.66
Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes. Nat Genet (2001) 3.63
A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced. Genes Dev (2006) 3.41
Photoconversion of YFP into a CFP-like species during acceptor photobleaching FRET experiments. Nat Methods (2005) 2.92
Imprinted X-inactivation in extra-embryonic endoderm cell lines from mouse blastocysts. Development (2005) 2.91
Retracted RNAi-dependent and independent control of LINE1 accumulation and mobility in mouse embryonic stem cells. PLoS Genet (2013) 2.91
Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development. Nature (2011) 2.75
The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA. Genes Dev (2011) 2.53
Regulation of X-chromosome inactivation by the X-inactivation centre. Nat Rev Genet (2011) 2.50
Monomethylation of histone H4-lysine 20 is involved in chromosome structure and stability and is essential for mouse development. Mol Cell Biol (2009) 2.47
Evidence for de novo imprinted X-chromosome inactivation independent of meiotic inactivation in mice. Nature (2005) 2.46
Differential histone H3 Lys-9 and Lys-27 methylation profiles on the X chromosome. Mol Cell Biol (2004) 2.43
Role of histone methyltransferase G9a in CpG methylation of the Prader-Willi syndrome imprinting center. J Biol Chem (2003) 2.25
X inactivation and the complexities of silencing a sex chromosome. Curr Opin Cell Biol (2009) 2.09
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments. Genome Res (2013) 2.05
High-resolution analysis of epigenetic changes associated with X inactivation. Genome Res (2009) 2.02
Highly dynamic and sex-specific expression of microRNAs during early ES cell differentiation. PLoS Genet (2009) 1.96
The pluripotent genome in three dimensions is shaped around pluripotency factors. Nature (2013) 1.82
Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One (2011) 1.82
MicroRNA regulation of Cbx7 mediates a switch of Polycomb orthologs during ESC differentiation. Cell Stem Cell (2012) 1.72
Antisense RNA in imprinting: spreading silence through Air. Trends Genet (2002) 1.57
Dynamic changes in paternal X-chromosome activity during imprinted X-chromosome inactivation in mice. Proc Natl Acad Sci U S A (2009) 1.56
Smchd1-dependent and -independent pathways determine developmental dynamics of CpG island methylation on the inactive X chromosome. Dev Cell (2012) 1.47
Segmental folding of chromosomes: a basis for structural and regulatory chromosomal neighborhoods? Bioessays (2013) 1.45
Homo- and hetero-oligomerization of beta-arrestins in living cells. J Biol Chem (2005) 1.39
Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation. Cell (2011) 1.36
Picosecond-hetero-FRET microscopy to probe protein-protein interactions in live cells. Biophys J (2002) 1.36
Combined immunofluorescence, RNA fluorescent in situ hybridization, and DNA fluorescent in situ hybridization to study chromatin changes, transcriptional activity, nuclear organization, and X-chromosome inactivation. Methods Mol Biol (2008) 1.30
HiTC: exploration of high-throughput 'C' experiments. Bioinformatics (2012) 1.29
Noncoding RNAs and epigenetic mechanisms during X-chromosome inactivation. Annu Rev Cell Dev Biol (2014) 1.25
Evolutionary diversity and developmental regulation of X-chromosome inactivation. Hum Genet (2011) 1.20
Structural organization of the inactive X chromosome in the mouse. Nature (2016) 1.15
Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles. RNA (2011) 1.13
Relationship of XIST expression and responses of ovarian cancer to chemotherapy. Mol Cancer Ther (2002) 1.13
X-chromosome inactivation in mouse embryonic stem cells: analysis of histone modifications and transcriptional activity using immunofluorescence and FISH. Methods Enzymol (2004) 1.12
X inactive-specific transcript RNA coating and genetic instability of the X chromosome in BRCA1 breast tumors. Cancer Res (2007) 1.12
Role and control of X chromosome dosage in mammalian development. Curr Opin Genet Dev (2013) 1.12
Homo-FRET versus hetero-FRET to probe homodimers in living cells. Methods Enzymol (2003) 1.09
Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes. Mol Cell Biol (2013) 1.07
A phosphorylated subpopulation of the histone variant macroH2A1 is excluded from the inactive X chromosome and enriched during mitosis. Proc Natl Acad Sci U S A (2008) 1.07
Recent advances in X-chromosome inactivation research. Curr Opin Cell Biol (2012) 1.05
Initiation of epigenetic reprogramming of the X chromosome in somatic nuclei transplanted to a mouse oocyte. EMBO Rep (2005) 1.05
Dynamic plasticity of large-scale chromatin structure revealed by self-assembly of engineered chromosome regions. J Cell Biol (2010) 1.04
Fifty years of X-inactivation research. Development (2011) 1.04
Deep-sequencing protocols influence the results obtained in small-RNA sequencing. PLoS One (2012) 1.03
Lessons from comparative analysis of X-chromosome inactivation in mammals. Chromosome Res (2009) 1.03
A novel transient glutamatergic population migrating from the pallial-subpallial boundary contributes to neocortical development. J Neurosci (2010) 1.02
ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. Bioinformatics (2012) 0.98
Nuclear organization and dosage compensation. Cold Spring Harb Perspect Biol (2010) 0.94
Unusual chromatin status and organization of the inactive X chromosome in murine trophoblast giant cells. Development (2013) 0.93
Non-rigid registration of 3D multi-channel microscopy images of cell nuclei. Med Image Comput Comput Assist Interv (2006) 0.92
The last 59 amino acids of Smoothened cytoplasmic tail directly bind the protein kinase Fused and negatively regulate the Hedgehog pathway. Dev Biol (2006) 0.90
Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. Bioinformatics (2010) 0.87
X chromosome inactivation: when dosage counts. Cell (2009) 0.85
Live-cell imaging reveals multiple interactions between Epstein-Barr virus nuclear antigen 1 and cellular chromatin during interphase and mitosis. J Virol (2012) 0.82
Stable accumulation of p67phox at the phagosomal membrane and ROS production within the phagosome. J Leukoc Biol (2011) 0.80
Small RNAs derived from structural non-coding RNAs. Methods (2013) 0.79
Changes in the organization of the genome during the mammalian cell cycle. Genome Biol (2013) 0.77
High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale. Methods Mol Biol (2015) 0.76
Rnf12--a jack of all trades in X inactivation? PLoS Genet (2011) 0.75
LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation. Cell (2016) 0.75
Correction: RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells. PLoS Genet (2015) 0.75
[Inactivation of X chromosome: cells know how to count two X chromosomes]. Med Sci (Paris) (2008) 0.75
[Establishing transcriptional silencing of the X chromosome during early embryogenesis]. Biol Aujourdhui (2010) 0.75
Corrigendum: Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells. Nat Commun (2015) 0.75
Corrigendum: Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells. Nat Genet (2017) 0.75
Epigenetic mechanisms in development and disease. Semin Cell Dev Biol (2010) 0.75
The dynamics of epigenetic changes in a range of organisms. Curr Top Dev Biol (2013) 0.75
Cell nucleus. Curr Opin Cell Biol (2013) 0.75
A new insertion in the HIV-1 reverse transcriptase gene inducing major resistance to non-nucleoside reverse transcriptase inhibitors. AIDS (2005) 0.75
[Initiation of X chromosome inactivation during early embryogenesis in mice and in humans]. Bull Acad Natl Med (2013) 0.75
[Cross talk between the Xics]. Med Sci (Paris) (2006) 0.75