Published in PLoS One on February 04, 2014
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Genomic signature of multidrug-resistant Salmonella enterica serovar typhi isolates related to a massive outbreak in Zambia between 2010 and 2012. J Clin Microbiol (2014) 0.97
Whole-Genome Sequencing Allows for Improved Identification of Persistent Listeria monocytogenes in Food-Associated Environments. Appl Environ Microbiol (2015) 0.88
It Is Not All about Single Nucleotide Polymorphisms: Comparison of Mobile Genetic Elements and Deletions in Listeria monocytogenes Genomes Links Cases of Hospital-Acquired Listeriosis to the Environmental Source. J Clin Microbiol (2015) 0.87
Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities. BMC Infect Dis (2015) 0.85
High resolution assembly and characterization of genomes of Canadian isolates of Salmonella Enteritidis. BMC Genomics (2014) 0.84
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GeneSippr: a rapid whole-genome approach for the identification and characterization of foodborne pathogens such as priority Shiga toxigenic Escherichia coli. PLoS One (2015) 0.83
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Whole-Genome Sequencing Detection of Ongoing Listeria Contamination at a Restaurant, Rhode Island, USA, 2014. Emerg Infect Dis (2016) 0.82
Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing. Clin Microbiol Rev (2016) 0.82
Emergence of a Clonal Lineage of Multidrug-Resistant ESBL-Producing Salmonella Infantis Transmitted from Broilers and Broiler Meat to Humans in Italy between 2011 and 2014. PLoS One (2015) 0.81
The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica. PeerJ (2014) 0.81
PGAdb-builder: A web service tool for creating pan-genome allele database for molecular fine typing. Sci Rep (2016) 0.80
Increasing Incidence of Salmonella in Australia, 2000-2013. PLoS One (2016) 0.80
The Lake Chad Basin, an Isolated and Persistent Reservoir of Vibrio cholerae O1: A Genomic Insight into the Outbreak in Cameroon, 2010. PLoS One (2016) 0.79
Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing. J Clin Microbiol (2015) 0.79
Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks. Front Microbiol (2016) 0.78
Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit. BMC Genomics (2015) 0.77
Detection, Characterization, and Typing of Shiga Toxin-Producing Escherichia coli. Front Microbiol (2016) 0.77
Transcriptome Profiling of Antimicrobial Resistance in Pseudomonas aeruginosa. Antimicrob Agents Chemother (2016) 0.76
Comparison between Salmonella enterica Serotype Enteritidis Genotyping Methods and Phage Type. J Clin Microbiol (2015) 0.75
Identification of Five Novel Salmonella Typhi-Specific Genes as Markers for Diagnosis of Typhoid Fever Using Single-Gene Target PCR Assays. Biomed Res Int (2016) 0.75
A Whole-Genome Sequencing Approach To Study Cefoxitin-Resistant Salmonella enterica Serovar Heidelberg Isolates from Various Sources. Antimicrob Agents Chemother (2017) 0.75
Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014. BMC Microbiol (2016) 0.75
Genomic analysis of Salmonella enterica serotype Paratyphi A during an outbreak in Cambodia, 2013-2015. Microb Genom (2016) 0.75
Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods. BMC Genomics (2017) 0.75
Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis. Clin Microbiol Rev (2017) 0.75
Genome Target Evaluator (GTEvaluator): A workflow exploiting genome dataset to measure the sensitivity and specificity of genetic markers. PLoS One (2017) 0.75
Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013. Appl Environ Microbiol (2017) 0.75
Investigation of Outbreaks of Salmonella enterica Serovar Typhimurium and Its Monophasic Variants Using Whole-Genome Sequencing, Denmark. Emerg Infect Dis (2017) 0.75
Validation and Implementation of Clinical Laboratory Improvements Act (CLIA)-Compliant Whole Genome Sequencing in Public Health Microbiology Laboratory. J Clin Microbiol (2017) 0.75
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