Genome scaffolding and annotation for the pathogen vector Ixodes ricinus by ultra-long single molecule sequencing.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 28179027)

Published in Parasit Vectors on February 08, 2017

Authors

Wibke J Cramaro1, Oliver E Hunewald1, Lesley Bell-Sakyi2, Claude P Muller3

Author Affiliations

1: Luxembourg Institute of Health, Esch-sur-Alzette, Luxembourg.
2: The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU240NF, UK.
3: Luxembourg Institute of Health, Esch-sur-Alzette, Luxembourg. claude.muller@lih.lu.

Articles citing this

Gene Duplication and Protein Evolution in Tick-Host Interactions. Front Cell Infect Microbiol (2017) 0.75

Articles cited by this

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics (2012) 6.16

Lyme borreliosis. Lancet (2011) 4.81

Nuclear DNA content and genome size of trout and human. Cytometry A (2003) 4.43

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology. PLoS One (2012) 4.18

Structural classification of zinc fingers: survey and summary. Nucleic Acids Res (2003) 3.94

Next generation sequence assembly with AMOS. Curr Protoc Bioinformatics (2011) 3.60

Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb. Ann Bot (2003) 3.39

Effects of climate change on ticks and tick-borne diseases in europe. Interdiscip Perspect Infect Dis (2009) 2.48

Driving forces for changes in geographical distribution of Ixodes ricinus ticks in Europe. Parasit Vectors (2013) 2.12

Longitudinal analysis of tick densities and Borrelia, Anaplasma, and Ehrlichia infections of Ixodes ricinus ticks in different habitat areas in The Netherlands. Appl Environ Microbiol (2006) 1.73

Epidemiology of lyme borreliosis. Curr Probl Dermatol (2009) 1.67

Changes in the geographical distribution and abundance of the tick Ixodes ricinus during the past 30 years in Sweden. Parasit Vectors (2012) 1.64

Evaluation of glucocorticoid-induced DNA fragmentation in mouse thymocytes by flow cytometry. Cell Prolif (1991) 1.60

Tick cell lines: tools for tick and tick-borne disease research. Trends Parasitol (2007) 1.48

Multi-source analysis reveals latitudinal and altitudinal shifts in range of Ixodes ricinus at its northern distribution limit. Parasit Vectors (2011) 1.31

In vivo characterization and therapeutic efficacy of a C5-specific inhibitor from the soft tick Ornithodoros moubata. J Biol Chem (2007) 1.22

Occurrence of Babesia spp., Rickettsia spp. and Bartonella spp. in Ixodes ricinus in Bavarian public parks, Germany. Parasit Vectors (2011) 1.19

Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nat Commun (2016) 1.18

Prevalence and seasonality of tick-borne pathogens in questing Ixodes ricinus ticks from Luxembourg. Appl Environ Microbiol (2010) 1.17

The ecology of ticks and epidemiology of tick-borne viral diseases. Antiviral Res (2014) 1.12

Tick-borne disease systems emerge from the shadows: the beauty lies in molecular detail, the message in epidemiology. Parasitology (2009) 1.10

Genome size and organization in the blacklegged tick, Ixodes scapularis and the Southern cattle tick, Boophilus microplus. Insect Mol Biol (2005) 1.07

Variation in genome size of argasid and ixodid ticks. Insect Biochem Mol Biol (2007) 1.07

Tick anti-hemostatics: targets for future vaccines and therapeutics. Trends Parasitol (2007) 1.02

Borrelia burgdorferi infection prevalences in questing Ixodes ricinus ticks (Acari: Ixodidae) in urban and suburban Bonn, western Germany. Parasitol Res (2004) 0.97

DNA copy number evolution in Drosophila cell lines. Genome Biol (2014) 0.97

Ixodes scapularis and Ixodes ricinus tick cell lines respond to infection with tick-borne encephalitis virus: transcriptomic and proteomic analysis. Parasit Vectors (2015) 0.92

Ixodes ricinus abundance and its infection with the tick-borne pathogens in urban and suburban areas of Eastern Slovakia. Parasit Vectors (2013) 0.91

Vertical distribution of the tick Ixodes ricinus and tick-borne pathogens in the northern Moravian mountains correlated with climate warming (Jeseníky Mts., Czech Republic). Cent Eur J Public Health (2009) 0.87

Genome organization of major tandem repeats in the hard tick, Ixodes scapularis. Chromosome Res (2010) 0.85

[Climate changes and emerging diseases. What new infectious diseases and health problem can be expected?]. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz (2009) 0.81

Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naïve midgut. BMC Genomics (2015) 0.81

Activity of the tick Ixodes ricinus monitored in a suburban park in Brno, Czech Republic, in association with the evaluation of selected repellents. J Vector Ecol (2013) 0.77

The relevance of forest fragmentation on the incidence of human babesiosis: investigating the landscape epidemiology of an emerging tick-borne disease. Vector Borne Zoonotic Dis (2013) 0.77