Published in IEEE J Biomed Health Inform on April 13, 2015
TaggerOne: joint named entity recognition and normalization with semi-Markov Models. Bioinformatics (2016) 1.04
Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine. PLoS Comput Biol (2016) 0.75
Mining chemical patents with an ensemble of open systems. Database (Oxford) (2016) 0.75
Tagging gene and protein names in biomedical text. Bioinformatics (2002) 10.03
GENIA corpus--semantically annotated corpus for bio-textmining. Bioinformatics (2003) 8.89
Overview of BioCreative II gene normalization. Genome Biol (2008) 5.05
Understanding PubMed user search behavior through log analysis. Database (Oxford) (2009) 3.27
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics (2011) 3.03
PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res (2013) 3.02
The gene normalization task in BioCreative III. BMC Bioinformatics (2011) 2.89
Inter-species normalization of gene mentions with GNAT. Bioinformatics (2008) 2.86
DNorm: disease name normalization with pairwise learning to rank. Bioinformatics (2013) 2.83
OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics (2008) 2.81
ChemSpot: a hybrid system for chemical named entity recognition. Bioinformatics (2012) 2.41
Overview of the BioCreative III Workshop. BMC Bioinformatics (2011) 2.31
High-performance gene name normalization with GeNo. Bioinformatics (2009) 2.26
Chemical name to structure: OPSIN, an open source solution. J Chem Inf Model (2011) 2.15
tmChem: a high performance approach for chemical named entity recognition and normalization. J Cheminform (2015) 1.96
The CHEMDNER corpus of chemicals and drugs and its annotation principles. J Cheminform (2015) 1.96
Abbreviation definition identification based on automatic precision estimates. BMC Bioinformatics (2008) 1.91
Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction. J Biomed Inform (2010) 1.91
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts. Database (Oxford) (2012) 1.89
tmVar: a text mining approach for extracting sequence variants in biomedical literature. Bioinformatics (2013) 1.87
NCBI disease corpus: a resource for disease name recognition and concept normalization. J Biomed Inform (2014) 1.83
Cross-species gene normalization by species inference. BMC Bioinformatics (2011) 1.73
SR4GN: a species recognition software tool for gene normalization. PLoS One (2012) 1.57
Overview of the gene ontology task at BioCreative IV. Database (Oxford) (2014) 1.46
Large-scale event extraction from literature with multi-level gene normalization. PLoS One (2013) 1.30
BioCreative-IV virtual issue. Database (Oxford) (2014) 1.23
A context-blocks model for identifying clinical relationships in patient records. BMC Bioinformatics (2011) 1.10
Semantic role labeling for protein transport predicates. BMC Bioinformatics (2008) 1.10
Systematic identification of pharmacogenomics information from clinical trials. J Biomed Inform (2012) 1.03
Improving perceived and actual text difficulty for health information consumers using semi-automated methods. AMIA Annu Symp Proc (2012) 1.01
Identifying non-elliptical entity mentions in a coordinated NP with ellipses. J Biomed Inform (2013) 0.86
SimConcept: A Hybrid Approach for Simplifying Composite Named Entities in Biomedicine. ACM BCB (2015) 0.81
Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time? J Biomed Semantics (2014) 0.78
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2009) 12.51
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2010) 10.97
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2011) 8.62
Overview of BioCreative II gene normalization. Genome Biol (2008) 5.05
Understanding PubMed user search behavior through log analysis. Database (Oxford) (2009) 3.27
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics (2011) 3.03
PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res (2013) 3.02
The gene normalization task in BioCreative III. BMC Bioinformatics (2011) 2.89
Inter-species normalization of gene mentions with GNAT. Bioinformatics (2008) 2.86
DNorm: disease name normalization with pairwise learning to rank. Bioinformatics (2013) 2.83
OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics (2008) 2.81
Recommending MeSH terms for annotating biomedical articles. J Am Med Inform Assoc (2011) 2.77
BioC: a minimalist approach to interoperability for biomedical text processing. Database (Oxford) (2013) 2.69
Overview of the BioCreative III Workshop. BMC Bioinformatics (2011) 2.31
BioCreative III interactive task: an overview. BMC Bioinformatics (2011) 2.16
Concept recognition for extracting protein interaction relations from biomedical text. Genome Biol (2008) 1.93
Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction. J Biomed Inform (2010) 1.91
Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies. Pac Symp Biocomput (2006) 1.90
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts. Database (Oxford) (2012) 1.89
tmVar: a text mining approach for extracting sequence variants in biomedical literature. Bioinformatics (2013) 1.87
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database (Oxford) (2013) 1.82
SR4GN: a species recognition software tool for gene normalization. PLoS One (2012) 1.57
Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Nucleic Acids Res (2004) 1.46
Efficient extraction of protein-protein interactions from full-text articles. IEEE/ACM Trans Comput Biol Bioinform (2010) 1.40
Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE. Database (Oxford) (2012) 1.32
Large-scale event extraction from literature with multi-level gene normalization. PLoS One (2013) 1.30
Extraction of data deposition statements from the literature: a method for automatically tracking research results. Bioinformatics (2011) 1.27
BioCreative-2012 virtual issue. Database (Oxford) (2012) 1.26
A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions. J Biomed Inform (2012) 1.22
A survey of current trends in computational drug repositioning. Brief Bioinform (2015) 1.18
Extracting Rx information from clinical narrative. J Am Med Inform Assoc (2010) 1.14
Mutations in POFUT1, encoding protein O-fucosyltransferase 1, cause generalized Dowling-Degos disease. Am J Hum Genet (2013) 1.13
Enhancing phylogeography by improving geographical information from GenBank. J Biomed Inform (2011) 1.11
Semantic role labeling for protein transport predicates. BMC Bioinformatics (2008) 1.10
A context-blocks model for identifying clinical relationships in patient records. BMC Bioinformatics (2011) 1.10
Click-words: learning to predict document keywords from a user perspective. Bioinformatics (2010) 1.09
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information. Database (Oxford) (2012) 1.05
Prevalent and rare mutations in IL-36RN gene in Chinese patients with generalized pustular psoriasis and psoriasis vulgaris. J Invest Dermatol (2013) 1.05
Pathway-based drug repositioning using causal inference. BMC Bioinformatics (2013) 1.04
Systematic identification of pharmacogenomics information from clinical trials. J Biomed Inform (2012) 1.03
Community challenges in biomedical text mining over 10 years: success, failure and the future. Brief Bioinform (2015) 1.00
Crowdsourcing in biomedicine: challenges and opportunities. Brief Bioinform (2015) 0.91
Deletion of the late cornified envelope genes LCE3C and LCE3B is associated with psoriasis in a Chinese population. J Invest Dermatol (2011) 0.89
Author keywords in biomedical journal articles. AMIA Annu Symp Proc (2010) 0.88
Nuclear entry of active caspase-3 is facilitated by its p3-recognition-based specific cleavage activity. Cell Res (2010) 0.86
Crowdsourcing and mining crowd data. Pac Symp Biocomput (2015) 0.79
Accessing biomedical literature in the current information landscape. Methods Mol Biol (2014) 0.79
Replication of association between interleukin-23 receptor (IL-23R) and its ligand (IL-12B) polymorphisms and psoriasis in the Chinese Han population. Hum Immunol (2010) 0.79
Automatic identification and normalization of dosage forms in drug monographs. BMC Med Inform Decis Mak (2012) 0.78
Finely tuning MOFs towards high-performance post-combustion CO2 capture materials. Chem Commun (Camb) (2015) 0.77
The protective effects of human umbilical cord mesenchymal stem cells on damaged ovarian function: A comparative study. Biosci Trends (2016) 0.77
A textual representation scheme for identifying clinical relationships in patient records. Proc Int Conf Mach Learn Appl (2011) 0.75
Formation of a metal-organic framework with high surface area and gas uptake by breaking edges off truncated cuboctahedral cages. Angew Chem Int Ed Engl (2013) 0.75
Optical image processing for synthetic-aperture imaging ladar based on two-dimensional Fourier transform. Appl Opt (2014) 0.75
Association of IL-12B gene rs6887695 polymorphism with hereditary susceptibility and clinical characterization of psoriasis vulgaris in the Chinese Han population. Arch Dermatol Res (2013) 0.75
[Comparison of human cord blood mesenchymal stem cell culture between using human umbilical cord plasma and using fetal bovine serum]. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi (2013) 0.75
Summarizing Documents by Measuring the Importance of a Subset of Vertices within a Graph. Proc IEEE WIC ACM Int Conf Web Intell Intell Agent Technol (2009) 0.75
Expanded porous MOF-505 analogue exhibiting large hydrogen storage capacity and selective carbon dioxide adsorption. Inorg Chem (2013) 0.75
New coherent laser communication detection scheme based on channel-switching method. Appl Opt (2015) 0.75
Indocyanine Green Derivative Covalently Conjugated with Gold Nanorods for Multimodal Phototherapy of Fibrosarcoma Cells. J Biomed Nanotechnol (2015) 0.75
Fine-tuning pore size by shifting coordination sites of ligands and surface polarization of metal-organic frameworks to sharply enhance the selectivity for CO2. J Am Chem Soc (2012) 0.75
Gene Name Disambiguation Using Multi-Scope Species Detection. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.75
[Analysis of risk factors for contact dermatitis in pig farm workers]. Zhonghua Lao Dong Wei Sheng Zhi Ye Bing Za Zhi (2014) 0.75