Published in Biochemistry on July 16, 1985
Influences of mRNA secondary structure on initiation by eukaryotic ribosomes. Proc Natl Acad Sci U S A (1986) 8.00
Characterization of RNA hairpin loop stability. Nucleic Acids Res (1988) 3.10
Stability of single-nucleotide bulge loops embedded in a GAAA RNA hairpin stem. RNA (2012) 0.79
Helix capping in RNA structure. PLoS One (2014) 0.79
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol (1999) 41.48
Improved free-energy parameters for predictions of RNA duplex stability. Proc Natl Acad Sci U S A (1986) 19.52
Improved predictions of secondary structures for RNA. Proc Natl Acad Sci U S A (1989) 11.52
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry (1998) 9.75
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proc Natl Acad Sci U S A (1994) 8.06
Predicting optimal and suboptimal secondary structure for RNA. Methods Enzymol (1990) 7.08
Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp. Biochemistry (1983) 6.81
Predicting thermodynamic properties of RNA. Methods Enzymol (1995) 3.38
Thermodynamics of (dG--dC)3 double-helix formation in water and deuterium oxide. Biochemistry (1981) 3.30
Polymer-supported RNA synthesis and its application to test the nearest-neighbor model for duplex stability. Biochemistry (1986) 3.21
Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing. Biochemistry (1996) 2.96
Thermodynamic studies of RNA stability. J Biomol Struct Dyn (1984) 2.75
Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes. Biochemistry (1985) 2.70
Predicting oligonucleotide affinity to nucleic acid targets. RNA (1999) 2.67
A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison. Nucleic Acids Res (1991) 2.51
Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs. Biochemistry (1991) 2.44
Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin. Science (1992) 2.44
Thermodynamics of single mismatches in RNA duplexes. Biochemistry (1999) 2.36
Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids. Biochemistry (1986) 2.32
Expanded CUG repeat RNAs form hairpins that activate the double-stranded RNA-dependent protein kinase PKR. RNA (2000) 2.25
Thermal unfolding of a group I ribozyme: the low-temperature transition is primarily disruption of tertiary structure. Biochemistry (1993) 2.13
Laser temperature-jump, spectroscopic, and thermodynamic study of salt effects on duplex formation by dGCATGC. Biochemistry (1989) 2.13
Laser temperature-jump study of stacking in adenylic acid polymers. Biochemistry (1979) 2.12
Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid. Biochemistry (1987) 1.95
Energetics of internal GU mismatches in ribooligonucleotide helixes. Biochemistry (1986) 1.92
Free energy contributions of G.U and other terminal mismatches to helix stability. Biochemistry (1986) 1.92
Thermodynamics of three-way multibranch loops in RNA. Biochemistry (2001) 1.78
Effects of GA mismatches on the structure and thermodynamics of RNA internal loops. Biochemistry (1990) 1.76
Solvent effects on the stability of A7U7p. Biochemistry (1985) 1.73
Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops. Biochemistry (1991) 1.71
Nearest-neighbor parameters for G.U mismatches: [formula; see text] is destabilizing in the contexts [formula; see text] and [formula; see text] but stabilizing in [formula; see text]. Biochemistry (1991) 1.70
Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics. Biochemistry (1993) 1.70
Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods. Science (1992) 1.69
Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. RNA (1997) 1.68
Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides. Biochemistry (1990) 1.63
A model for the stabilities of RNA hairpins based on a study of the sequence dependence of stability for hairpins of six nucleotides. Biochemistry (1994) 1.58
A periodic table of symmetric tandem mismatches in RNA. Biochemistry (1995) 1.55
Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: evidence for ribozyme specific interactions with 2' OH groups. Biochemistry (1991) 1.50
Measuring the thermodynamics of RNA secondary structure formation. Biopolymers (1997) 1.43
RNA hairpin loop stability depends on closing base pair. Nucleic Acids Res (1993) 1.40
Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate. Biochemistry (1990) 1.40
Intraoperative complications of laparoscopic cholecystectomy. Can J Anaesth (1993) 1.36
Thermodynamics of RNA-RNA duplexes with 2- or 4-thiouridines: implications for antisense design and targeting a group I intron. Biochemistry (1999) 1.36
Solvent effects on the kinetics and thermodynamics of stacking in poly(cytidylic acid). Biochemistry (1981) 1.36
The stability and structure of tandem GA mismatches in RNA depend on closing base pairs. Biochemistry (1994) 1.35
Kinetics for reaction of a circularized intervening sequence with CU, UCU, CUCU, and CUCUCU: mechanistic implications from the dependence on temperature and on oligomer and Mg2+ concentrations. Biochemistry (1988) 1.35
Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA. Biochemistry (2000) 1.35
An NAD derivative produced during transfer RNA splicing: ADP-ribose 1"-2" cyclic phosphate. Science (1993) 1.33
Solvent effects on the dynamics of (dG-dC)3. Biopolymers (1983) 1.33
The kinetics of codon-anticodon interaction in yeast phenylalanine transfer RNA. J Mol Biol (1975) 1.32
Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach. Biochemistry (1996) 1.31
Improved free energies for G.C base-pairs. J Mol Biol (1985) 1.31
Sequence dependence of stability for coaxial stacking of RNA helixes with Watson-Crick base paired interfaces. Biochemistry (1994) 1.20
Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs. J Mol Biol (1999) 1.20
Thermodynamics of coaxially stacked helixes with GA and CC mismatches. Biochemistry (1996) 1.18
Evidence that 5-hydroxytryptamine3 receptors mediate cytotoxic drug and radiation-evoked emesis. Br J Cancer (1987) 1.17
Solution structure of (rGGCAGGCC)2 by two-dimensional NMR and the iterative relaxation matrix approach. Biochemistry (1997) 1.17
Association of 2'-5' oligoribonucleotides. Nucleic Acids Res (1992) 1.17
Laser crosslinking of E. coli RNA polymerase and T7 DNA. Nucleic Acids Res (1982) 1.14
Thermodynamics of nonsymmetric tandem mismatches adjacent to G.C base pairs in RNA. Biochemistry (1997) 1.13
Thermodynamic stabilities of internal loops with GU closing pairs in RNA. Biochemistry (2001) 1.12
NMR structures of r(GCAGGCGUGC)2 and determinants of stability for single guanosine-guanosine base pairs. Biochemistry (2000) 1.12
Transient ADP-ribosylation of a 2'-phosphate implicated in its removal from ligated tRNA during splicing in yeast. J Biol Chem (1999) 1.12
Binding of guanosine and 3' splice site analogues to a group I ribozyme: interactions with functional groups of guanosine and with additional nucleotides. Biochemistry (1993) 1.10
The energetics of small internal loops in RNA. Biopolymers (2001) 1.09
Solvent effects on thermodynamics of double-helix formation in (dG-dC)3. Biochemistry (1981) 1.08
Replacement of the conserved G.U with a G-C pair at the cleavage site of the Tetrahymena ribozyme decreases binding, reactivity, and fidelity. Biochemistry (1994) 1.08
Effects of substrate structure on the kinetics of circle opening reactions of the self-splicing intervening sequence from Tetrahymena thermophila: evidence for substrate and Mg2+ binding interactions. Nucleic Acids Res (1989) 1.07
Fluorescence detected circular dichroism study of the anticodon loop of yeast tRNAPhe. Biochemistry (1975) 1.07
The time dependence of chemical modification reveals slow steps in the folding of a group I ribozyme. Biochemistry (1995) 1.07
Thermodynamic and activation parameters for binding of a pyrene-labeled substrate by the Tetrahymena ribozyme: docking is not diffusion-controlled and is driven by a favorable entropy change. Biochemistry (1995) 1.06
Dramatic thermostabilization of yeast iso-1-cytochrome c by an asparagine----isoleucine replacement at position 57. Proc Natl Acad Sci U S A (1989) 1.04
Replacement of the invariant lysine 77 by arginine in yeast iso-1-cytochrome c results in enhanced and normal activities in vitro and in vivo. J Biol Chem (1987) 1.03
G.A and U.U mismatches can stabilize RNA internal loops of three nucleotides. Biochemistry (1996) 1.02
Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA. Biochemistry (1996) 1.01
A Pneumocystis carinii group I intron ribozyme that does not require 2' OH groups on its 5' exon mimic for binding to the catalytic core. Biochemistry (1997) 0.98
Laser temperature jump study of solvent effects of poly(adenylic acid) stacking. Biochemistry (1980) 0.97
Thermodynamics of RNA internal loops with a guanosine-guanosine pair adjacent to another noncanonical pair. Biochemistry (2001) 0.97
Proton magnetic resonance melting studies of CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp. Biochemistry (1983) 0.95
Nuclear overhauser studies of CCGGAp, ACCGGp, and ACCGGUp. Biochemistry (1983) 0.93
Substrate recognition by a yeast 2'-phosphotransferase involved in tRNA splicing and by its Escherichia coli homolog. Biochemistry (2001) 0.92
Cooperative and anticooperative binding to a ribozyme. Proc Natl Acad Sci U S A (1993) 0.92
A mechanistic framework for the second step of splicing catalyzed by the Tetrahymena ribozyme. Biochemistry (1996) 0.92
C5-(1-propynyl)-2'-deoxy-pyrimidines enhance mismatch penalties of DNA:RNA duplex formation. Biochemistry (2001) 0.92
Fluorescence-detected stopped flow with a pyrene labeled substrate reveals that guanosine facilitates docking of the 5' cleavage site into a high free energy binding mode in the Tetrahymena ribozyme. Biochemistry (1994) 0.92
Investigation of the structural basis for thermodynamic stabilities of tandem GU wobble pairs: NMR structures of (rGGAGUUCC)2 and (rGGAUGUCC)2. Biochemistry (1997) 0.91
Antisense binding enhanced by tertiary interactions: binding of phosphorothioate and N3'-->P5' phosphoramidate hexanucleotides to the catalytic core of a group I ribozyme from the mammalian pathogen Pneumocystis carinii. Biochemistry (1998) 0.91
Stability and structure of RNA duplexes containing isoguanosine and isocytidine. J Am Chem Soc (2001) 0.91
Effects of Mg2+ and the 2' OH of guanosine on steps required for substrate binding and reactivity with the Tetrahymena ribozyme reveal several local folding transitions. Biochemistry (1997) 0.90
In vitro suicide inhibition of self-splicing of a group I intron from Pneumocystis carinii by an N3' --> P5' phosphoramidate hexanucleotide. Proc Natl Acad Sci U S A (1999) 0.88
Recognition elements for 5' exon substrate binding to the Candida albicans group I intron. Biochemistry (2001) 0.87
Long-range cooperativity in molecular recognition of RNA by oligodeoxynucleotides with multiple C5-(1-propynyl) pyrimidines. J Am Chem Soc (2001) 0.87
Effect of a 5'-phosphate on the stability of triple helix. Nucleic Acids Res (1993) 0.86
Replacements of lysine 32 in yeast cytochrome c. Effects on the binding and reactivity with physiological partners. J Biol Chem (1988) 0.86
Long-range cooperativity due to C5-propynylation of oligopyrimidines enhances specific recognition by uridine of ribo-adenosine over ribo-guanosine. J Am Chem Soc (2001) 0.85
Guanosine binds to the Tetrahymena ribozyme in more than one step, and its 2'-OH and the nonbridging pro-Sp phosphoryl oxygen at the cleavage site are required for productive docking. Biochemistry (1997) 0.85
Sequence dependence for the energetics of terminal mismatches in ribooligonucleotides. Biochemistry (1987) 0.85