Published in PLoS One on March 10, 2014
Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita. PLoS One (2015) 1.44
Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef). BMC Genomics (2014) 0.89
Optimal assembly strategies of transcriptome related to ploidies of eukaryotic organisms. BMC Genomics (2015) 0.87
RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit. BMC Genomics (2015) 0.83
SWEEP: A Tool for Filtering High-Quality SNPs in Polyploid Crops. G3 (Bethesda) (2015) 0.83
De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection. PLoS One (2016) 0.80
Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis. BMC Genomics (2015) 0.80
Characterization of a second secologanin synthase isoform producing both secologanin and secoxyloganin allows enhanced de novo assembly of a Catharanthus roseus transcriptome. BMC Genomics (2015) 0.80
High-throughput sequencing and de novo transcriptome assembly of Swertia japonica to identify genes involved in the biosynthesis of therapeutic metabolites. Plant Cell Rep (2016) 0.77
Identification of Immune-Related Genes and Development of SSR/SNP Markers from the Spleen Transcriptome of Schizothorax prenanti. PLoS One (2016) 0.77
Functional dissection of a plant Argonaute. Nucleic Acids Res (2015) 0.77
A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea. Front Plant Sci (2016) 0.76
Genomic sequencing and microsatellite marker development for Boswellia papyrifera, an economically important but threatened tree native to dry tropical forests. AoB Plants (2015) 0.76
The Evolution of the FT/TFL1 Genes in Amaranthaceae and Their Expression Patterns in the Course of Vegetative Growth and Flowering in Chenopodium rubrum. G3 (Bethesda) (2016) 0.75
KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba). PLoS One (2017) 0.75
De Novo Transcriptome Assembly and Sex-Biased Gene Expression in the Cyclical Parthenogenetic Daphnia galeata. Genome Biol Evol (2016) 0.75
Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies. PeerJ (2017) 0.75
Sequencing and characterization of leaf transcriptomes of six diploid Nicotiana species. J Biol Res (Thessalon) (2016) 0.75
Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms. BMC Bioinformatics (2016) 0.75
Comparison of De Novo Transcriptome Assemblers and k-mer Strategies Using the Killifish, Fundulus heteroclitus. PLoS One (2016) 0.75
Insights into the Sesquiterpenoid Pathway by Metabolic Profiling and De novo Transcriptome Assembly of Stem-Chicory (Cichorium intybus Cultigroup "Catalogna"). Front Plant Sci (2016) 0.75
Transcriptomic resources and marker validation for diploid and polyploid Veronica (Plantaginaceae) from New Zealand and Europe. Appl Plant Sci (2016) 0.75
De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes. PLoS One (2015) 0.75
Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae). BMC Genomics (2017) 0.75
A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly. Plant Methods (2016) 0.75
De novo transcriptome of the cosmopolitan dinoflagellate Amphidinium carterae to identify enzymes with biotechnological potential. Sci Rep (2017) 0.75
Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ. BMC Genomics (2017) 0.75
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Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data. BMC Genomics (2012) 1.54
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De novo transcriptome sequence assembly and analysis of RNA silencing genes of Nicotiana benthamiana. PLoS One (2013) 1.48
Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol (2013) 1.23
Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants. BMC Genomics (2012) 1.17
Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis. Genome Biol (2013) 1.10
Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat. BMC Genomics (2012) 1.05
Virus-induced gene silencing of argonaute genes in Nicotiana benthamiana demonstrates that extensive systemic silencing requires Argonaute1-like and Argonaute4-like genes. Plant Physiol (2006) 1.04
Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat. BMC Genomics (2013) 1.01
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Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective. BMC Genomics (2012) 0.95
Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat. BMC Bioinformatics (2013) 0.81