Comparative genomic analyses of the cyanobacterium, Lyngbya aestuarii BL J, a powerful hydrogen producer.

PubWeight™: 0.79‹?›

🔗 View Article (PMC 3858816)

Published in Front Microbiol on December 11, 2013

Authors

Ankita Kothari1, Michael Vaughn2, Ferran Garcia-Pichel1

Author Affiliations

1: School of Life Sciences, Arizona State University Tempe, AZ, USA.
2: Department of Chemistry and Biochemistry, Arizona State University Tempe, AZ, USA.

Articles cited by this

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97

The RAST Server: rapid annotations using subsystems technology. BMC Genomics (2008) 175.18

Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47

VMD: visual molecular dynamics. J Mol Graph (1996) 117.02

NIH Image to ImageJ: 25 years of image analysis. Nat Methods (2012) 84.41

A low-viscosity epoxy resin embedding medium for electron microscopy. J Ultrastruct Res (1969) 75.26

Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol (1993) 64.61

Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res (1996) 28.37

Comparative protein structure modeling using Modeller. Curr Protoc Bioinformatics (2006) 8.72

Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol Lett (2001) 8.45

Energetics of syntrophic cooperation in methanogenic degradation. Microbiol Mol Biol Rev (1997) 6.71

Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature (2008) 6.16

The MaSuRCA genome assembler. Bioinformatics (2013) 5.07

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels. Proteins (1992) 4.92

Microbial biosynthesis of alkanes. Science (2010) 4.74

Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas. Nature (1995) 4.54

Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res (2001) 4.27

Characterization of a gene controlling heterocyst differentiation in the cyanobacterium Anabaena 7120. Genes Dev (1991) 3.76

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation. Stand Genomic Sci (2011) 3.62

The Protein Data Bank. A computer-based archival file for macromolecular structures. Eur J Biochem (1977) 3.48

NtcA, a global nitrogen regulator from the cyanobacterium Synechococcus that belongs to the Crp family of bacterial regulators. Mol Microbiol (1992) 2.91

MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinformatics (2006) 2.81

Molecular characterization of an operon (hyp) necessary for the activity of the three hydrogenase isoenzymes in Escherichia coli. Mol Microbiol (1991) 2.62

Interactions of Listeria monocytogenes with mammalian cells during entry and actin-based movement: bacterial factors, cellular ligands and signaling. EMBO J (1998) 2.52

The role of microbial mats in the production of reduced gases on the early Earth. Nature (2001) 2.27

Cyanobacterial hydrogenases: diversity, regulation and applications. FEMS Microbiol Rev (2007) 2.26

The tricarboxylic acid cycle in cyanobacteria. Science (2011) 2.14

A soluble carotenoid protein involved in phycobilisome-related energy dissipation in cyanobacteria. Plant Cell (2006) 2.09

The hyp operon gene products are required for the maturation of catalytically active hydrogenase isoenzymes in Escherichia coli. Arch Microbiol (1992) 2.02

A stable lead by modification of Sato's method. J Electron Microsc (Tokyo) (1986) 2.01

Diel Migrations of Microorganisms within a Benthic, Hypersaline Mat Community. Appl Environ Microbiol (1994) 1.94

Molecular and phylogenetic characterization of pyruvate and 2-ketoisovalerate ferredoxin oxidoreductases from Pyrococcus furiosus and pyruvate ferredoxin oxidoreductase from Thermotoga maritima. J Bacteriol (1996) 1.83

Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina. Proc Natl Acad Sci U S A (2008) 1.70

The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center. Structure (1999) 1.69

Protistan diversity estimates based on 18S rDNA from seawater incubations in the Western North Atlantic. J Eukaryot Microbiol (2005) 1.65

Molecular characterization of cyanophycin synthetase, the enzyme catalyzing the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin). Eur J Biochem (1998) 1.65

Ammonium assimilation in cyanobacteria. Photosynth Res (2005) 1.57

Hydrogen Concentration Profiles at the Oxic-Anoxic Interface: a Microsensor Study of the Hindgut of the Wood-Feeding Lower Termite Reticulitermes flavipes (Kollar). Appl Environ Microbiol (1997) 1.50

Complete genome structure of the unicellular cyanobacterium Synechocystis sp. PCC6803. Plant Cell Physiol (1997) 1.48

Structural differences between the ready and unready oxidized states of [NiFe] hydrogenases. J Biol Inorg Chem (2005) 1.47

Flavodiiron proteins in oxygenic photosynthetic organisms: photoprotection of photosystem II by Flv2 and Flv4 in Synechocystis sp. PCC 6803. PLoS One (2009) 1.47

Molecular biological analysis of a bidirectional hydrogenase from cyanobacteria. Eur J Biochem (1995) 1.41

Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula. Proc Natl Acad Sci U S A (2011) 1.40

Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis. Structure (1997) 1.35

Microbial ultraviolet sunscreens. Nat Rev Microbiol (2011) 1.32

Optimization of metabolic capacity and flux through environmental cues to maximize hydrogen production by the cyanobacterium "Arthrospira (Spirulina) maxima". Appl Environ Microbiol (2008) 1.28

Bacterial persistence: some new insights into an old phenomenon. J Biosci (2008) 1.25

[NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 A and modelling studies of its interaction with the tetrahaem cytochrome c3. J Biol Inorg Chem (2001) 1.19

Underestimated biodiversity as a major explanation for the perceived rich secondary metabolite capacity of the cyanobacterial genus Lyngbya. Environ Microbiol (2011) 1.18

Expression of the isiA gene is essential for the survival of the cyanobacterium Synechococcus sp. PCC 7942 by protecting photosystem II from excess light under iron limitation. Mol Microbiol (1999) 1.15

Carbon monoxide and cyanide as intrinsic ligands to iron in the active site of [NiFe]-hydrogenases. NiFe(CN)2CO, Biology's way to activate H2. J Biol Chem (1999) 1.15

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J (2013) 1.14

Hydroxylamine reductase activity of the hybrid cluster protein from Escherichia coli. J Bacteriol (2002) 1.14

Microbial diversity of benthic mats along a tidal desiccation gradient. Environ Microbiol (2005) 1.12

Comparative characterization of two distinct hydrogenases from Anabaena sp. strain 7120. J Bacteriol (1981) 1.12

Hydroxylamine assimilation by Rhodobacter capsulatus E1F1. requirement of the hcp gene (hybrid cluster protein) located in the nitrate assimilation nas gene region for hydroxylamine reduction. J Biol Chem (2004) 1.12

Carboxyl-terminal processing of the cytoplasmic NAD-reducing hydrogenase of Alcaligenes eutrophus requires the hoxW gene product. J Bacteriol (1996) 1.09

Mutagenesis of hydrogenase accessory genes of Synechocystis sp. PCC 6803. Additional homologues of hypA and hypB are not active in hydrogenase maturation. FEBS J (2006) 1.05

Contemporaneous N(2) Fixation and Oxygenic Photosynthesis in the Nonheterocystous Mat-Forming Cyanobacterium Lyngbya aestuarii. Appl Environ Microbiol (1991) 1.03

The halotolerance and phylogeny of cyanobacteria with tightly coiled trichomes (Spirulina Turpin) and the description of Halospirulina tapeticola gen. nov., sp. nov. Int J Syst Evol Microbiol (2000) 1.03

Crystal structure of the hydrogenase maturating endopeptidase HYBD from Escherichia coli. J Mol Biol (1999) 0.99

The role of a gene cluster for trehalose metabolism in dehydration tolerance of the filamentous cyanobacterium Anabaena sp. PCC 7120. Microbiology (2006) 0.99

A comparative genomics approach to understanding the biosynthesis of the sunscreen scytonemin in cyanobacteria. BMC Genomics (2009) 0.99

Setting of the Circadian N(2)-Fixing Rhythm of the Prokaryotic Synechococcus sp. RF-1 while Its nif Gene Is Repressed. Plant Physiol (1991) 0.98

Fermentation and Sulfur Reduction in the Mat-Building Cyanobacterium Microcoleus chthonoplastes. Appl Environ Microbiol (1996) 0.95

Unusual gene arrangement of the bidirectional hydrogenase and functional analysis of its diaphorase subunit HoxU in respiration of the unicellular cyanobacterium anacystis nidulans Curr Microbiol (1998) 0.94

Multiple evidence for widespread and general occurrence of type-III PHA synthases in cyanobacteria and molecular characterization of the PHA synthases from two thermophilic cyanobacteria: Chlorogloeopsis fritschii PCC 6912 and Synechococcus sp. strain MA19. Microbiology (2001) 0.93

Photosynthetic accumulation of poly-(hydroxybutyrate) by cyanobacteria--the metabolism and potential for CO2 recycling. Int J Biol Macromol (1999) 0.92

An ATP-grasp ligase involved in the last biosynthetic step of the iminomycosporine shinorine in Nostoc punctiforme ATCC 29133. J Bacteriol (2011) 0.92

Involvement of the compatible solutes trehalose and sucrose in the response to salt stress of a cyanobacterial Scytonema species isolated from desert soils. Biochim Biophys Acta (1999) 0.91

Probing the origin of the metabolic precursor of the CO ligand in the catalytic center of [NiFe] hydrogenase. J Biol Chem (2011) 0.91

Diversity in hydrogen evolution from bidirectional hydrogenases in cyanobacteria from terrestrial, freshwater and marine intertidal environments. J Biotechnol (2012) 0.90

The auxiliary protein HypX provides oxygen tolerance to the soluble [NiFe]-hydrogenase of ralstonia eutropha H16 by way of a cyanide ligand to nickel. J Biol Chem (2004) 0.88

Polyhydroxyalkanoate (PHA) synthesis by Spirulina subsalsa from Gujarat coast of India. Int J Biol Macromol (2010) 0.85

Genome of the cyanobacterium Microcoleus vaginatus FGP-2, a photosynthetic ecosystem engineer of arid land soil biocrusts worldwide. J Bacteriol (2011) 0.85

Osmotic adjustment in Spirulina platensis. Planta (1985) 0.85

Cyanobacterial diversity in extreme environments in Baja California, Mexico: a polyphasic study. Int Microbiol (2001) 0.84

Carbon-13 NMR studies of salt shock-induced carbohydrate turnover in the marine cyanobacterium Agmenellum quadruplicatum. Plant Physiol (1986) 0.83

The marine cyanobacterium Crocosphaera watsonii WH8501 synthesizes the compatible solute trehalose by a laterally acquired OtsAB fusion protein. Environ Microbiol (2012) 0.82

Glycinebetaine as an osmoregulant and compatible solute in the marine cyanobacterium Spirulina subsalsa. Arch Biochem Biophys (1988) 0.75