Significant dispersed recurrent DNA sequences in the Escherichia coli genome. Several new groups.

PubWeight™: 1.01‹?› | Rank: Top 15%

🔗 View Article (PMID 8445651)

Published in J Mol Biol on February 20, 1993

Authors

B E Blaisdell1, K E Rudd, A Matin, S Karlin

Author Affiliations

1: Mathematics Department, Stanford University, CA 94305.

Articles by these authors

(truncated to the top 100)

Prediction of complete gene structures in human genomic DNA. J Mol Biol (1997) 58.76

Finding the genes in genomic DNA. Curr Opin Struct Biol (1998) 7.31

Nuclear localization of EGF receptor and its potential new role as a transcription factor. Nat Cell Biol (2001) 7.22

Starvation-induced cross protection against heat or H2O2 challenge in Escherichia coli. J Bacteriol (1988) 6.18

Linkage and selection: two locus symmetric viability model. Theor Popul Biol (1970) 5.90

The putative sigma factor KatF has a central role in development of starvation-mediated general resistance in Escherichia coli. J Bacteriol (1991) 5.57

Over- and under-representation of short oligonucleotides in DNA sequences. Proc Natl Acad Sci U S A (1992) 5.55

Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli. Curr Biol (1996) 5.50

General two-locus selection models: some objectives, results and interpretations. Theor Popul Biol (1975) 5.16

Analysis of the Streptomyces coelicolor sigE gene reveals the existence of a subfamily of eubacterial RNA polymerase sigma factors involved in the regulation of extracytoplasmic functions. Proc Natl Acad Sci U S A (1994) 4.89

Starvation proteins in Escherichia coli: kinetics of synthesis and role in starvation survival. J Bacteriol (1986) 4.81

Polymorphisms for genetic and ecological systems with weak coupling. Theor Popul Biol (1972) 4.47

Analysing complex genetic traits with chromosome substitution strains. Nat Genet (2000) 3.92

Genetic map of Salmonella typhimurium, edition VIII. Microbiol Rev (1995) 3.87

Role of protein degradation in the survival of carbon-starved Escherichia coli and Salmonella typhimurium. J Bacteriol (1984) 3.86

Starvation-induced cross protection against osmotic challenge in Escherichia coli. J Bacteriol (1990) 3.84

Towards a theory of the evolution of modifier genes. Theor Popul Biol (1974) 3.79

Application of method of small parameters to multi-niche population genetic models. Theor Popul Biol (1972) 3.72

Rates and probabilities of fixation for two locus random mating finite populations without selection. Genetics (1968) 3.64

Methods and algorithms for statistical analysis of protein sequences. Proc Natl Acad Sci U S A (1992) 3.63

rpoE, the gene encoding the second heat-shock sigma factor, sigma E, in Escherichia coli. EMBO J (1995) 3.59

Regulation of Escherichia coli starvation sigma factor (sigma s) by ClpXP protease. J Bacteriol (1996) 3.59

A signal transducer for aerotaxis in Escherichia coli. J Bacteriol (1997) 3.47

Numerical studies on two-loci selection models with general viabilities. Theor Popul Biol (1975) 3.20

Role of protein synthesis in the survival of carbon-starved Escherichia coli K-12. J Bacteriol (1984) 3.11

Differential regulation by cyclic AMP of starvation protein synthesis in Escherichia coli. J Bacteriol (1988) 3.06

EmrR is a negative regulator of the Escherichia coli multidrug resistance pump EmrAB. J Bacteriol (1995) 2.99

Detection of new genes in a bacterial genome using Markov models for three gene classes. Nucleic Acids Res (1995) 2.89

New approaches for computer analysis of nucleic acid sequences. Proc Natl Acad Sci U S A (1983) 2.85

The putative sigma factor KatF is regulated posttranscriptionally during carbon starvation. J Bacteriol (1993) 2.75

Modulation of disease severity in cystic fibrosis transmembrane conductance regulator deficient mice by a secondary genetic factor. Nat Genet (1996) 2.65

Association of charge clusters with functional domains of cellular transcription factors. Proc Natl Acad Sci U S A (1989) 2.58

On mutation selection balance for two-locus haploid and diploid populations. Theor Popul Biol (1971) 2.57

Genealogy of the 129 inbred strains: 129/SvJ is a contaminated inbred strain. Mamm Genome (1997) 2.47

Random temporal variation in selection intensities: case of large population size. Theor Popul Biol (1974) 2.46

The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R. J Biol Chem (1998) 2.41

Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc Natl Acad Sci U S A (1999) 2.38

Pervasive CpG suppression in animal mitochondrial genomes. Proc Natl Acad Sci U S A (1994) 2.35

Genome-scale compositional comparisons in eukaryotes. Genome Res (2001) 2.32

Transport of lactate and succinate by membrane vesicles of Escherichia coli, Bacillus subtilis and a pseudomonas species. Eur J Biochem (1973) 2.32

Why are human G-protein-coupled receptors predominantly intronless? Trends Genet (1999) 2.31

Further analysis of negative assortative mating. Genetics (1968) 2.27

Role of RpoH, a heat shock regulator protein, in Escherichia coli carbon starvation protein synthesis and survival. J Bacteriol (1991) 2.24

Basal ppGpp level adjustment shown by new spoT mutants affect steady state growth rates and rrnA ribosomal promoter regulation in Escherichia coli. Mol Gen Genet (1988) 2.23

Organic nutrition of chemolithotrophic bacteria. Annu Rev Microbiol (1978) 2.18

New genes in old sequence: a strategy for finding genes in the bacterial genome. Trends Biochem Sci (1994) 2.18

Human cytomegalovirus origin of DNA replication (oriLyt) resides within a highly complex repetitive region. Proc Natl Acad Sci U S A (1992) 2.09

Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Nucleic Acids Res (1994) 2.04

Kinetics of deoxyribonucleic acid destruction and synthesis during growth of Bdellovibrio bacteriovorus strain 109D on pseudomonas putida and escherichia coli. J Bacteriol (1972) 2.02

Identification of significant sequence patterns in proteins. Methods Enzymol (1990) 1.99

deaD, a new Escherichia coli gene encoding a presumed ATP-dependent RNA helicase, can suppress a mutation in rpsB, the gene encoding ribosomal protein S2. J Bacteriol (1991) 1.96

Statistical methods for assessing linkage disequilibrium at the HLA-A, B, C loci. Ann Hum Genet (1981) 1.93

Mutations in the spoT gene of Salmonella typhimurium: effects on his operon expression. J Bacteriol (1985) 1.93

Analysis of biochemical genetic data on Jewish populations: II. Results and interpretations of heterogeneity indices and distance measures with respect to standards. Am J Hum Genet (1979) 1.91

Anatomy of Escherichia coli ribosome binding sites. J Mol Biol (2001) 1.90

Physiological basis of the selective advantage of a Spirillum sp. in a carbon-limited environment. J Gen Microbiol (1978) 1.86

Proton motive force and the physiological basis of delta pH maintenance in thiobacillus acidophilus. J Bacteriol (1982) 1.86

Molecular and functional characterization of a carbon starvation gene of Escherichia coli. J Mol Biol (1991) 1.85

Strand compositional asymmetry in bacterial and large viral genomes. Proc Natl Acad Sci U S A (1998) 1.84

Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications. Proc Natl Acad Sci U S A (1995) 1.82

Detecting alien genes in bacterial genomes. Ann N Y Acad Sci (1999) 1.80

Theoretical models of genetic map functions. Theor Popul Biol (1984) 1.76

Sequencing and analysis of bacterial genomes. Curr Biol (1996) 1.76

Characterization of the sigma 38-dependent expression of a core Escherichia coli starvation gene, pexB. J Bacteriol (1994) 1.75

his operons of Escherichia coli and Salmonella typhimurium are regulated by DNA supercoiling. Proc Natl Acad Sci U S A (1987) 1.69

Selective advantage of a Spirillum sp. in a carbon-limited environment. Accumulation of poly-beta-hydroxybutyric acid and its role in starvation. J Gen Microbiol (1979) 1.69

Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms. J Mol Evol (1997) 1.67

Similarities and dissimilarities of phage genomes. Proc Natl Acad Sci U S A (1996) 1.67

Characterization of the spoT gene of Escherichia coli. J Biol Chem (1989) 1.67

Purification to homogeneity and characterization of a novel Pseudomonas putida chromate reductase. Appl Environ Microbiol (2000) 1.64

Effect of starvation on cytoplasmic pH, proton motive force, and viability of an acidophilic bacterium, Thiobacillus acidophilus. J Bacteriol (1983) 1.64

Sibling and parent--offspring correlation estimation with variable family size. Proc Natl Acad Sci U S A (1981) 1.63

Cloning and in vivo and in vitro regulation of cyclic AMP-dependent carbon starvation genes from Escherichia coli. J Bacteriol (1990) 1.61

The Escherichia coli hflA locus encodes a putative GTP-binding protein and two membrane proteins, one of which contains a protease-like domain. Proc Natl Acad Sci U S A (1993) 1.59

Very long charge runs in systemic lupus erythematosus-associated autoantigens. Proc Natl Acad Sci U S A (1991) 1.58

Tetracycline rapidly reaches all the constituent cells of uropathogenic Escherichia coli biofilms. Antimicrob Agents Chemother (2002) 1.56

Influence of dilution rate on enzymes of intermediary metabolism in two freshwater bacteria grown in continuous culture. J Gen Microbiol (1976) 1.54

Clusters of charged residues in protein three-dimensional structures. Proc Natl Acad Sci U S A (1996) 1.50

Differential regulation of the mcb and emr operons of Escherichia coli: role of mcb in multidrug resistance. Antimicrob Agents Chemother (1996) 1.48

Effect of antecedent growth conditions on sensitivity of Escherichia coli to chlorine dioxide. Appl Environ Microbiol (1982) 1.48

Integration host factor binds to a unique class of complex repetitive extragenic DNA sequences in Escherichia coli. Mol Microbiol (1993) 1.47

Physical mapping of repetitive extragenic palindromic sequences in Escherichia coli and phylogenetic distribution among Escherichia coli strains and other enteric bacteria. J Bacteriol (1992) 1.47

The G-protein FlhF has a role in polar flagellar placement and general stress response induction in Pseudomonas putida. Mol Microbiol (2000) 1.46

Measures of residue density in protein structures. Proc Natl Acad Sci U S A (1999) 1.46

Protein sequence comparison at genome scale. Methods Enzymol (1996) 1.43

Analysis of genetic data on Jewish populations. I. Historical background, demographic features, and genetic markers. Am J Hum Genet (1979) 1.43

Chromate-reducing properties of soluble flavoproteins from Pseudomonas putida and Escherichia coli. Appl Environ Microbiol (2004) 1.43

Analysis of models with homozygote x heterozygote matings. Genetics (1968) 1.42

The sigma S level in starving Escherichia coli cells increases solely as a result of its increased stability, despite decreased synthesis. Mol Microbiol (1997) 1.41

New device for high-throughput viability screening of flow biofilms. Appl Environ Microbiol (2010) 1.41

Conservation among HSP60 sequences in relation to structure, function, and evolution. Protein Sci (2000) 1.41

Structured exploratory data analysis (SEDA) for determining mode of inheritance of quantitative traits. I. Simulation studies on the effect of background distributions. Am J Hum Genet (1981) 1.40

Linkage and selection: new equilibrium properties of the two-locus symmetric viability model. Proc Natl Acad Sci U S A (1969) 1.40

Cellular levels, excretion, and synthesis rates of cyclic AMP in Escherichia coli grown in continuous culture. J Bacteriol (1982) 1.35

Highly expressed and alien genes of the Synechocystis genome. Nucleic Acids Res (2001) 1.33

An efficient algorithm for identifying matches with errors in multiple long molecular sequences. J Mol Biol (1991) 1.32

Central equilibria in multilocus systems. I. Generalized nonepistatic selection regimes. Genetics (1979) 1.32

Unique and overlapping pollutant stress proteins of Escherichia coli. Appl Environ Microbiol (1992) 1.31

A symmetric-iterated multiple alignment of protein sequences. J Mol Biol (1998) 1.31

Dependence of lactose metabolism upon mutarotase encoded in the gal operon in Escherichia coli. J Mol Biol (1994) 1.31