Published in PLoS One on July 12, 2017
The Sequence Alignment/Map format and SAMtools. Bioinformatics (2009) 232.39
Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94
Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods (2008) 126.81
Circos: an information aesthetic for comparative genomics. Genome Res (2009) 40.02
Application of phylogenetic networks in evolutionary studies. Mol Biol Evol (2005) 31.72
The evolutionary fate and consequences of duplicate genes. Science (2000) 24.22
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science (2006) 21.03
Detecting protein function and protein-protein interactions from genome sequences. Science (1999) 18.69
Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature (1988) 15.05
TM4 microarray software suite. Methods Enzymol (2006) 13.78
Segmental duplications and copy-number variation in the human genome. Am J Hum Genet (2005) 13.33
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res (2006) 8.36
Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary. Syst Biol (2005) 5.95
The galvanization of biology: a growing appreciation for the roles of zinc. Science (1996) 5.67
Evidence that tristetraprolin binds to AU-rich elements and promotes the deadenylation and destabilization of tumor necrosis factor alpha mRNA. Mol Cell Biol (1999) 5.55
Synteny and collinearity in plant genomes. Science (2008) 5.26
Cell cycle control of the yeast HO gene: cis- and trans-acting regulators. Cell (1987) 5.12
Tristetraprolin and other CCCH tandem zinc-finger proteins in the regulation of mRNA turnover. Biochem Soc Trans (2002) 4.02
RNA recognition motifs: boring? Not quite. Curr Opin Struct Biol (2008) 3.78
Inhibition of retroviral RNA production by ZAP, a CCCH-type zinc finger protein. Science (2002) 3.73
Estimating genome conservation between crop and model legume species. Proc Natl Acad Sci U S A (2004) 3.55
Interactions of CCCH zinc finger proteins with mRNA. Binding of tristetraprolin-related zinc finger proteins to Au-rich elements and destabilization of mRNA. J Biol Chem (2000) 3.50
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol (2013) 3.41
Multiple modes of RNA recognition by zinc finger proteins. Curr Opin Struct Biol (2005) 2.67
The evolutionary dynamics of plant duplicate genes. Curr Opin Plant Biol (2005) 2.63
Molecular recognition of histone H3 by the WD40 protein WDR5. Nat Struct Mol Biol (2006) 2.55
Structure and function of KH domains. FEBS J (2008) 2.48
Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol (2011) 2.36
Regulation and function of the Arabidopsis ABA-insensitive4 gene in seed and abscisic acid response signaling networks. Plant Physiol (2000) 2.21
A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.). Plant J (2013) 1.87
Combined networks regulating seed maturation. Trends Plant Sci (2007) 1.79
Zinc-finger transcription factors in plants. Cell Mol Life Sci (1998) 1.74
The WD-repeat protein superfamily in Arabidopsis: conservation and divergence in structure and function. BMC Genomics (2003) 1.73
Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product. Plant J (2000) 1.56
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. BMC Genomics (2008) 1.55
HUA1, a regulator of stamen and carpel identities in Arabidopsis, codes for a nuclear RNA binding protein. Plant Cell (2001) 1.54
SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5. Plant Cell (2008) 1.52
Rapid evolution of goat and sheep globin genes following gene duplication. Mol Biol Evol (1983) 1.52
A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice. Plant Physiol (2006) 1.52
Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana. Dev Cell (2003) 1.47
Adaptation of protein surfaces to subcellular location. J Mol Biol (1998) 1.43
PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell (1998) 1.42
Directed evolution of proteins by exon shuffling. Nat Biotechnol (2001) 1.41
Cleavage of RNA hairpins mediated by a developmentally regulated CCCH zinc finger protein. Mol Cell Biol (1996) 1.38
Selection and gene duplication: a view from the genome. Genome Biol (2002) 1.34
OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling. PLoS One (2008) 1.32
The Arabidopsis tandem zinc finger protein AtTZF1 traffics between the nucleus and cytoplasmic foci and binds both DNA and RNA. Plant Physiol (2009) 1.27
The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis. Plant Cell Physiol (2007) 1.27
Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Mol Biol Evol (2003) 1.24
GhZFP1, a novel CCCH-type zinc finger protein from cotton, enhances salt stress tolerance and fungal disease resistance in transgenic tobacco by interacting with GZIRD21A and GZIPR5. New Phytol (2009) 1.23
Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression. Brief Funct Genomics (2010) 1.14
The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes. Mol Biol Evol (2007) 1.07
The Arabidopsis tandem zinc finger protein AtTZF1 affects ABA- and GA-mediated growth, stress and gene expression responses. Plant J (2010) 1.04
A conserved CCCH-type zinc finger protein regulates mRNA nuclear adenylation and export. J Cell Biol (2009) 1.03
CCCH-type zinc finger family in maize: genome-wide identification, classification and expression profiling under abscisic acid and drought treatments. PLoS One (2012) 0.99
Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula. Plant Cell Rep (2013) 0.97
The Arabidopsis tandem CCCH zinc finger proteins AtTZF4, 5 and 6 are involved in light-, abscisic acid- and gibberellic acid-mediated regulation of seed germination. Plant Cell Environ (2013) 0.97
Comparison of theoretical proteomes: identification of COGs with conserved and variable pI within the multimodal pI distribution. BMC Genomics (2005) 0.89
Global transcriptome analysis of developing chickpea (Cicer arietinum L.) seeds. Front Plant Sci (2014) 0.87
Genetic maps and the use of synteny. Methods Mol Biol (2009) 0.87
Tandem CCCH zinc finger proteins in plant growth, development and stress response. Plant Cell Physiol (2014) 0.87
Yeast one-hybrid screening for DNA-protein interactions. Curr Protoc Mol Biol (2001) 0.86
Interaction of PvALF and VP1 B3 domains with the beta -phaseolin promoter. Plant Mol Biol (2004) 0.84
Comprehensive analysis of CCCH-type zinc finger gene family in citrus (Clementine mandarin) by genome-wide characterization. Mol Genet Genomics (2014) 0.78
Isolation of microsatellites from Catharanthus roseus (L.) G. Don using enriched libraries. Methods Mol Biol (2009) 0.75