Rapid protein structure classification using one-dimensional structure profiles on the bioSCAN parallel computer.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 8808584)

Published in Comput Appl Biosci on December 01, 1995

Authors

D L Hoffman1, S Laiter, R K Singh, I I Vaisman, A Tropsha

Author Affiliations

1: Department of Computer Science, University of North Carolina at Chapel Hill 27599-3175, USA.

Articles by these authors

The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proc Natl Acad Sci U S A (2001) 7.00

Use of expiratory CT pulmonary angiography to reduce inspiration and breath-hold associated artefact: contrast dynamics and implications for scan protocol. Clin Radiol (2011) 2.30

Delaunay tessellation of proteins: four body nearest-neighbor propensities of amino acid residues. J Comput Biol (1996) 2.29

Expression of interleukin-8 by human melanoma cells up-regulates MMP-2 activity and increases tumor growth and metastasis. Am J Pathol (1997) 2.15

Chemistry and uses of pectin--a review. Crit Rev Food Sci Nutr (1997) 2.08

Isolation and characterization of metastatic variants from human transitional cell carcinoma passaged by orthotopic implantation in athymic nude mice. J Urol (1995) 1.82

Comparative evaluation of parasitology and serological tests in the diagnosis of visceral leishmaniasis in India: a phase III diagnostic accuracy study. Trop Med Int Health (2007) 1.77

Serological diagnosis of Indian visceral leishmaniasis: direct agglutination test versus rK39 strip test. Trans R Soc Trop Med Hyg (2005) 1.75

Expression of interleukin 8 and its receptors in human colon carcinoma cells with different metastatic potentials. Clin Cancer Res (2001) 1.64

A case of disseminated abdominal hydatidosis. J Assoc Physicians India (2008) 1.63

Catabolic instability, plasmid gene deletion and recombination in Alcaligenes sp. BR60. Arch Microbiol (1988) 1.55

Prevalence and distribution of peste des petits ruminants virus infection in small ruminants in India. Rev Sci Tech (2004) 1.49

Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2. Mol Microbiol (1996) 1.49

Comparative sequence analysis of major envelope protein gene (B2L) of Indian orf viruses isolated from sheep and goats. Vet Microbiol (2006) 1.48

An efficient projection protocol for chemical databases: singular value decomposition combined with truncated-newton minimization. J Chem Inf Comput Sci (2000) 1.44

Pediatric cardiac transplantation using hearts previously refused for quality: a single center experience. Am J Transplant (2013) 1.41

Antitumor agents. 152. In vitro inhibitory activity of etoposide derivative NPF against human tumor cell lines and a study of its conformation by X-ray crystallography, molecular modeling, and NMR spectroscopy. J Med Chem (1994) 1.40

Completing the sequence of the Sulfolobus solfataricus P2 genome. Extremophiles (1998) 1.39

Evaluation of PCR for diagnosis of Indian kala-azar and assessment of cure. J Clin Microbiol (2005) 1.38

Dilatation of congenital valvular aortic stenosis using Inoue balloon. Cathet Cardiovasc Diagn (1997) 1.38

Cross-validated R2-guided region selection for comparative molecular field analysis: a simple method to achieve consistent results. J Med Chem (1995) 1.37

Celphos poisoning. Indian Pediatr (1991) 1.37

In vitro invasiveness of DU-145 human prostate carcinoma cells is modulated by EGF receptor-mediated signals. Clin Exp Metastasis (1995) 1.32

Degree of selective constraint as an explanation of the different rates of evolution of gender-specific mitochondrial DNA lineages in the mussel mytilus. Genetics (1996) 1.30

1 alpha,25-Dihydroxyvitamin D (calcitriol) inhibits the invasiveness of human prostate cancer cells. Cancer Epidemiol Biomarkers Prev (1997) 1.29

The current status of sheep pox disease. Comp Immunol Microbiol Infect Dis (2006) 1.28

CXCR1 and CXCR2 enhances human melanoma tumourigenesis, growth and invasion. Br J Cancer (2009) 1.27

Amphotericin B deoxycholate treatment of visceral leishmaniasis with newer modes of administration and precautions: a study of 938 cases. Trans R Soc Trop Med Hyg (1999) 1.26

Chronomics: circadian and circaseptan timing of radiotherapy, drugs, calories, perhaps nutriceuticals and beyond. J Exp Ther Oncol (2003) 1.26

Chronoastrobiology: proposal, nine conferences, heliogeomagnetics, transyears, near-weeks, near-decades, phylogenetic and ontogenetic memories. Biomed Pharmacother (2004) 1.24

Ossicular chain status in chronic suppurative otitis media in adults. Indian J Otolaryngol Head Neck Surg (2011) 1.23

Isolation and preliminary characterization of mutants of the cyanobacterium Nostoc muscorum resistant to growth inhibition by methylamine. Mol Gen Genet (1981) 1.23

Regulation of interleukin-8 expression in human melanoma cells by the organ environment. Cancer Res (1995) 1.21

Studies on essential oils: part 10; antibacterial activity of volatile oils of some spices. Phytother Res (2002) 1.19

Immunization with the larger isoform of mouse glutamic acid decarboxylase (GAD67) prevents autoimmune diabetes in NOD mice. Diabetes (1994) 1.19

Overexpression of macrophage inhibitory cytokine-1 induces metastasis of human prostate cancer cells through the FAK-RhoA signaling pathway. Oncogene (2009) 1.19

Psychiatric morbidity in psoriasis and vitiligo: a comparative study. J Dermatol (2001) 1.17

Four-body potentials reveal protein-specific correlations to stability changes caused by hydrophobic core mutations. J Mol Biol (2001) 1.17

Epidemiology of bacterial colonization at intensive care unit admission with emphasis on extended-spectrum beta-lactamase- and metallo-beta-lactamase-producing Gram-negative bacteria--an Indian experience. J Med Microbiol (2010) 1.16

Statistical significance of hierarchical multi-body potentials based on Delaunay tessellation and their application in sequence-structure alignment. Protein Sci (1997) 1.15

Comparative efficacy of peste des petits ruminants (PPR) vaccines. Biologicals (2010) 1.13

Identifying subgroups of the general population that may be susceptible to short-term increases in particulate air pollution: a time-series study in Montreal, Quebec. Res Rep Health Eff Inst (2000) 1.12

One-step multiplex RT-PCR assay for the detection of peste des petits ruminants virus in clinical samples. Vet Res Commun (2006) 1.07

Complete nucleotide sequence of the Sulfolobus islandicus multicopy plasmid pRN1. Plasmid (1996) 1.06

Regulation of vascular endothelial growth factor expression in human colon carcinoma cells by cell density. Cancer Res (1996) 1.05

Automated pharmacophore identification for large chemical data sets. J Chem Inf Comput Sci (1999) 1.04

Rapid differentiation of Mycobacterium bovis and Mycobacterium tuberculosis based on a 12.7-kb fragment by a single tube multiplex-PCR. Vet Microbiol (2005) 1.03

A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene. Proc Natl Acad Sci U S A (1994) 1.02

Conformational analysis of D1 dopamine receptor agonists: pharmacophore assessment and receptor mapping. J Med Chem (1996) 1.02

Zoonotic infections of buffalopox in India. Zoonoses Public Health (2010) 1.02

Recent studies of carotenoid biosynthesis in bacteria. Pure Appl Chem (1973) 1.02

Opportunity of detecting pre-hypertension: worldwide data on blood pressure overswinging. Biomed Pharmacother (2005) 1.01

Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry. Extremophiles (1998) 1.01

Antitumor agents. 199. Three-dimensional quantitative structure-activity relationship study of the colchicine binding site ligands using comparative molecular field analysis. J Med Chem (2000) 1.01

Flt3 ligand and granulocyte-macrophage colony-stimulating factor preferentially expand and stimulate different dendritic and T-cell subsets. Exp Hematol (2001) 1.00

A multiplex-PCR for the differentiation of Mycobacterium bovis and Mycobacterium tuberculosis. FEMS Microbiol Lett (2002) 0.99

Experimental studies on immunosuppressive effects of peste des petits ruminants (PPR) virus in goats. Comp Immunol Microbiol Infect Dis (2005) 0.99

Double dissociation of spatial impairments and perseveration following selective prefrontal lesions in rats. J Comp Physiol Psychol (1974) 0.99

Teaching medical students about radiation protection--what do they need to know? Clin Radiol (2008) 0.99

Expression of the JE/MCP-1 gene suppresses metastatic potential in murine colon carcinoma cells. Cancer Immunol Immunother (1994) 0.98

QSAR analysis of the toxicity of nitroaromatics in Tetrahymena pyriformis: structural factors and possible modes of action. SAR QSAR Environ Res (2011) 0.98

The "random-coil" state of proteins: comparison of database statistics and molecular simulations. Proteins (1999) 0.97

Accurate classification of protein structural families using coherent subgraph analysis. Pac Symp Biocomput (2004) 0.97

Synthesis, evaluation, and comparative molecular field analysis of 1-phenyl-3-amino-1,2,3,4-tetrahydronaphthalenes as ligands for histamine H(1) receptors. J Med Chem (1999) 0.97

Equine influenza outbreak in India (2008-09): virus isolation, sero-epidemiology and phylogenetic analysis of HA gene. Vet Microbiol (2010) 0.97

Differentially expressed membrane transporters in rice roots may contribute to cultivar dependent salt tolerance. J Exp Bot (2009) 0.97

Zoonotic cases of camelpox infection in India. Vet Microbiol (2011) 0.96

Miltefosine in a case of visceral leishmaniasis with HIV co-infection; and rising incidence of this disease in India. Trans R Soc Trop Med Hyg (2001) 0.95

Molecular simulations of beta-sheet twisting. J Mol Biol (1996) 0.95

Prevalence of classical swine fever virus in India: a 6-year study (2004-2010). Transbound Emerg Dis (2011) 0.95

Energetic decomposition of the alpha-helix-coil equilibrium of a dynamic model system. Biopolymers (1996) 0.95

Free energies for refolding of the common beta turn into the inverse-common beta turn: simulation of the role of D/L chirality. Proc Natl Acad Sci U S A (1993) 0.95

Development of an indirect ELISA for the detection of antibodies against Peste-des-petits-ruminants virus in small ruminants. Vet Res Commun (2006) 0.95

Detection of toxoplasmosis in experimentally infected goats by PCR. Vet Rec (2004) 0.94

Osteogenic potential of cissus qudrangularis assessed with osteopontin expression. Natl J Maxillofac Surg (2013) 0.94

Critical determinants of neoplastic angiogenesis. Cancer J (2000) 0.94

Biosynthesis of spheroidene and hydroxyspheroidene in Rhodopseudomonas species: experiments with nicotine as inhibitor. Biochem J (1973) 0.94

Direct vs. indirect sinus lift procedure: A comparison. Natl J Maxillofac Surg (2012) 0.94

Aeromonas caviae septicemia in immunocompetent gastrointestinal carriers. Braz J Infect Dis (2008) 0.93

Development of a novel human extracellular matrix for quantitation of the invasiveness of human cells. Cancer Lett (1993) 0.93

Retinoic acid-dependent transforming growth factor-beta 2-mediated induction of MUC4 mucin expression in human pancreatic tumor cells follows retinoic acid receptor-alpha signaling pathway. J Biol Chem (2000) 0.93

Commonly used Indian abortifacient plants with special reference to their teratologic effects in rats. J Ethnopharmacol (1992) 0.93

Circadian periodicity of urinary volume, creatinine and 5-hydroxyindole acetic acid excretion in healthy Indians. Life Sci (2000) 0.93

Daily versus alternate-day regimen of amphotericin B in the treatment of kala-azar: a randomized comparison. Bull World Health Organ (1994) 0.93

Spleen but not tumor infiltration by dendritic and T cells is increased by intravenous adenovirus-Flt3 ligand injection. Cancer Gene Ther (2007) 0.93

Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2. Genome (2000) 0.93

Sequence and phylogenetic analyses of the structural genes of virulent isolates and vaccine strains of peste des petits ruminants virus from India. Transbound Emerg Dis (2010) 0.92

Detection of Theileria annulata carrier cattle by PCR. Indian J Exp Biol (2000) 0.92

Arsenic induced toxicity on testicular tissue of mice. Indian J Physiol Pharmacol (2008) 0.92

Chronomics of circulating plasma lipid peroxides and anti-oxidant enzymes and other related molecules in cirrhosis of liver. In the memory of late Shri Chetan Singh. Biomed Pharmacother (2005) 0.91

Quantitative structure-activity relationship modeling of dopamine D(1) antagonists using comparative molecular field analysis, genetic algorithms-partial least-squares, and K nearest neighbor methods. J Med Chem (1999) 0.91

Isolation and characterization of an Indian ORF virus from goats. Zoonoses Public Health (2007) 0.91

The nuclear 18S ribosomal RNA gene of the red alga Hildenbrandia rubra contains a group I intron. Nucleic Acids Res (1993) 0.91

Interplay between human papilloma virus infection and p53 gene alterations in head and neck squamous cell carcinoma of an Indian patient population. J Clin Pathol (2006) 0.90

Circadian periodicity of plasma cortison (17-OHCS) levels in normal, traumatized, corticotrophin and dexamethasone treated rabbits. Indian J Med Res (1975) 0.90

Molecular cloning and characterization of an invertebrate cellular retinoic acid binding protein. Proc Natl Acad Sci U S A (1998) 0.90

Sero-epidemiological study of peste des petits ruminants in sheep and goats in India between 2003 and 2009. Rev Sci Tech (2011) 0.90

Prevalence of pernicious anaemia in patients with Type 1 diabetes mellitus and autoimmune thyroid disease. Diabet Med (2000) 0.89