Human inversions and their functional consequences.

PubWeight™: 0.78‹?›

🔗 View Article (PMC 4576756)

Published in Brief Funct Genomics on May 20, 2015

Authors

Marta Puig, Sònia Casillas, Sergi Villatoro, Mario Cáceres

Articles cited by this

(truncated to the top 100)

Genetic Factors Affecting the Strength of Linkage in Drosophila. Proc Natl Acad Sci U S A (1917) 49.95

The diploid genome sequence of an Asian individual. Nature (2008) 46.29

The diploid genome sequence of an individual human. PLoS Biol (2007) 44.80

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer. Nature (2007) 37.09

Paired-end mapping reveals extensive structural variation in the human genome. Science (2007) 30.46

Mapping and sequencing of structural variation from eight human genomes. Nature (2008) 30.28

Fine-scale structural variation of the human genome. Nat Genet (2005) 24.31

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Res (2009) 15.15

A common inversion under selection in Europeans. Nat Genet (2005) 13.66

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature (2010) 12.27

A survey of genetic human cortical gene expression. Nat Genet (2007) 12.04

Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature (2012) 9.75

A copy number variation morbidity map of developmental delay. Nat Genet (2011) 9.58

A recurrent 15q13.3 microdeletion syndrome associated with mental retardation and seizures. Nat Genet (2008) 8.44

The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group. Genome Res (2009) 7.87

Genome assembly comparison identifies structural variants in the human genome. Nat Genet (2006) 6.93

A new chromosome 17q21.31 microdeletion syndrome associated with a common inversion polymorphism. Nat Genet (2006) 5.92

The genomic basis of adaptive evolution in threespine sticklebacks. Nature (2012) 5.20

Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library. Nat Biotechnol (2009) 5.13

A 1.5 million-base pair inversion polymorphism in families with Williams-Beuren syndrome. Nat Genet (2001) 4.58

The Database of Genomic Variants: a curated collection of structural variation in the human genome. Nucleic Acids Res (2013) 4.42

Structural variation of the human genome. Annu Rev Genomics Hum Genet (2006) 4.25

Association of an extended haplotype in the tau gene with progressive supranuclear palsy. Hum Mol Genet (1999) 4.17

Inversions disrupting the factor VIII gene are a common cause of severe haemophilia A. Nat Genet (1993) 4.12

Identification of a novel X-linked gene responsible for Emery-Dreifuss muscular dystrophy. Nat Genet (1994) 4.11

The origin of man: a chromosomal pictorial legacy. Science (1982) 4.02

Chromosome inversions, local adaptation and speciation. Genetics (2005) 3.96

The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans. Nat Genet (2009) 3.81

Mutational mechanisms of Williams-Beuren syndrome deletions. Am J Hum Genet (2003) 3.76

Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly. Nat Biotechnol (2012) 3.43

Evolutionary toggling of the MAPT 17q21.31 inversion region. Nat Genet (2008) 3.42

Emerin deletion reveals a common X-chromosome inversion mediated by inverted repeats. Nat Genet (1997) 3.30

A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Cell (2010) 3.22

Heterozygous submicroscopic inversions involving olfactory receptor-gene clusters mediate the recurrent t(4;8)(p16;p23) translocation. Am J Hum Genet (2002) 3.09

Position effect in human genetic disease. Hum Mol Genet (1998) 3.02

Haploinsufficiency of NSD1 causes Sotos syndrome. Nat Genet (2002) 2.96

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry. Nature (2011) 2.65

Recombination rate and reproductive success in humans. Nat Genet (2004) 2.52

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation? Annu Rev Ecol Evol Syst (2008) 2.50

High-resolution human genome structure by single-molecule analysis. Proc Natl Acad Sci U S A (2010) 2.47

Genomic inversions of human chromosome 15q11-q13 in mothers of Angelman syndrome patients with class II (BP2/3) deletions. Hum Mol Genet (2003) 2.25

A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation. PLoS Biol (2010) 2.21

Haplotypes and gene expression implicate the MAPT region for Parkinson disease: the GenePD Study. Neurology (2008) 2.16

A selective difference between human Y-chromosomal DNA haplotypes. Curr Biol (1999) 2.14

Linkage disequilibrium and association of MAPT H1 in Parkinson disease. Am J Hum Genet (2004) 2.10

Discovery of human inversion polymorphisms by comparative analysis of human and chimpanzee DNA sequence assemblies. PLoS Genet (2005) 2.05

Characterization of six human disease-associated inversion polymorphisms. Hum Mol Genet (2009) 2.00

The H1c haplotype at the MAPT locus is associated with Alzheimer's disease. Hum Mol Genet (2005) 1.94

Recurrent inversion breaking intron 1 of the factor VIII gene is a frequent cause of severe hemophilia A. Blood (2002) 1.89

Enhancer-adoption as a mechanism of human developmental disease. Hum Mutat (2011) 1.70

Structural diversity and African origin of the 17q21.31 inversion polymorphism. Nat Genet (2012) 1.62

An Inv(16)(p13.3q24.3)-encoded CBFA2T3-GLIS2 fusion protein defines an aggressive subtype of pediatric acute megakaryoblastic leukemia. Cancer Cell (2012) 1.61

Factor VIII gene inversions in severe hemophilia A: results of an international consortium study. Blood (1995) 1.59

How and why chromosome inversions evolve. PLoS Biol (2010) 1.57

Polymorphism and hemophilia A causing inversions in distal Xq28: a complex picture. J Thromb Haemost (2005) 1.52

Structural haplotypes and recent evolution of the human 17q21.31 region. Nat Genet (2012) 1.41

Chromosomal polymorphisms of 1, 9, 16, and Y in 4 major ethnic groups: a large prenatal study. Am J Med Genet (1987) 1.41

Variation in human recombination rates and its genetic determinants. PLoS One (2011) 1.39

The sequence and analysis of duplication-rich human chromosome 16. Nature (2004) 1.38

Inversion of the IDS gene resulting from recombination with IDS-related sequences is a common cause of the Hunter syndrome. Hum Mol Genet (1995) 1.37

Defensins and the dynamic genome: what we can learn from structural variation at human chromosome band 8p23.1. Genome Res (2008) 1.35

Assaying chromosomal inversions by single-molecule haplotyping. Nat Methods (2006) 1.34

The distribution and most recent common ancestor of the 17q21 inversion in humans. Am J Hum Genet (2010) 1.31

Evidence for large inversion polymorphisms in the human genome from HapMap data. Genome Res (2006) 1.29

Untangling the tau gene association with neurodegenerative disorders. Hum Mol Genet (2006) 1.27

Identification of a 3.0-kb major recombination hotspot in patients with Sotos syndrome who carry a common 1.9-Mb microdeletion. Am J Hum Genet (2004) 1.27

Dementia risk in Parkinson disease: disentangling the role of MAPT haplotypes. Arch Neurol (2011) 1.23

Inversion of the Williams syndrome region is a common polymorphism found more frequently in parents of children with Williams syndrome. Am J Med Genet C Semin Med Genet (2010) 1.22

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation. Genes Dev (2014) 1.20

The origin, global distribution, and functional impact of the human 8p23 inversion polymorphism. Genome Res (2012) 1.14

Genotyping the hemophilia inversion hotspot by use of inverse PCR. Clin Chem (2005) 1.12

Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability. Nat Genet (2014) 1.09

Supergenes and their role in evolution. Heredity (Edinb) (2014) 1.04

InvFEST, a database integrating information of polymorphic inversions in the human genome. Nucleic Acids Res (2013) 1.03

High-resolution mapping of heterochromatin redistribution in a Drosophila position-effect variegation model. Epigenetics Chromatin (2009) 1.03

Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees. Trends Genet (2004) 1.03

Role of the tau gene region chromosome inversion in progressive supranuclear palsy, corticobasal degeneration, and related disorders. Arch Neurol (2008) 1.01

Inversion variants in the human genome: role in disease and genome architecture. Genome Med (2010) 1.01

Inversion of exons 1-7 of the MSH2 gene is a frequent cause of unexplained Lynch syndrome in one local population. Fam Cancer (2014) 1.00

Challenges in studying genomic structural variant formation mechanisms: the short-read dilemma and beyond. Bioessays (2011) 1.00

Identification of polymorphic inversions from genotypes. BMC Bioinformatics (2012) 0.99

A common 16p11.2 inversion underlies the joint susceptibility to asthma and obesity. Am J Hum Genet (2014) 0.97

Identification and frequency estimation of inversion polymorphisms from haplotype data. J Comput Biol (2010) 0.97

Deletion of an enhancer near DLX5 and DLX6 in a family with hearing loss, craniofacial defects, and an inv(7)(q21.3q35). Hum Genet (2010) 0.95

Investigation of inversion polymorphisms in the human genome using principal components analysis. PLoS One (2012) 0.95

Mechanisms of formation of structural variation in a fully sequenced human genome. Hum Mutat (2012) 0.95

Recurrent inversion events at 17q21.31 microdeletion locus are linked to the MAPT H2 haplotype. Cytogenet Genome Res (2010) 0.93

Nucleotide, cytogenetic and expression impact of the human chromosome 8p23.1 inversion polymorphism. PLoS One (2009) 0.92

On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees. Genome Biol (2007) 0.92

Detection of chromosomal breakpoints in patients with developmental delay and speech disorders. PLoS One (2014) 0.92

Common inversion polymorphism at 17q21.31 affects expression of multiple genes in tissue-specific manner. BMC Genomics (2012) 0.91

Long-range, high-throughput haplotype determination via haplotype-fusion PCR and ligation haplotyping. Nucleic Acids Res (2008) 0.90

Low-copy repeats at the human VIPR2 gene predispose to recurrent and nonrecurrent rearrangements. Eur J Hum Genet (2012) 0.88

Following the footprints of polymorphic inversions on SNP data: from detection to association tests. Nucleic Acids Res (2015) 0.87

No significantly increased frequency of the inversion polymorphism at the WBS-critical region 7q11.23 in German parents of patients with Williams-Beuren syndrome as compared to a population control. Mol Cytogenet (2010) 0.86

The effect of inversion at 8p23 on BLK association with lupus in Caucasian population. PLoS One (2014) 0.86

X-linked deafness-2 (DFNX2) phenotype associated with a paracentric inversion upstream of POU3F4. Am J Audiol (2014) 0.85

On the structural plasticity of the human genome: chromosomal inversions revisited. Curr Genomics (2012) 0.82

Investigation of the origins of human autosomal inversions. Hum Genet (2008) 0.82

On the power and the systematic biases of the detection of chromosomal inversions by paired-end genome sequencing. PLoS One (2013) 0.81

Articles by these authors

Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01

The Drosophila melanogaster Genetic Reference Panel. Nature (2012) 7.94

Human brain evolution: insights from microarrays. Nat Rev Genet (2004) 2.42

Global analysis of alternative splicing differences between humans and chimpanzees. Genes Dev (2007) 2.00

Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories. Evolution (2005) 1.93

miR-34a contributes to megakaryocytic differentiation of K562 cells independently of p53. Blood (2009) 1.54

The foldback-like transposon Galileo is involved in the generation of two different natural chromosomal inversions of Drosophila buzzatii. Mol Biol Evol (2003) 1.36

Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites. Nucleic Acids Res (2008) 1.34

The chromosomal polymorphism linked to variation in social behavior in the white-throated sparrow (Zonotrichia albicollis) is a complex rearrangement and suppressor of recombination. Genetics (2008) 1.32

Silencing of a gene adjacent to the breakpoint of a widespread Drosophila inversion by a transposon-induced antisense RNA. Proc Natl Acad Sci U S A (2004) 1.12

InvFEST, a database integrating information of polymorphic inversions in the human genome. Nucleic Acids Res (2013) 1.03

Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees. Trends Genet (2004) 1.03

Identification of polymorphic inversions from genotypes. BMC Bioinformatics (2012) 0.99

The transposon Galileo generates natural chromosomal inversions in Drosophila by ectopic recombination. PLoS One (2009) 0.99

Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex. Genome Res (2005) 0.98

Probe-specific mixed-model approach to detect copy number differences using multiplex ligation-dependent probe amplification (MLPA). BMC Bioinformatics (2008) 0.97

Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex. Genetics (2005) 0.94

Brain response to traumatic brain injury in wild-type and interleukin-6 knockout mice: a microarray analysis. J Neurochem (2005) 0.93

Novel UBE3A mutations causing Angelman syndrome: different parental origin for single nucleotide changes and multiple nucleotide deletions or insertions. Am J Med Genet A (2009) 0.93

Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. Hum Mol Genet (2007) 0.92

Identification of copy number variants defining genomic differences among major human groups. PLoS One (2009) 0.89

Imprinting center analysis in Prader-Willi and Angelman syndrome patients with typical and atypical phenotypes. Eur J Med Genet (2006) 0.89

The Foldback-like element Galileo belongs to the P superfamily of DNA transposons and is widespread within the Drosophila genus. Proc Natl Acad Sci U S A (2008) 0.89

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild. BMC Genomics (2013) 0.87

A new split of the Hox gene complex in Drosophila: relocation and evolution of the gene labial. Mol Biol Evol (2003) 0.85

PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data. PLoS One (2013) 0.85

Integrin-specific mechanoresponses to compression and extension probed by cylindrical flat-ended AFM tips in lung cells. PLoS One (2012) 0.83

MamPol: a database of nucleotide polymorphism in the Mammalia class. Nucleic Acids Res (2006) 0.83

PopDrowser: the Population Drosophila Browser. Bioinformatics (2011) 0.83

ProSeeK: a web server for MLPA probe design. BMC Genomics (2008) 0.83

MLPAstats: an R GUI package for the integrated analysis of copy number alterations using MLPA data. BMC Bioinformatics (2011) 0.81

Striking structural dynamism and nucleotide sequence variation of the transposon Galileo in the genome of Drosophila mojavensis. Mob DNA (2013) 0.81

On the power and the systematic biases of the detection of chromosomal inversions by paired-end genome sequencing. PLoS One (2013) 0.81

Detecting genetic variation in microarray expression data. Genome Res (2007) 0.80

Variants in SNAP25 are targets of natural selection and influence verbal performances in women. Cell Mol Life Sci (2011) 0.80

Novel roles for metallothionein-I + II (MT-I + II) in defense responses, neurogenesis, and tissue restoration after traumatic brain injury: insights from global gene expression profiling in wild-type and MT-I + II knockout mice. J Neurosci Res (2006) 0.78

Protein polymorphism is negatively correlated with conservation of intronic sequences and complexity of expression patterns in Drosophila melanogaster. J Mol Evol (2007) 0.78

Long-standing balancing selection in the THBS4 gene: influence on sex-specific brain expression and gray matter volumes in Alzheimer disease. Hum Mutat (2013) 0.77

Localization of parathyroid adenomas by (99m)Tc-sestamibi scanning: upper neck versus lower neck lesions. Endocr Pract (2005) 0.77

Population genetic analysis of bi-allelic structural variants from low-coverage sequence data with an expectation-maximization algorithm. BMC Bioinformatics (2014) 0.76

A common 56-kilobase deletion in a primate-specific segmental duplication creates a novel butyrophilin-like protein. BMC Genet (2013) 0.76

Worldwide population distribution of the common LCE3C-LCE3B deletion associated with psoriasis and other autoimmune disorders. BMC Genomics (2013) 0.75

Spanish version of the Link's Perceived Devaluation and Discrimination scale. Psicothema (2016) 0.75

[Prader Willi syndrome patients: study of 77 patients]. Med Clin (Barc) (2009) 0.75