Published in Biochemistry on June 03, 1986
Improved free-energy parameters for predictions of RNA duplex stability. Proc Natl Acad Sci U S A (1986) 19.52
Improved predictions of secondary structures for RNA. Proc Natl Acad Sci U S A (1989) 11.52
Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa. J Bacteriol (2008) 3.32
Predicting oligonucleotide affinity to nucleic acid targets. RNA (1999) 2.67
Comparative analysis detects dependencies among the 5' splice-site positions. RNA (2004) 1.91
Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena. Proc Natl Acad Sci U S A (1990) 1.88
RNA hairpin loop stability depends on closing base pair. Nucleic Acids Res (1993) 1.40
Computational approaches for RNA energy parameter estimation. RNA (2010) 1.33
N 2-methylguanosine is iso-energetic with guanosine in RNA duplexes and GNRA tetraloops. Nucleic Acids Res (1998) 1.08
Testing the nearest neighbor model for canonical RNA base pairs: revision of GU parameters. Biochemistry (2012) 1.00
Thermodynamic analysis of 5' and 3' single- and 3' double-nucleotide overhangs neighboring wobble terminal base pairs. Nucleic Acids Res (2008) 1.00
Thermodynamic characterization of naturally occurring RNA tetraloops. RNA (2010) 1.00
Temperature dependent chemical and enzymatic probing of the tRNA-like structure of TYMV RNA. Nucleic Acids Res (1988) 0.98
Template-directed primer extension catalyzed by the Tetrahymena ribozyme. Mol Cell Biol (1991) 0.96
Thermodynamic and kinetic analysis of an RNA kissing interaction and its resolution into an extended duplex. Biophys J (2012) 0.88
Novel RNA base pair with higher specificity using single selenium atom. Nucleic Acids Res (2012) 0.88
Genetic and comparative analyses reveal an alternative secondary structure in the region of nt 912 of Escherichia coli 16S rRNA. Proc Natl Acad Sci U S A (1995) 0.86
Structure-function analysis from the outside in: long-range tertiary contacts in RNA exhibit distinct catalytic roles. Biochemistry (2011) 0.86
Microarrays for identifying binding sites and probing structure of RNAs. Nucleic Acids Res (2014) 0.83
Helix capping in RNA structure. PLoS One (2014) 0.79
Bridging the gap between in vitro and in vivo RNA folding. Q Rev Biophys (2016) 0.78
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol (1999) 41.48
Improved free-energy parameters for predictions of RNA duplex stability. Proc Natl Acad Sci U S A (1986) 19.52
Improved predictions of secondary structures for RNA. Proc Natl Acad Sci U S A (1989) 11.52
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry (1998) 9.75
PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules. Nature (1993) 8.83
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proc Natl Acad Sci U S A (1994) 8.06
Predicting optimal and suboptimal secondary structure for RNA. Methods Enzymol (1990) 7.08
Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp. Biochemistry (1983) 6.81
RNA structure prediction. Annu Rev Biophys Biophys Chem (1988) 5.75
Resolving the functions of overlapping viral genes by site-specific mutagenesis at a mRNA splice site. Nature (1982) 5.61
Inhibition of RNA cleavage but not polyadenylation by a point mutation in mRNA 3' consensus sequence AAUAAA. Nature (1983) 5.18
Gene synthesis machines: DNA chemistry and its uses. Science (1985) 4.76
In situ activation of bis-dialkylaminophosphines--a new method for synthesizing deoxyoligonucleotides on polymer supports. Nucleic Acids Res (1984) 4.55
Evaluation of 2'-modified oligonucleotides containing 2'-deoxy gaps as antisense inhibitors of gene expression. J Biol Chem (1993) 3.70
The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction. Eur J Biochem (1982) 3.51
Predicting thermodynamic properties of RNA. Methods Enzymol (1995) 3.38
Thermodynamics of (dG--dC)3 double-helix formation in water and deuterium oxide. Biochemistry (1981) 3.30
Polymer-supported RNA synthesis and its application to test the nearest-neighbor model for duplex stability. Biochemistry (1986) 3.21
Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing. Biochemistry (1996) 2.96
Binding of synthetic lactose operator DNAs to lactose represessors. Proc Natl Acad Sci U S A (1977) 2.86
Thermodynamic studies of RNA stability. J Biomol Struct Dyn (1984) 2.75
Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes. Biochemistry (1985) 2.70
Predicting oligonucleotide affinity to nucleic acid targets. RNA (1999) 2.67
Antisense oligonucleotides inhibit intercellular adhesion molecule 1 expression by two distinct mechanisms. J Biol Chem (1991) 2.65
Metal ion catalysis in the Tetrahymena ribozyme reaction. Nature (1993) 2.62
Total synthesis of the gene for an alanine transfer ribonucleic acid from yeast. Nature (1970) 2.51
A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison. Nucleic Acids Res (1991) 2.51
Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs. Biochemistry (1991) 2.44
Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin. Science (1992) 2.44
Thermodynamics of single mismatches in RNA duplexes. Biochemistry (1999) 2.36
Uniformly modified 2'-deoxy-2'-fluoro phosphorothioate oligonucleotides as nuclease-resistant antisense compounds with high affinity and specificity for RNA targets. J Med Chem (1993) 2.34
Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids. Biochemistry (1986) 2.32
New chemical methods for synthesizing polynucleotides. Nucleic Acids Symp Ser (1980) 2.32
Characterization of fully 2'-modified oligoribonucleotide hetero- and homoduplex hybridization and nuclease sensitivity. Nucleic Acids Res (1995) 2.30
Expanded CUG repeat RNAs form hairpins that activate the double-stranded RNA-dependent protein kinase PKR. RNA (2000) 2.25
Implication of RNA structure on antisense oligonucleotide hybridization kinetics. Biochemistry (1992) 2.17
How lac repressor recognizes lac operator. Proc Natl Acad Sci U S A (1978) 2.15
Thermal unfolding of a group I ribozyme: the low-temperature transition is primarily disruption of tertiary structure. Biochemistry (1993) 2.13
Laser temperature-jump, spectroscopic, and thermodynamic study of salt effects on duplex formation by dGCATGC. Biochemistry (1989) 2.13
Laser temperature-jump study of stacking in adenylic acid polymers. Biochemistry (1979) 2.12
Improved parameters for prediction of RNA structure. Cold Spring Harb Symp Quant Biol (1987) 2.08
Selective inhibition of mutant Ha-ras mRNA expression by antisense oligonucleotides. J Biol Chem (1992) 1.99
Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid. Biochemistry (1987) 1.95
Energetics of internal GU mismatches in ribooligonucleotide helixes. Biochemistry (1986) 1.92
Phosphorodithioate DNA as a potential therapeutic drug. Science (1993) 1.92
Total synthesis of the structural gene for the precursor of a tyrosine suppressor transfer RNA from Escherichia coli. 1. General introduction. J Biol Chem (1976) 1.91
Studies on polynucleotides. 103. Total synthesis of the structural gene for an alanine transfer ribonucleic acid from yeast. J Mol Biol (1972) 1.90
Effects of phosphorothioate capping on antisense oligonucleotide stability, hybridization and antiviral efficacy versus herpes simplex virus infection. Nucleic Acids Res (1991) 1.80
Thermodynamics of three-way multibranch loops in RNA. Biochemistry (2001) 1.78
Effects of GA mismatches on the structure and thermodynamics of RNA internal loops. Biochemistry (1990) 1.76
Solvent effects on the stability of A7U7p. Biochemistry (1985) 1.73
Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops. Biochemistry (1991) 1.71
Oligodeoxynucleotides containing 2'-O-modified adenosine: synthesis and effects on stability of DNA:RNA duplexes. Biochemistry (1993) 1.71
Studies on gene control regions XII. The functional significance of a lac operator constitutive mutation. Nucleic Acids Res (1979) 1.70
Nearest-neighbor parameters for G.U mismatches: [formula; see text] is destabilizing in the contexts [formula; see text] and [formula; see text] but stabilizing in [formula; see text]. Biochemistry (1991) 1.70
Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics. Biochemistry (1993) 1.70
Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods. Science (1992) 1.69
Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. RNA (1997) 1.68
Nucleoside-3'-phosphotriesters as key intermediates for the oligoribonucleotide synthesis. III. An improved preparation of nucleoside 3'-phosphotriesters, their 1H NMR characterization and new conditions for removal of 2-cyanoethyl group. Nucleic Acids Res (1976) 1.66
Relative thermodynamic stability of DNA, RNA, and DNA:RNA hybrid duplexes: relationship with base composition and structure. Biochemistry (1995) 1.65
Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides. Biochemistry (1990) 1.63
An alternate method for synthesis of double-stranded DNA segments. J Biol Chem (1982) 1.63
Chemical synthesis of deoxyoligonucleotides by the phosphoramidite method. Methods Enzymol (1987) 1.61
Effects of RNA secondary structure on cellular antisense activity. Nucleic Acids Res (2000) 1.60
A model for the stabilities of RNA hairpins based on a study of the sequence dependence of stability for hairpins of six nucleotides. Biochemistry (1994) 1.58
Pseudo--half-knot formation with RNA. Science (1992) 1.58
Studies on polynucleotides. CXVII. Hybridization of polydeoxynucleotides with tyrosine transfer RNA sequences to the r-strand of phi80psu + 3 DNA. J Mol Biol (1972) 1.58
Isolation and characterization of a cDNA clone for bovine cytochrome c oxidase subunit IV. Proc Natl Acad Sci U S A (1984) 1.58
Chemical synthesis and biological studies on mutated gene-control regions. Cold Spring Harb Symp Quant Biol (1983) 1.55
A periodic table of symmetric tandem mismatches in RNA. Biochemistry (1995) 1.55
Synthesis of the anticodon loop of Escherichia coli methionine transfer ribonucleic acid. J Am Chem Soc (1974) 1.52
Thermodynamic criteria for high hit rate antisense oligonucleotide design. Nucleic Acids Res (2003) 1.52