Published in Genes (Basel) on June 03, 2010
Differential expression of circulating microRNAs according to severity of colorectal neoplasia. Transl Res (2015) 1.50
In silico identification of plant miRNAs in mammalian breast milk exosomes--a small step forward? PLoS One (2014) 1.09
Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing. Methods (2012) 1.04
miRTrail--a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinformatics (2012) 1.01
Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation. Bioinformatics (2013) 0.97
Transcriptome-wide identification and characterization of microRNAs from castor bean (Ricinus communis L.). PLoS One (2013) 0.88
High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics (2013) 0.87
The Role of MicroRNAs in Diabetic Complications-Special Emphasis on Wound Healing. Genes (Basel) (2014) 0.86
Embedding siRNA sequences targeting apolipoprotein B100 in shRNA and miRNA scaffolds results in differential processing and in vivo efficacy. Mol Ther (2012) 0.86
Quantification of microRNA expression with next-generation sequencing. Curr Protoc Mol Biol (2013) 0.84
A new strategy for identification of highly conserved microRNAs in non-model insect, Spodoptera litura. Int J Mol Sci (2012) 0.83
Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite. Plant Mol Biol (2013) 0.82
Comprehensive analysis of human small RNA sequencing data provides insights into expression profiles and miRNA editing. RNA Biol (2014) 0.82
Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa. Planta (2013) 0.81
Association between risk of oral precancer and genetic variations in microRNA and related processing genes. J Biomed Sci (2014) 0.80
Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow. Nucleic Acids Res (2016) 0.77
Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution. Front Physiol (2015) 0.76
Identification and comparative analysis of complement C3-associated microRNAs in immune response of Apostichopus japonicus by high-throughput sequencing. Sci Rep (2015) 0.76
Identification of Ice Plant (Mesembryanthemum crystallinum L.) MicroRNAs Using RNA-Seq and Their Putative Roles in High Salinity Responses in Seedlings. Front Plant Sci (2016) 0.76
SMiRK: an Automated Pipeline for miRNA Analysis. Source J Genom (2015) 0.75
Evaluation of microRNA alignment techniques. RNA (2016) 0.75
Bioinformatics of Cancer ncRNA in High Throughput Sequencing: Present State and Challenges. Front Genet (2012) 0.75
Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs. Front Microbiol (2017) 0.75
Identification and characterization of microRNAs in Humulus lupulus using high-throughput sequencing and their response to Citrus bark cracking viroid (CBCVd) infection. BMC Genomics (2016) 0.75
Circulating MicroRNAs in Serum from Cattle Challenged with Bovine Viral Diarrhea Virus. Front Genet (2017) 0.75
Identification and Characterization of miRNA Transcriptome in Asiatic Cotton (Gossypium arboreum) Using High Throughput Sequencing. Front Plant Sci (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
MicroRNAs: genomics, biogenesis, mechanism, and function. Cell (2004) 198.59
Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94
Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res (2008) 157.44
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell (2005) 96.87
SOAP: short oligonucleotide alignment program. Bioinformatics (2008) 68.13
A greedy algorithm for aligning DNA sequences. J Comput Biol (2000) 47.89
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science (2001) 44.16
SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics (2009) 39.47
miRBase: tools for microRNA genomics. Nucleic Acids Res (2007) 38.61
Principles of microRNA-target recognition. PLoS Biol (2005) 23.70
MicroRNA targets in Drosophila. Genome Biol (2003) 23.59
MicroRNA genes are transcribed by RNA polymerase II. EMBO J (2004) 20.65
MicroRNA maturation: stepwise processing and subcellular localization. EMBO J (2002) 19.47
Fast and effective prediction of microRNA/target duplexes. RNA (2004) 18.10
The microRNAs of Caenorhabditis elegans. Genes Dev (2003) 17.70
The microRNA.org resource: targets and expression. Nucleic Acids Res (2007) 16.26
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res (2009) 12.09
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res (2008) 10.18
Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol (2008) 10.17
A genome-wide map of conserved microRNA targets in C. elegans. Curr Biol (2006) 10.14
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res (2008) 10.10
miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res (2008) 8.97
miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res (2008) 6.30
The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res (2008) 5.65
DIANA-microT web server: elucidating microRNA functions through target prediction. Nucleic Acids Res (2009) 5.23
Limitations and possibilities of small RNA digital gene expression profiling. Nat Methods (2009) 4.34
mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. Nat Methods (2008) 3.88
miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. BMC Bioinformatics (2009) 2.22
miTarget: microRNA target gene prediction using a support vector machine. BMC Bioinformatics (2006) 2.08
Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing. RNA (2009) 1.96
PMRD: plant microRNA database. Nucleic Acids Res (2009) 1.94
deepBase: a database for deeply annotating and mining deep sequencing data. Nucleic Acids Res (2009) 1.78
Intronic microRNAs. Biochem Biophys Res Commun (2005) 1.35
Analysis of deep sequencing microRNA expression profile from human embryonic stem cells derived mesenchymal stem cells reveals possible role of let-7 microRNA family in downstream targeting of hepatic nuclear factor 4 alpha. BMC Genomics (2010) 1.25
Bioimaging of the unbalanced expression of microRNA9 and microRNA9* during the neuronal differentiation of P19 cells. FEBS J (2008) 1.17