Published in Front Microbiol on March 17, 2017
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol (1980) 113.75
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol (2013) 112.81
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol (2006) 57.72
KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res (2011) 30.20
Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
Evolution of mammals and their gut microbes. Science (2008) 21.40
Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol (2008) 12.16
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol (2013) 11.05
'Metabonomics': understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data. Xenobiotica (1999) 9.04
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science (2011) 8.88
Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci U S A (2008) 6.42
Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc (2006) 6.33
Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat Rev Microbiol (2008) 6.33
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci U S A (2010) 6.10
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites. Proc Natl Acad Sci U S A (2009) 5.86
Technical advance: simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant J (2000) 4.64
Opinion: understanding 'global' systems biology: metabonomics and the continuum of metabolism. Nat Rev Drug Discov (2003) 4.46
Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol (2010) 4.01
Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis. Cell (2014) 3.33
Probiotic bacteria as biological control agents in aquaculture. Microbiol Mol Biol Rev (2000) 3.27
Evidence for a core gut microbiota in the zebrafish. ISME J (2011) 3.22
Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer. PLoS One (2012) 2.77
Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation. Microbiol Immunol (2002) 2.66
Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model. Mol Syst Biol (2008) 2.43
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis. Mol Ecol (2012) 2.01
The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation. Nat Genet (2015) 1.90
Volatile organic compounds from feces and their potential for diagnosis of gastrointestinal disease. FASEB J (2007) 1.77
Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm. Proc Natl Acad Sci U S A (2010) 1.59
Interactions of gut microbiota with functional food components and nutraceuticals. Pharmacol Res (2009) 1.43
Composition, diversity, and origin of the bacterial community in grass carp intestine. PLoS One (2012) 1.43
Nutritional metabonomics: applications and perspectives. J Proteome Res (2007) 1.42
Rapid changes in the gut microbiome during human evolution. Proc Natl Acad Sci U S A (2014) 1.23
Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes. Mol Ecol (2014) 1.18
Impact of a synbiotic food on the gut microbial ecology and metabolic profiles. BMC Microbiol (2010) 1.10
Analysis of stomach and gut microbiomes of the eastern oyster (Crassostrea virginica) from coastal Louisiana, USA. PLoS One (2012) 1.10
Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish. ISME J (2013) 1.06
Diet and environment shape fecal bacterial microbiota composition and enteric pathogen load of grizzly bears. PLoS One (2011) 1.02
Complementary symbiont contributions to plant decomposition in a fungus-farming termite. Proc Natl Acad Sci U S A (2014) 1.00
Antimicrobial and immune modulatory effects of lactic acid and short chain fatty acids produced by vaginal microbiota associated with eubiosis and bacterial vaginosis. Front Physiol (2015) 1.00
The role of microbial amino acid metabolism in host metabolism. Nutrients (2015) 0.99
Dietary protein concentration affects intestinal microbiota of adult cats: a study using DGGE and qPCR to evaluate differences in microbial populations in the feline gastrointestinal tract. J Anim Physiol Anim Nutr (Berl) (2009) 0.99
Host species as a strong determinant of the intestinal microbiota of fish larvae. J Microbiol (2012) 0.91
Gut microbiota contributes to the growth of fast-growing transgenic common carp (Cyprinus carpio L.). PLoS One (2013) 0.90
Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity. Mol Ecol (2014) 0.90
Comparative analysis of the intestinal bacterial communities in different species of carp by pyrosequencing. Microb Ecol (2014) 0.90
Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota. ISME J (2015) 0.89
Proteocatella sphenisci gen. nov., sp. nov., a psychrotolerant, spore-forming anaerobe isolated from penguin guano. Int J Syst Evol Microbiol (2009) 0.88
Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits. J Appl Microbiol (2014) 0.88
Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion. Nature (2016) 0.87
Newly cultured bacteria with broad diversity isolated from eight-week continuous culture enrichments of cow feces on complex polysaccharides. Appl Environ Microbiol (2013) 0.86
Intestinal microbial communities associated with acute enteric infections and disease recovery. Microbiome (2015) 0.85
Phylogenomic analysis resolves the formerly intractable adaptive diversification of the endemic clade of east Asian Cyprinidae (Cypriniformes). PLoS One (2010) 0.83
Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health. Front Microbiol (2016) 0.83
Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the partial S6K1 gene sequences and implication of indel sites in intron 1. Sci China C Life Sci (2007) 0.82
Combination of ¹H NMR- and GC-MS-based metabonomics to study on the toxicity of Coptidis Rhizome in rats. PLoS One (2014) 0.81
Factors influencing the grass carp gut microbiome and its effect on metabolism. FEMS Microbiol Ecol (2013) 0.81
Integration of datasets from different analytical techniques to assess the impact of nutrition on human metabolome. Front Cell Infect Microbiol (2012) 0.81
Changes in the gut microbiome of the sea lamprey during metamorphosis. Appl Environ Microbiol (2012) 0.78
An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection. PLoS One (2016) 0.77
Metatranscriptomic discovery of plant biomass-degrading capacity from grass carp intestinal microbiomes. FEMS Microbiol Ecol (2015) 0.77
Diet Diversity Is Associated with Beta but not Alpha Diversity of Pika Gut Microbiota. Front Microbiol (2016) 0.76
Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis. Sci Rep (2016) 0.76
[Effect of water velocity on swimming behavior of juvenile Megalobrama amblycephala]. Dongwuxue Yanjiu (2013) 0.76