Published in Nucleic Acids Res on December 03, 2015
cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs. Clin Epigenetics (2016) 0.85
Exploring ncRNAs in Alzheimer's disease by miRMaster. Oncotarget (2016) 0.75
QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing. BMC Bioinformatics (2017) 0.75
Toward the human cellular microRNAome. Genome Res (2017) 0.75
Bias in recent miRBase annotations potentially associated with RNA quality issues. Sci Rep (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell (1993) 64.62
Identification of novel genes coding for small expressed RNAs. Science (2001) 44.44
The Ensembl genome database project. Nucleic Acids Res (2002) 40.87
miRBase: tools for microRNA genomics. Nucleic Acids Res (2007) 38.61
Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol (2009) 19.99
The microRNAs of Caenorhabditis elegans. Genes Dev (2003) 17.70
NCBI GEO: archive for functional genomics data sets--10 years on. Nucleic Acids Res (2010) 14.38
Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol (2008) 10.17
Computational identification of Drosophila microRNA genes. Genome Biol (2003) 9.86
The Vienna RNA websuite. Nucleic Acids Res (2008) 9.02
The expanding snoRNA world. Biochimie (2002) 6.10
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res (2011) 5.83
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res (2009) 2.90
NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Res (2011) 2.82
Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs. Proc Natl Acad Sci U S A (2015) 2.72
Current tools for the identification of miRNA genes and their targets. Nucleic Acids Res (2009) 2.12
A blood based 12-miRNA signature of Alzheimer disease patients. Genome Biol (2013) 1.99
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinformatics (2010) 1.53
Comprehensive analysis of microRNA profiles in multiple sclerosis including next-generation sequencing. Mult Scler (2013) 1.16
Comparative microRNA profiling of prostate carcinomas with increasing tumor stage by deep sequencing. Mol Cancer Res (2013) 1.02
Influence of the confounding factors age and sex on microRNA profiles from peripheral blood. Clin Chem (2014) 0.99
High-throughput qRT-PCR validation of blood microRNAs in non-small cell lung cancer. Oncotarget (2016) 0.85
BALL-SNP: combining genetic and structural information to identify candidate non-synonymous single nucleotide polymorphisms. Genome Med (2015) 0.82
Circulating serum miRNAs as potential biomarkers for nephroblastoma. Pediatr Blood Cancer (2015) 0.81
Differential blood-based diagnosis between benign prostatic hyperplasia and prostate cancer: miRNA as source for biomarkers independent of PSA level, Gleason score, or TNM status. Tumour Biol (2016) 0.81
Longitudinal study on circulating miRNAs in patients after lung cancer resection. Oncotarget (2015) 0.79
Integrated quantitative proteomic and transcriptomic analysis of lung tumor and control tissue: a lung cancer showcase. Oncotarget (2016) 0.79
Deep characterization of blood cell miRNomes by NGS. Cell Mol Life Sci (2016) 0.77
Technical Stability and Biological Variability in MicroRNAs from Dried Blood Spots: A Lung Cancer Therapy-Monitoring Showcase. Clin Chem (2017) 0.75
Bias in recent miRBase annotations potentially associated with RNA quality issues. Sci Rep (2017) 0.75
The miRNome of Alzheimer's disease: consistent downregulation of the miR-132/212 cluster. Neurobiol Aging (2016) 0.75
Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs. Nucleic Acids Res (2017) 0.75