Published in Proteins on August 14, 2015
New encouraging developments in contact prediction: Assessment of the CASP11 results. Proteins (2015) 0.87
UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling. Bioinformatics (2016) 0.82
Applications of contact predictions to structural biology. IUCrJ (2017) 0.75
Predictions of Backbone Dynamics in Intrinsically Disordered Proteins Using De Novo Fragment-Based Protein Structure Predictions. Sci Rep (2017) 0.75
An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences. Acta Crystallogr D Struct Biol (2017) 0.75
HMMER web server: interactive sequence similarity searching. Nucleic Acids Res (2011) 13.00
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods (2011) 6.06
Protein 3D structure computed from evolutionary sequence variation. PLoS One (2011) 4.71
Transmembrane protein topology prediction using support vector machines. BMC Bioinformatics (2009) 4.67
Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci U S A (2008) 4.37
Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proc Natl Acad Sci U S A (2011) 4.08
PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments. Bioinformatics (2011) 3.89
Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction. Bioinformatics (2007) 3.42
Predicting novel protein folds by using FRAGFOLD. Proteins (2001) 2.65
Protein structure prediction from sequence variation. Nat Biotechnol (2012) 2.50
Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era. Proc Natl Acad Sci U S A (2013) 2.43
Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 2.31
Improved residue contact prediction using support vector machines and a large feature set. BMC Bioinformatics (2007) 2.03
Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis. Proc Natl Acad Sci U S A (2012) 2.02
Prediction of novel and analogous folds using fragment assembly and fold recognition. Proteins (2005) 1.84
MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins. Bioinformatics (2014) 1.26
FreeContact: fast and free software for protein contact prediction from residue co-evolution. BMC Bioinformatics (2014) 1.20
Prediction of contacts from correlated sequence substitutions. Curr Opin Struct Biol (2013) 1.16
Improved contact predictions using the recognition of protein like contact patterns. PLoS Comput Biol (2014) 1.16
Coevolutionary signals across protein lineages help capture multiple protein conformations. Proc Natl Acad Sci U S A (2013) 1.14
CCMpred--fast and precise prediction of protein residue-residue contacts from correlated mutations. Bioinformatics (2014) 1.12
Successful ab initio prediction of the tertiary structure of NK-lysin using multiple sequences and recognized supersecondary structural motifs. Proteins (1997) 1.11
De novo structure prediction of globular proteins aided by sequence variation-derived contacts. PLoS One (2014) 1.10
Evaluation of residue-residue contact prediction in CASP10. Proteins (2013) 1.10
One contact for every twelve residues allows robust and accurate topology-level protein structure modeling. Proteins (2013) 0.97