Published in PLoS One on September 26, 2014
RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol (2015) 2.23
The Ancient Evolutionary History of Polyomaviruses. PLoS Pathog (2016) 1.12
First Complete Genome Sequence of Cherry virus A. Genome Announc (2016) 0.90
Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins. Front Microbiol (2015) 0.90
Begomovirus-Associated Satellite DNA Diversity Captured Through Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae). Viruses (2016) 0.89
Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds. Viruses (2015) 0.88
Local Virus Extinctions following a Host Population Bottleneck. J Virol (2015) 0.87
Complete Sequence of the Smallest Polyomavirus Genome, Giant Guitarfish (Rhynchobatus djiddensis) Polyomavirus 1. Genome Announc (2016) 0.86
Distinct Viral Lineages from Fish and Amphibians Reveal the Complex Evolutionary History of Hepadnaviruses. J Virol (2016) 0.85
Characterization of Non-coding DNA Satellites Associated with Sweepoviruses (Genus Begomovirus, Geminiviridae) - Definition of a Distinct Class of Begomovirus-Associated Satellites. Front Microbiol (2016) 0.83
Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae. Virus Evol (2017) 0.83
Plant viruses of the Amalgaviridae family evolved via recombination between viruses with double-stranded and negative-strand RNA genomes. Biol Direct (2015) 0.81
Discovery, Prevalence, and Persistence of Novel Circular Single-Stranded DNA Viruses in the Ctenophores Mnemiopsis leidyi and Beroe ovata. Front Microbiol (2015) 0.81
A diverse group of small circular ssDNA viral genomes in human and non-human primate stools. Virus Evol (2015) 0.79
Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family. Front Cell Infect Microbiol (2015) 0.79
Expansion of amphibian intronless interferons revises the paradigm for interferon evolution and functional diversity. Sci Rep (2016) 0.78
Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar. BMC Evol Biol (2016) 0.78
Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan. PLoS One (2016) 0.78
Feline panleukopenia virus in cerebral neurons of young and adult cats. BMC Vet Res (2016) 0.78
The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events. Virus Evol (2015) 0.77
Alfalfa Leaf Curl Virus: an Aphid-Transmitted Geminivirus. J Virol (2015) 0.77
Geminivirus data warehouse: a database enriched with machine learning approaches. BMC Bioinformatics (2017) 0.76
Analysis of intra-host genetic diversity of Prunus necrotic ringspot virus (PNRSV) using amplicon next generation sequencing. PLoS One (2017) 0.76
Complete Genome Sequence of Alternanthera mosaic virus, Isolated from Achyranthes bidentata in Asia. Genome Announc (2016) 0.76
Avian Polyomavirus Genome Sequences Recovered from Parrots in Captive Breeding Facilities in Poland. Genome Announc (2015) 0.76
New Type of Papillomavirus and Novel Circular Single Stranded DNA Virus Discovered in Urban Rattus norvegicus Using Circular DNA Enrichment and Metagenomics. PLoS One (2015) 0.76
A new gyrovirus in human feces. Virus Genes (2015) 0.76
Diversity, Mutation and Recombination Analysis of Cotton Leaf Curl Geminiviruses. PLoS One (2016) 0.76
Genome Sequence of Euphorbia mosaic virus from Passionfruit and Euphorbia heterophylla in Florida. Genome Announc (2017) 0.75
Novel Circular Single-Stranded DNA Viruses among an Asteroid, Echinoid and Holothurian (Phylum: Echinodermata). PLoS One (2016) 0.75
A comprehensive framework for functional diversity patterns of marine chromophytic phytoplankton using rbcL phylogeny. Sci Rep (2016) 0.75
Apparent competition drives community-wide parasitism rates and changes in host abundance across ecosystem boundaries. Nat Commun (2016) 0.75
Association of tomato leaf curl Sudan virus with leaf curl disease of tomato in Jeddah, Saudi Arabia. Virusdisease (2016) 0.75
Desmodium mottle virus, the first legumovirus (genus Begomovirus) from East Africa. Arch Virol (2017) 0.75
Feline Immunodeficiency Virus Cross-Species Transmission: Implications for Emergence of New Lentiviral Infections. J Virol (2017) 0.75
Genomic Characterization of Recent Chicken Anemia Virus Isolates in China. Front Microbiol (2017) 0.75
A Novel Strain of Tomato Leaf Curl New Delhi Virus Has Spread to the Mediterranean Basin. Viruses (2016) 0.75
Deinbollia mosaic virus: a novel begomovirus infecting the sapindaceous weed Deinbollia borbonica in Kenya and Tanzania. Arch Virol (2017) 0.75
Genome Sequence of a Diverse Goose Circovirus Recovered from Greylag Goose. Genome Announc (2015) 0.75
Identification of IFITM1 and IFITM3 in Goose: Gene Structure, Expression Patterns, and Immune Reponses against Tembusu Virus Infection. Biomed Res Int (2017) 0.75
High genetic homogeneity points to a single introduction event responsible for invasion of Cotton leaf curl Multan virus and its associated betasatellite into China. Virol J (2015) 0.75
A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina. Arch Virol (2016) 0.75
Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins. Virus Evol (2017) 0.75
Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion. Virol J (2017) 0.75
Molecular and biological characterization of a new Tomato mild yellow leaf curl Aragua virus strain producing severe symptoms in tomato. Virus Genes (2017) 0.75
The recent importation of Grapevine Pinot gris virus into Australia. Virus Genes (2017) 0.75
Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae. BMC Bioinformatics (2017) 0.75
Generic Amplicon Deep Sequencing to Determine Ilarvirus Species Diversity in Australian Prunus. Front Microbiol (2017) 0.75
Characterization of a Begomovirus-Betasatellite Complex, Producing Defective Molecules in Spinach (Spinacia oleracea L.), a New Host for Begomovirus and Betasatellite Complex in Pakistan. Plant Pathol J (2017) 0.75
Comparative transmission of Bhendi yellow vein mosaic virus by two cryptic species of the whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae). 3 Biotech (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol (1970) 155.96
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol (2013) 34.34
MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res (2005) 31.64
A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res (1999) 12.56
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol (2014) 11.26
Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol (2008) 3.73
An enhanced RNA alignment benchmark for sequence alignment programs. Algorithms Mol Biol (2006) 2.35
A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol (2013) 1.69
Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus. Arch Virol (2014) 1.38
Novel myco-like DNA viruses discovered in the faecal matter of various animals. Virus Res (2013) 1.35
Partitioning the genetic diversity of a virus family: approach and evaluation through a case study of picornaviruses. J Virol (2012) 1.31
Settling the intractability of multiple alignment. J Comput Biol (2006) 1.30
High global diversity of cycloviruses amongst dragonflies. J Gen Virol (2013) 1.20
Making automated multiple alignments of very large numbers of protein sequences. Bioinformatics (2013) 1.11
PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses. Viruses (2012) 1.09
A distinct strain of chickpea chlorotic dwarf virus (genus Mastrevirus, family Geminiviridae) identified in cotton plants affected by leaf curl disease. Arch Virol (2013) 0.99
Diverse small circular single-stranded DNA viruses identified in a freshwater pond on the McMurdo Ice Shelf (Antarctica). Infect Genet Evol (2014) 0.95
Revisiting the classification of curtoviruses based on genome-wide pairwise identity. Arch Virol (2014) 0.93
Identification and molecular characterization of a single-stranded circular DNA virus with similarities to Sclerotinia sclerotiorum hypovirulence-associated DNA virus 1. Arch Virol (2013) 0.91
A novel papillomavirus in Adélie penguin (Pygoscelis adeliae) faeces sampled at the Cape Crozier colony, Antarctica. J Gen Virol (2014) 0.89
Isolation and molecular characterization of a novel picornavirus from baitfish in the USA. PLoS One (2014) 0.88
Novel circular DNA viruses identified in Procordulia grayi and Xanthocnemis zealandica larvae using metagenomic approaches. Infect Genet Evol (2014) 0.88
Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses. J Virol (2013) 0.88
Identification and characterisation of a highly divergent geminivirus: evolutionary and taxonomic implications. Virus Res (2013) 0.88
Avihepadnavirus diversity in parrots is comparable to that found amongst all other avian species. Virology (2013) 0.88
Genome diversity and evidence of recombination and reassortment in nanoviruses from Europe. J Gen Virol (2014) 0.86
Diversity of beet curly top Iran virus isolated from different hosts in Iran. Virus Genes (2013) 0.84
Pigeon circoviruses display patterns of recombination, genomic secondary structure and selection similar to those of beak and feather disease viruses. J Gen Virol (2014) 0.84
Begomovirus diversity in tomato crops and weeds in Ecuador and the detection of a recombinant isolate of rhynchosia golden mosaic Yucatan virus infecting tomato. Arch Virol (2014) 0.83
Genetic structure and molecular variability of potato virus M populations. Arch Virol (2014) 0.83
Complete genome sequence of a novel monopartite begomovirus infecting sweet potato in China. Arch Virol (2014) 0.82
A high degree of African streak virus diversity within Nigerian maize fields includes a new mastrevirus from Axonopus compressus. Arch Virol (2014) 0.82
Genetic diversity and host range studies of turnip curly top virus. Virus Genes (2012) 0.81
Complete genome sequence of Jacquemontia yellow mosaic virus, a novel begomovirus from Venezuela related to other New World bipartite begomoviruses infecting Convolvulaceae. Arch Virol (2014) 0.79
Response of chickpea genotypes to Agrobacterium-mediated delivery of Chickpea chlorotic dwarf virus (CpCDV) genome and identification of resistance source. Appl Microbiol Biotechnol (2013) 0.79
Association of a distinct strain of hollyhock yellow vein mosaic virus and Ludwigia leaf distortion betasatellite with yellow vein mosaic disease of hollyhock (Alcea rosea) in India. Arch Virol (2014) 0.79
Isolation and molecular characterization of a distinct begomovirus and its associated betasatellite infecting Hedyotis uncinella (Hook. et Arn.) in Vietnam. Virus Genes (2014) 0.78