Published in BMC Bioinformatics on October 22, 2013
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Scaling drug indication curation through crowdsourcing. Database (Oxford) (2015) 0.97
Towards drug repositioning: a unified computational framework for integrating multiple aspects of drug similarity and disease similarity. AMIA Annu Symp Proc (2014) 0.89
Drug repositioning by integrating target information through a heterogeneous network model. Bioinformatics (2014) 0.82
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Gene Ontology and KEGG Pathway Enrichment Analysis of a Drug Target-Based Classification System. PLoS One (2015) 0.80
Matrix Factorization-Based Prediction of Novel Drug Indications by Integrating Genomic Space. Comput Math Methods Med (2015) 0.76
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Automatic extraction of drug indications from FDA drug labels. AMIA Annu Symp Proc (2014) 0.75
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ApoE-directed therapeutics rapidly clear β-amyloid and reverse deficits in AD mouse models. Science (2012) 10.42
Predicting new molecular targets for known drugs. Nature (2009) 9.71
The BioPAX community standard for pathway data sharing. Nat Biotechnol (2010) 9.19
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Discovery and preclinical validation of drug indications using compendia of public gene expression data. Sci Transl Med (2011) 5.77
Diagnosing the decline in pharmaceutical R&D efficiency. Nat Rev Drug Discov (2012) 5.55
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease. Sci Transl Med (2011) 5.30
Discovery of drug mode of action and drug repositioning from transcriptional responses. Proc Natl Acad Sci U S A (2010) 4.35
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A network view of disease and compound screening. Nat Rev Drug Discov (2009) 2.90
Human disease-drug network based on genomic expression profiles. PLoS One (2009) 2.62
Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts. PLoS Comput Biol (2009) 1.90
A pathway-based view of human diseases and disease relationships. PLoS One (2009) 1.52
A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. PLoS Genet (2012) 1.52
Bugs, drugs and chemical genomics. Nat Chem Biol (2011) 1.15
Drug discovery in a multidimensional world: systems, patterns, and networks. J Cardiovasc Transl Res (2010) 1.11
Discovering modulators of gene expression. Nucleic Acids Res (2010) 1.07
Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer. PLoS Comput Biol (2012) 1.06
Computational approaches for drug repositioning and combination therapy design. J Bioinform Comput Biol (2010) 1.00
Pathway analysis for design of promiscuous drugs and selective drug mixtures. Curr Drug Discov Technol (2006) 0.91
Medicine. Old drug, new hope for Alzheimer's disease. Science (2012) 0.89
IL-1 receptor antagonist anakinra enhances tumour growth inhibition in mice receiving peptide vaccination and beta-(1-3),(1-6)-D-glucan. Anticancer Res (2010) 0.86
Chemical kinomics: a powerful strategy for target deconvolution. BMB Rep (2010) 0.80
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Overview of BioCreative II gene normalization. Genome Biol (2008) 5.05
Understanding PubMed user search behavior through log analysis. Database (Oxford) (2009) 3.27
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics (2011) 3.03
PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res (2013) 3.02
DNorm: disease name normalization with pairwise learning to rank. Bioinformatics (2013) 2.83
OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics (2008) 2.81
Recommending MeSH terms for annotating biomedical articles. J Am Med Inform Assoc (2011) 2.77
BioC: a minimalist approach to interoperability for biomedical text processing. Database (Oxford) (2013) 2.69
Overview of the BioCreative III Workshop. BMC Bioinformatics (2011) 2.31
BioCreative III interactive task: an overview. BMC Bioinformatics (2011) 2.16
Concept recognition for extracting protein interaction relations from biomedical text. Genome Biol (2008) 1.93
Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction. J Biomed Inform (2010) 1.91
Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies. Pac Symp Biocomput (2006) 1.90
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts. Database (Oxford) (2012) 1.89
tmVar: a text mining approach for extracting sequence variants in biomedical literature. Bioinformatics (2013) 1.87
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database (Oxford) (2013) 1.82
SR4GN: a species recognition software tool for gene normalization. PLoS One (2012) 1.57
Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Nucleic Acids Res (2004) 1.46
Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE. Database (Oxford) (2012) 1.32
Large-scale event extraction from literature with multi-level gene normalization. PLoS One (2013) 1.30
Extraction of data deposition statements from the literature: a method for automatically tracking research results. Bioinformatics (2011) 1.27
BioCreative-2012 virtual issue. Database (Oxford) (2012) 1.26
A survey of current trends in computational drug repositioning. Brief Bioinform (2015) 1.18
Extracting Rx information from clinical narrative. J Am Med Inform Assoc (2010) 1.14
Mutations in POFUT1, encoding protein O-fucosyltransferase 1, cause generalized Dowling-Degos disease. Am J Hum Genet (2013) 1.13
Genotyping of bovine viral diarrhea viruses from cattle in China between 2005 and 2008. Vet Microbiol (2009) 1.11
A context-blocks model for identifying clinical relationships in patient records. BMC Bioinformatics (2011) 1.10
Semantic role labeling for protein transport predicates. BMC Bioinformatics (2008) 1.10
Click-words: learning to predict document keywords from a user perspective. Bioinformatics (2010) 1.09
MiR-221 expression affects invasion potential of human prostate carcinoma cell lines by targeting DVL2. Med Oncol (2011) 1.07
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information. Database (Oxford) (2012) 1.05
Prevalent and rare mutations in IL-36RN gene in Chinese patients with generalized pustular psoriasis and psoriasis vulgaris. J Invest Dermatol (2013) 1.05
Systematic identification of pharmacogenomics information from clinical trials. J Biomed Inform (2012) 1.03
Community challenges in biomedical text mining over 10 years: success, failure and the future. Brief Bioinform (2015) 1.00
Simultaneous fluorescence yield and lifetime tomography from time-resolved transmittances of small-animal-sized phantom. Appl Opt (2010) 0.99
microRNA-103a functions as a mechanosensitive microRNA to inhibit bone formation through targeting Runx2. J Bone Miner Res (2015) 0.99
Aberrant expression of β-catenin and E-cadherin is correlated with poor prognosis of nasopharyngeal cancer. Hum Pathol (2013) 0.98
Investigation on BRCA1 SNPs and its effects on mastitis in Chinese commercial cattle. Gene (2012) 0.91
Crowdsourcing in biomedicine: challenges and opportunities. Brief Bioinform (2015) 0.91
MicroRNA-26 was decreased in rat cardiac hypertrophy model and may be a promising therapeutic target. J Cardiovasc Pharmacol (2013) 0.90
Deletion of the late cornified envelope genes LCE3C and LCE3B is associated with psoriasis in a Chinese population. J Invest Dermatol (2011) 0.89
Involvement of the role of Chk1 in lithium-induced G2/M phase cell cycle arrest in hepatocellular carcinoma cells. J Cell Biochem (2008) 0.89
BRCA1: a new candidate gene for bovine mastitis and its association analysis between single nucleotide polymorphisms and milk somatic cell score. Mol Biol Rep (2012) 0.88
Author keywords in biomedical journal articles. AMIA Annu Symp Proc (2010) 0.88
Auxin distribution is differentially affected by nitrate in roots of two rice cultivars differing in responsiveness to nitrogen. Ann Bot (2013) 0.88
Effects of DGAT1 gene on meat and carcass fatness quality in Chinese commercial cattle. Mol Biol Rep (2012) 0.87
SNPs identification and its correlation analysis with milk somatic cell score in bovine MBL1 gene. Mol Biol Rep (2012) 0.87
N-acetylcysteine reduces inflammation in the small intestine by regulating redox, EGF and TLR4 signaling. Amino Acids (2012) 0.86
Nuclear entry of active caspase-3 is facilitated by its p3-recognition-based specific cleavage activity. Cell Res (2010) 0.86
C²Maps: a network pharmacology database with comprehensive disease-gene-drug connectivity relationships. BMC Genomics (2012) 0.84
SimConcept: a hybrid approach for simplifying composite named entities in biomedical text. IEEE J Biomed Health Inform (2015) 0.84
Perforated sarcomatoid carcinoma of the jejunum: Case report. Oncol Lett (2013) 0.82
Do individuals with and without autism spectrum disorder scan faces differently? A new multi-method look at an existing controversy. Autism Res (2013) 0.82
Functional analysis of recently identified mutations in eukaryotic translation initiation factor 2Bɛ (eIF2Bɛ) identified in Chinese patients with vanishing white matter disease. J Hum Genet (2011) 0.82
CD33⁺/p-STAT1⁺ double-positive cell as a prognostic factor for stage IIIa gastric cancer. Med Oncol (2013) 0.82
Abnormality in face scanning by children with autism spectrum disorder is limited to the eye region: evidence from multi-method analyses of eye tracking data. J Vis (2013) 0.81
An astrocyte regenerative response from vimentin-containing cells in the spinal cord of amyotrophic lateral sclerosis's disease-like transgenic (G93A SOD1) mice. Neurodegener Dis (2015) 0.81
Telomerase reverse transcriptase upregulation attenuates astrocyte proliferation and promotes neuronal survival in the hypoxic-ischemic rat brain. Stroke (2011) 0.80
Influence of perineural invasion on survival and recurrence in patients with resected pancreatic cancer. Asian Pac J Cancer Prev (2013) 0.79
Accessing biomedical literature in the current information landscape. Methods Mol Biol (2014) 0.79
The protective effect of geniposide on human neuroblastoma cells in the presence of formaldehyde. BMC Complement Altern Med (2013) 0.79
Crowdsourcing and mining crowd data. Pac Symp Biocomput (2015) 0.79
Single nucleotide polymorphism of CACNA2D1 gene and its association with milk somatic cell score in cattle. Mol Biol Rep (2011) 0.79
The effect of implementing "medicines zero mark-up policy" in Beijing community health facilities. South Med Rev (2012) 0.79
Replication of association between interleukin-23 receptor (IL-23R) and its ligand (IL-12B) polymorphisms and psoriasis in the Chinese Han population. Hum Immunol (2010) 0.79
Combined hemoglobin and fluorescence diffuse optical tomography for breast tumor diagnosis: a pilot study on time-domain methodology. Biomed Opt Express (2013) 0.78
Automatic identification and normalization of dosage forms in drug monographs. BMC Med Inform Decis Mak (2012) 0.78
The use of anti-human T lymphocyte porcine immunoglobulin and cyclosporine a to treat patients with acquired severe aplastic anemia. Acta Haematol (2010) 0.78
Disease gene-fishing in molecular interaction networks: a case study in colorectal cancer. Conf Proc IEEE Eng Med Biol Soc (2009) 0.78
Finely tuning MOFs towards high-performance post-combustion CO2 capture materials. Chem Commun (Camb) (2015) 0.77
The protective effects of human umbilical cord mesenchymal stem cells on damaged ovarian function: A comparative study. Biosci Trends (2016) 0.77
Co-assembly of photosystem II/reduced graphene oxide multilayered biohybrid films for enhanced photocurrent. Nanoscale (2015) 0.77
Characterization of microRNA expression profiling in peripheral blood lymphocytes in rats with experimental autoimmune uveitis. Inflamm Res (2015) 0.77
A CT-analogous scheme for time-domain diffuse fluorescence tomography. J Xray Sci Technol (2012) 0.77
Protection of chronic intermittent hypobaric hypoxia against collagen-induced arthritis in rat through increasing apoptosis. Sheng Li Xue Bao (2011) 0.77
An evaluation of the links between microRNA, autophagy, and epilepsy. Rev Neurosci (2015) 0.76
Nitric oxide synthase in hypoxic or ischemic brain injury. Rev Neurosci (2015) 0.76
Detoxification of Jatropha curcas kernel cake by a novel Streptomyces fimicarius strain. J Hazard Mater (2013) 0.76
The Top Chinese Mobile Health Apps: A Systematic Investigation. J Med Internet Res (2016) 0.75
Efficacy of Neo-Adjuvant Chemoradiotherapy for Resectable Pancreatic Adenocarcinoma: A PRISMA-Compliant Meta-Analysis and Systematic Review. Medicine (Baltimore) (2016) 0.75
Disrupted Intrinsic Local Synchronization in Poststroke Aphasia. Medicine (Baltimore) (2016) 0.75
[Secretable eukaryotic expression of recombinant chicken Iglambda and preparation of monoclonal antibodies against chicken Iglambda]. Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi (2008) 0.75
Expanded porous MOF-505 analogue exhibiting large hydrogen storage capacity and selective carbon dioxide adsorption. Inorg Chem (2013) 0.75
Characterization of the aryl hydrocarbon receptor (AhR) pathway in and mechanistic exploration of the reduced sensitivity of AhR2a. Environ Sci Technol (2019) 0.75
High-performance liquid chromatographic determination of phenolic compounds in natural water coupled with on-line flow injection membrane extraction-preconcentration. J Sep Sci (2006) 0.75
[Comparison of human cord blood mesenchymal stem cell culture between using human umbilical cord plasma and using fetal bovine serum]. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi (2013) 0.75
A textual representation scheme for identifying clinical relationships in patient records. Proc Int Conf Mach Learn Appl (2011) 0.75
Indocyanine Green Derivative Covalently Conjugated with Gold Nanorods for Multimodal Phototherapy of Fibrosarcoma Cells. J Biomed Nanotechnol (2015) 0.75
Fine-tuning pore size by shifting coordination sites of ligands and surface polarization of metal-organic frameworks to sharply enhance the selectivity for CO2. J Am Chem Soc (2012) 0.75
New coherent laser communication detection scheme based on channel-switching method. Appl Opt (2015) 0.75
Formation of a metal-organic framework with high surface area and gas uptake by breaking edges off truncated cuboctahedral cages. Angew Chem Int Ed Engl (2013) 0.75
Optical image processing for synthetic-aperture imaging ladar based on two-dimensional Fourier transform. Appl Opt (2014) 0.75
Association of IL-12B gene rs6887695 polymorphism with hereditary susceptibility and clinical characterization of psoriasis vulgaris in the Chinese Han population. Arch Dermatol Res (2013) 0.75
[Analysis of genetic diversity among silver carp populations in the middle and lower Yangtse River using thirty microsatellite markers]. Yi Chuan (2007) 0.75
[Analysis of risk factors for contact dermatitis in pig farm workers]. Zhonghua Lao Dong Wei Sheng Zhi Ye Bing Za Zhi (2014) 0.75
Summarizing Documents by Measuring the Importance of a Subset of Vertices within a Graph. Proc IEEE WIC ACM Int Conf Web Intell Intell Agent Technol (2009) 0.75