Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.).

PubWeight™: 3.75‹?› | Rank: Top 1%

🔗 View Article (PMID 8914521)

Published in Mol Gen Genet on October 16, 1996

Authors

O Panaud1, X Chen, S R McCouch

Author Affiliations

1: Department of Plant Breeding, Cornell University, Ithaca, NY 14853-1901, USA.

Articles citing this

Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res (2001) 9.95

Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci U S A (1997) 4.38

Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics (2000) 3.39

Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics (1998) 2.91

Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids. Genetics (1999) 2.19

The population structure of African cultivated rice oryza glaberrima (Steud.): evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation. Genetics (2004) 2.10

Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.). Mol Genet Genomics (2004) 1.96

Influence of ethnic traditional cultures on genetic diversity of rice landraces under on-farm conservation in southwest China. J Ethnobiol Ethnomed (2016) 1.38

Nonindependent domestication of the two rice subspecies, Oryza sativa ssp. indica and ssp. japonica, demonstrated by multilocus microsatellites. Genetics (2008) 1.34

Population structure and genetic diversity in a rice core collection (Oryza sativa L.) investigated with SSR markers. PLoS One (2011) 1.34

Quantitative trait loci for component physiological traits determining salt tolerance in rice. Plant Physiol (2001) 1.26

A genome-wide microsatellite polymorphism database for the indica and japonica rice. DNA Res (2007) 1.21

Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India. BMC Genet (2013) 1.21

Genetic structure and isolation by distance in a landrace of Thai rice. Proc Natl Acad Sci U S A (2009) 1.19

Sequence-based novel genomic microsatellite markers for robust genotyping purposes in foxtail millet [Setaria italica (L.) P. Beauv]. Plant Cell Rep (2011) 1.16

Saturation mapping of QTL regions and identification of putative candidate genes for drought tolerance in rice. Mol Genet Genomics (2004) 1.13

Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL. Genetics (2006) 1.10

Using chromosome introgression lines to map quantitative trait loci for photosynthesis parameters in rice (Oryza sativa L.) leaves under drought and well-watered field conditions. J Exp Bot (2011) 1.09

Rice molecular breeding laboratories in the genomics era: Current status and future considerations. Int J Plant Genomics (2008) 1.04

Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga. Mol Breed (2015) 1.01

Association mapping for important agronomic traits in core collection of rice (Oryza sativa L.) with SSR markers. PLoS One (2014) 0.99

Multiple major QTL lead to stable yield performance of rice cultivars across varying drought intensities. BMC Genet (2014) 0.99

Complexity of indica-japonica varietal differentiation in Bangladesh rice landraces revealed by microsatellite markers. Breed Sci (2013) 0.96

Genotypic variation in element concentrations in brown rice from Yunnan landraces in China. Environ Geochem Health (2009) 0.95

Genetic variability of the bollworm, Helicoverpa armigera, occurring on different host plants. J Insect Sci (2006) 0.94

Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. Rice (N Y) (2015) 0.91

Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.). Planta (2007) 0.90

Effect of quantitative trait loci for seed shattering on abscission layer formation in Asian wild rice Oryza rufipogon. Breed Sci (2014) 0.88

Isolation and characterization of a rice mutant with narrow and rolled leaves. Planta (2010) 0.86

Terminal repeat retrotransposon in miniature (TRIM) as DNA markers in Brassica relatives. Mol Genet Genomics (2007) 0.85

Marker assisted pyramiding of drought yield QTLs into a popular Malaysian rice cultivar, MR219. BMC Genet (2016) 0.84

Cytological diploidization and rapid genome changes of the newly synthesized allotetraploids Cucumis x hytivus. Planta (2006) 0.84

Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China. PLoS One (2015) 0.84

QTL mapping reveals a tight linkage between QTLs for grain weight and panicle spikelet number in rice. Rice (N Y) (2013) 0.83

A recessive gene controlling male sterility sensitive to short daylength/low temperature in wheat (Triticum aestivum L.). J Zhejiang Univ Sci B (2011) 0.83

Potential of (GATA)n microsatellites from rice for inter- and intra-specific variability studies. BMC Evol Biol (2001) 0.83

Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people's republic of Korea (DPRK; North Korea). Rice (N Y) (2014) 0.83

An optimal DNA pooling strategy for progressive fine mapping. Genetica (2008) 0.82

Action of multiple intra-QTL genes concerted around a co-localized transcription factor underpins a large effect QTL. Sci Rep (2015) 0.82

Genetic characterization of asymmetric somatic hybrids between Bupleurum scorzonerifolium Willd and Triticum aestivum L.: potential application to the study of the wheat genome. Planta (2005) 0.82

Genetic analysis of a local population of Oryza glumaepatula using SSR markers: implications for management and conservation programs. Genetica (2009) 0.81

Profiling of selected indigenous rice (Oryza sativa L.) landraces of Rarh Bengal in relation to osmotic stress tolerance. Physiol Mol Biol Plants (2012) 0.81

Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice. Rice (N Y) (2015) 0.81

Pyramiding of drought yield QTLs into a high quality Malaysian rice cultivar MRQ74 improves yield under reproductive stage drought. Rice (N Y) (2016) 0.80

Estimation of the outcrossing rate for annual Asian wild rice under field conditions. Breed Sci (2012) 0.80

An efficient protocol for isolation of inhibitor-free nucleic acids even from recalcitrant plants. 3 Biotech (2016) 0.80

Fine mapping of qRC10-2, a quantitative trait locus for cold tolerance of rice roots at seedling and mature stages. PLoS One (2014) 0.79

Chromosomal localization and distribution of simple sequence repeats and the Arabidopsis-type telomere sequence in the genome of Cicer arietinum L. Chromosome Res (1998) 0.78

High-density mapping of quantitative trait loci for grain-weight and spikelet number in rice. Rice (N Y) (2014) 0.78

Overcoming inter-subspecific hybrid sterility in rice by developing indica-compatible japonica lines. Sci Rep (2016) 0.78

Comparisons of mutation rate variation at genome-wide microsatellites: evolutionary insights from two cultivated rice and their wild relatives. BMC Evol Biol (2008) 0.78

Toward the positional cloning of qBlsr5a, a QTL underlying resistance to bacterial leaf streak, using overlapping sub-CSSLs in rice. PLoS One (2014) 0.78

Simple sequence repeat analyses of interspecific hybrids and MAALs of Oryza officinalis and Oryza sativa. Genetica (2007) 0.77

Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311. BMC Genomics (2016) 0.77

Evaluation of genetic variation among wild rice populations in Cambodia. Breed Sci (2015) 0.75

Identification and linkage analysis of a new rice bacterial blight resistance gene from XM14, a mutant line from IR24. Breed Sci (2016) 0.75

Lowered Diversity and Increased Inbreeding Depression within Peripheral Populations of Wild Rice Oryza rufipogon. PLoS One (2016) 0.75

Population Structure, Genetic Diversity and Molecular Marker-Trait Association Analysis for High Temperature Stress Tolerance in Rice. PLoS One (2016) 0.75

Genetic analysis and fine mapping of a semi-dwarf gene in a centromeric region in rice (Oryza sativa L.). Breed Sci (2013) 0.75

QTL Location and Epistatic Effect Analysis of 100-Seed Weight Using Wild Soybean (Glycine soja Sieb. & Zucc.) Chromosome Segment Substitution Lines. PLoS One (2016) 0.75

Identification, cross-taxon transferability and application of full-length cDNA SSR markers in Phyllostachys pubescens. Springerplus (2014) 0.75

Construction of whole genome radiation hybrid panels and map of chromosome 5A of wheat using asymmetric somatic hybridization. PLoS One (2012) 0.75

Association Mapping for Aluminum Tolerance in a Core Collection of Rice Landraces. Front Plant Sci (2016) 0.75

QTL Mapping of Grain Quality Traits Using Introgression Lines Carrying Oryza rufipogon Chromosome Segments in Japonica Rice. Rice (N Y) (2016) 0.75

Development of genome-wide PCR-based markers from insertion, deletion and single nucleotide polymorphisms for closely related Japanese rice cultivars and identification of QTLs for the appearance of cooked rice and polished rice. Breed Sci (2016) 0.75

Genome-Wide Association Mapping Reveals Multiple QTLs Governing Tolerance Response for Seedling Stage Chilling Stress in Indica Rice. Front Plant Sci (2017) 0.75

Estimation of loci involved in non-shattering of seeds in early rice domestication. Genetica (2017) 0.75

Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha. Mol Genet Genomics (2016) 0.75

Articles by these authors

TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res (2000) 15.70

The TRANSFAC system on gene expression regulation. Nucleic Acids Res (2001) 13.63

ER stress induces cleavage of membrane-bound ATF6 by the same proteases that process SREBPs. Mol Cell (2000) 9.13

Seed banks and molecular maps: unlocking genetic potential from the wild. Science (1997) 8.64

RAGE and amyloid-beta peptide neurotoxicity in Alzheimer's disease. Nature (1996) 7.04

Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms. Nucleic Acids Res (1999) 6.70

A genome-wide search for human non-insulin-dependent (type 2) diabetes genes reveals a major susceptibility locus on chromosome 2. Nat Genet (1996) 6.58

Natural engineering principles of electron tunnelling in biological oxidation-reduction. Nature (1999) 6.38

Revealing the maximum strength in nanotwinned copper. Science (2009) 6.27

Stroke incidence among white, black, and Hispanic residents of an urban community: the Northern Manhattan Stroke Study. Am J Epidemiol (1998) 5.54

Mutations in the hepatocyte nuclear factor-1alpha gene in maturity-onset diabetes of the young (MODY3) Nature (1996) 5.32

Mechanisms of fatty acid-induced inhibition of glucose uptake. J Clin Invest (1994) 5.12

Gene delivery to skeletal muscle results in sustained expression and systemic delivery of a therapeutic protein. Proc Natl Acad Sci U S A (1996) 4.76

A hierarchical network of interreceptor interactions determines signal transduction by Neu differentiation factor/neuregulin and epidermal growth factor. Mol Cell Biol (1996) 4.47

Cdc25 cell-cycle phosphatase as a target of c-myc. Nature (1996) 4.23

Infectivity, transmission, and pathology of human-isolated H7N9 influenza virus in ferrets and pigs. Science (2013) 4.17

CD8(+) T cells can block herpes simplex virus type 1 (HSV-1) reactivation from latency in sensory neurons. J Exp Med (2000) 3.62

Effects of p21(Cip1/Waf1) at both the G1/S and the G2/M cell cycle transitions: pRb is a critical determinant in blocking DNA replication and in preventing endoreduplication. Mol Cell Biol (1998) 3.61

Functionalized graphene sheets for polymer nanocomposites. Nat Nanotechnol (2008) 3.45

SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Res (2003) 3.34

Depletion of murine CD4+ T lymphocytes prevents antigen-induced airway hyperreactivity and pulmonary eosinophilia. Am J Respir Cell Mol Biol (1994) 3.32

ErbB-2 is a common auxiliary subunit of NDF and EGF receptors: implications for breast cancer. EMBO J (1996) 3.22

Regulation of CSF1 promoter by the SWI/SNF-like BAF complex. Cell (2001) 3.10

Evolutionarily conserved sequences on human chromosome 21. Genome Res (2001) 2.95

Association between obesity and kidney disease: a systematic review and meta-analysis. Kidney Int (2007) 2.92

Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics (1998) 2.91

Mechanism of hypertriglyceridemia in human apolipoprotein (apo) CIII transgenic mice. Diminished very low density lipoprotein fractional catabolic rate associated with increased apo CIII and reduced apo E on the particles. J Clin Invest (1992) 2.80

An information-based sequence distance and its application to whole mitochondrial genome phylogeny. Bioinformatics (2001) 2.80

Parallel genotyping of human SNPs using generic high-density oligonucleotide tag arrays. Genome Res (2000) 2.79

Testosterone dose-response relationships in healthy young men. Am J Physiol Endocrinol Metab (2001) 2.79

Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor Appl Genet (2003) 2.76

Filamentous growth of Candida albicans in response to physical environmental cues and its regulation by the unique CZF1 gene. Mol Microbiol (1999) 2.74

Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol Gen Genet (1997) 2.70

The forgotten serine. A critical role for Ser-2035.42 in ligand binding to and activation of the beta 2-adrenergic receptor. J Biol Chem (2000) 2.67

Effects of fat on insulin-stimulated carbohydrate metabolism in normal men. J Clin Invest (1991) 2.65

RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics (1994) 2.60

Perceived discrimination and early substance abuse among American Indian children. J Health Soc Behav (2001) 2.60

Genetic evidence for the involvement of tau in progressive supranuclear palsy. Ann Neurol (1997) 2.60

Mutagenesis identifies new signals for beta-amyloid precursor protein endocytosis, turnover, and the generation of secreted fragments, including Abeta42. J Biol Chem (1999) 2.57

A proteolytic fragment from the central region of p53 has marked sequence-specific DNA-binding activity when generated from wild-type but not from oncogenic mutant p53 protein. Genes Dev (1993) 2.53

The common and distinct target genes of the p53 family transcription factors. Cell Mol Life Sci (2004) 2.47

Agrobacterium-Mediated Transformation of Fusarium oxysporum: An Efficient Tool for Insertional Mutagenesis and Gene Transfer. Phytopathology (2001) 2.43

An intracellular protein that binds amyloid-beta peptide and mediates neurotoxicity in Alzheimer's disease. Nature (1997) 2.42

p63alpha and DeltaNp63alpha can induce cell cycle arrest and apoptosis and differentially regulate p53 target genes. Oncogene (2001) 2.40

Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor Appl Genet (1995) 2.39

English language use as a risk factor for smoking initiation among Hispanic and Asian American adolescents: evidence for mediation by tobacco-related beliefs and social norms. Health Psychol (2000) 2.36

Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA. Nature (1999) 2.35

Comparative mapping in grasses. Wheat relationships. Mol Gen Genet (1995) 2.33

A whole genome association study of neuroticism using DNA pooling. Mol Psychiatry (2007) 2.30

ABT-378, a highly potent inhibitor of the human immunodeficiency virus protease. Antimicrob Agents Chemother (1998) 2.23

NANOG promotes cancer stem cell characteristics and prostate cancer resistance to androgen deprivation. Oncogene (2011) 2.22

Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids. Genetics (1999) 2.19

The role of social networks and media receptivity in predicting age of smoking initiation: a proportional hazards model of risk and protective factors. Addict Behav (1999) 2.14

Lovastatin-mediated G1 arrest is through inhibition of the proteasome, independent of hydroxymethyl glutaryl-CoA reductase. Proc Natl Acad Sci U S A (1999) 2.14

The p53 protein is an unusually shaped tetramer that binds directly to DNA. Proc Natl Acad Sci U S A (1993) 2.11

Effect of fasting on serum leptin in normal human subjects. J Clin Endocrinol Metab (1996) 2.10

Tic20 and Tic22 are new components of the protein import apparatus at the chloroplast inner envelope membrane. J Cell Biol (1998) 2.08

Defective DNA polymerase-delta proofreading causes cancer susceptibility in mice. Nat Med (2001) 2.08

A gene expression screen in zebrafish embryogenesis. Genome Res (2001) 2.08

Localization of an ataxia-telangiectasia gene to an approximately 500-kb interval on chromosome 11q23.1: linkage analysis of 176 families by an international consortium. Am J Hum Genet (1995) 2.07

The potential tumor suppressor p73 differentially regulates cellular p53 target genes. Cancer Res (1998) 2.06

Detection of antigen-antibody binding events with the atomic force microscope. Biochemistry (1997) 2.05

PharmGED: pharmacogenetic effect database. Clin Pharmacol Ther (2007) 2.02

Intestinal-enriched Krüppel-like factor (Krüppel-like factor 5) is a positive regulator of cellular proliferation. J Biol Chem (2001) 2.01

Noninvasive Raman spectroscopy in living mice for evaluation of tumor targeting with carbon nanotubes. Nano Lett (2008) 2.01

Severe diffuse non-scarring hair loss in systemic lupus erythematosus - clinical and histopathological analysis of four cases. J Eur Acad Dermatol Venereol (2011) 1.99

Prevalence of Staphylococcus aureus carrying Panton-Valentine leukocidin genes among isolates from hospitalised patients in China. Clin Microbiol Infect (2008) 1.95

Interactions within the yeast t-SNARE Sso1p that control SNARE complex assembly. Nat Struct Biol (2000) 1.94

Deletion analysis of K+ channel assembly. Neuron (1993) 1.91

Murine double nullizygotes of the angiotensin type 1A and 1B receptor genes duplicate severe abnormal phenotypes of angiotensinogen nullizygotes. J Clin Invest (1998) 1.90

Use of whole genome sequence data to infer baculovirus phylogeny. J Virol (2001) 1.89

Measurement of the rate of nu(e) + d --> p + p + e(-) interactions produced by (8)B solar neutrinos at the Sudbury Neutrino Observatory. Phys Rev Lett (2001) 1.88

Evidence for a circadian rhythm of insulin secretion. Am J Physiol (1996) 1.86

Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat. Genome (1995) 1.85

Inhibition of FEN-1 processing by DNA secondary structure at trinucleotide repeats. Mol Cell (1999) 1.83

Amyloid-beta peptide-receptor for advanced glycation endproduct interaction elicits neuronal expression of macrophage-colony stimulating factor: a proinflammatory pathway in Alzheimer disease. Proc Natl Acad Sci U S A (1997) 1.82

Aclarubicin treatment restores SMN levels to cells derived from type I spinal muscular atrophy patients. Hum Mol Genet (2001) 1.80

Identification of a novel p53 functional domain that is necessary for mediating apoptosis. J Biol Chem (1998) 1.80

Evidence for an oxygen diffusion model for the electric pulse induced resistance change effect in transition-metal oxides. Phys Rev Lett (2007) 1.78

Effects of a 48-h fat infusion on insulin secretion and glucose utilization. Diabetes (1995) 1.76

Direct inhibition of Bruton's tyrosine kinase by IBtk, a Btk-binding protein. Nat Immunol (2001) 1.74

Endocytosis deficiency of epidermal growth factor (EGF) receptor-ErbB2 heterodimers in response to EGF stimulation. Mol Biol Cell (1999) 1.74

Glycated tau protein in Alzheimer disease: a mechanism for induction of oxidant stress. Proc Natl Acad Sci U S A (1994) 1.71

Fidelity of Escherichia coli DNA polymerase III holoenzyme. The effects of beta, gamma complex processivity proteins and epsilon proofreading exonuclease on nucleotide misincorporation efficiencies. J Biol Chem (1997) 1.70

CYP17 promoter polymorphism and breast cancer in Australian women under age forty years. J Natl Cancer Inst (2000) 1.69

Non-enzymatically glycated tau in Alzheimer's disease induces neuronal oxidant stress resulting in cytokine gene expression and release of amyloid beta-peptide. Nat Med (1995) 1.69

Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Mol Biol (1997) 1.68

GAA instability in Friedreich's Ataxia shares a common, DNA-directed and intraallelic mechanism with other trinucleotide diseases. Mol Cell (1998) 1.68

Very low rates of hip fracture in Beijing, People's Republic of China the Beijing Osteoporosis Project. Am J Epidemiol (1996) 1.68

HIV-related sexual behaviour among migrants and non-migrants in a rural area of China: role of rural-to-urban migration. Public Health (2006) 1.67

Differential expression of MMAC/PTEN in glioblastoma multiforme: relationship to localization and prognosis. Cancer Res (1999) 1.66

Comparative analysis of flow cytometry and polymerase chain reaction for the detection of minimal residual disease in childhood acute lymphoblastic leukemia. Leukemia (2004) 1.65

Iron oxide nanoparticle platform for biomedical applications. Curr Med Chem (2009) 1.63

Neu differentiation factor activation of ErbB-3 and ErbB-4 is cell specific and displays a differential requirement for ErbB-2. Mol Cell Biol (1995) 1.63

Universal SNP genotyping assay with fluorescence polarization detection. Biotechniques (2001) 1.62

Diagnosis of latent tuberculosis infection in bacille Calmette-Guérin vaccinated subjects in China by interferon-gamma ELISpot assay. Int J Tuberc Lung Dis (2010) 1.61

Efficacy of antiarrhythmic drugs in patients with arrhythmogenic right ventricular disease. Results in patients with inducible and noninducible ventricular tachycardia. Circulation (1992) 1.61

An anatomically and electrogram-guided stepwise approach for effective and safe catheter ablation of the fast pathway for elimination of atrioventricular node reentrant tachycardia. J Am Coll Cardiol (1995) 1.61

Search for supersymmetry using final states with one lepton, jets, and missing transverse momentum with the ATLAS detector in √s=7 TeV pp collisions. Phys Rev Lett (2011) 1.60