Published in Microb Ecol on August 01, 1999
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A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J Microbiol Methods (2007) 4.20
Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl Environ Microbiol (2003) 3.45
Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Appl Environ Microbiol (2006) 2.86
Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. PLoS Comput Biol (2012) 2.50
rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl Environ Microbiol (2000) 2.50
Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling. Appl Environ Microbiol (2001) 2.41
Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Appl Environ Microbiol (2002) 2.24
Metagenomic characterization of Chesapeake Bay virioplankton. Appl Environ Microbiol (2007) 2.22
Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland. Appl Environ Microbiol (2006) 1.95
Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol (2004) 1.94
Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities. Appl Environ Microbiol (2009) 1.75
Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR. Appl Environ Microbiol (2001) 1.73
Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl Environ Microbiol (2003) 1.45
Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments. Genetics (2006) 1.44
Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking. Appl Environ Microbiol (2000) 1.40
Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes. Appl Environ Microbiol (2000) 1.37
Phylogenetic characterization of a polychlorinated-dioxin- dechlorinating microbial community by use of microcosm studies. Appl Environ Microbiol (2005) 1.33
Characterization of microbial communities found in the human vagina by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Appl Environ Microbiol (2005) 1.29
16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl Environ Microbiol (2001) 1.28
Development of a prokaryotic universal primer for simultaneous analysis of Bacteria and Archaea using next-generation sequencing. PLoS One (2014) 1.24
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Improved assessment of denitrifying, N2-fixing, and total-community bacteria by terminal restriction fragment length polymorphism analysis using multiple restriction enzymes. Appl Environ Microbiol (2005) 1.21
Relative abundances of proteobacterial membrane-bound and periplasmic nitrate reductases in selected environments. Appl Environ Microbiol (2007) 1.21
Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons. Microb Ecol (2006) 1.16
Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512. J Bacteriol (2012) 1.14
High abundance of ammonia-oxidizing Archaea in coastal waters, determined using a modified DNA extraction method. Appl Environ Microbiol (2010) 1.12
Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake estuaries. Appl Environ Microbiol (2007) 1.11
Comparison of ileum microflora of pigs fed corn-, wheat-, or barley-based diets by chaperonin-60 sequencing and quantitative PCR. Appl Environ Microbiol (2005) 1.10
Comparison of free-living and particle-associated bacterial communities in a coastal lagoon. Microb Ecol (2003) 1.05
Coamplification of eukaryotic DNA with 16S rRNA gene-based PCR primers: possible consequences for population fingerprinting of complex microbial communities. Curr Microbiol (2008) 1.03
Intra-genomic variation in the ribosomal repeats of nematodes. PLoS One (2013) 1.02
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Picoeukaryotic sequences in the Sargasso sea metagenome. Genome Biol (2008) 0.99
Diversity and distribution of ecotypes of the aerobic anoxygenic phototrophy gene pufM in the Delaware estuary. Appl Environ Microbiol (2008) 0.97
Identification and quantification of methanogenic Archaea in adult chicken ceca. Appl Environ Microbiol (2006) 0.95
Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology. Genome Announc (2014) 0.94
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Successional changes in the chicken cecal microbiome during 42 days of growth are independent of organic acid feed additives. BMC Vet Res (2014) 0.88
Differential real-time PCR assay for enumeration of lactic acid bacteria in wine. Appl Environ Microbiol (2005) 0.88
Application of sequence-dependent electrophoresis fingerprinting in exploring biodiversity and population dynamics of human intestinal microbiota: what can be revealed? Interdiscip Perspect Infect Dis (2008) 0.87
Agreement between amoA gene-specific quantitative PCR and fluorescence in situ hybridization in the measurement of ammonia-oxidizing bacteria in activated sludge. Appl Environ Microbiol (2014) 0.85
Quantification of nitrogen reductase and nitrite reductase genes in soil of thinned and clear-cut Douglas-fir stands by using real-time PCR. Appl Environ Microbiol (2010) 0.85
Soil bacterial and fungal community structure across a range of unimproved and semi-improved upland grasslands. Microb Ecol (2005) 0.84
Genomes of two new ammonia-oxidizing archaea enriched from deep marine sediments. PLoS One (2014) 0.84
Sensitive determination of microbial growth by nucleic acid staining in aqueous suspension. Appl Environ Microbiol (2006) 0.83
Absence of Spiroplasma or other bacterial 16s rRNA genes in brain tissue of hamsters with scrapie. J Clin Microbiol (2006) 0.82
Composition of the phyllospheric microbial populations on vegetable plants with different glucosinolate and carotenoid compositions. Microb Ecol (2008) 0.82
Variable copy number, intra-genomic heterogeneities and lateral transfers of the 16S rRNA gene in Pseudomonas. PLoS One (2012) 0.82
Soil moisture and pH control relative contributions of fungi and bacteria to N2O production. Microb Ecol (2014) 0.81
Development of a real-time qPCR method for detection and enumeration of Mycobacterium spp. in surface water. Appl Environ Microbiol (2010) 0.81
Functional and genomic analyses of alpha-solenoid proteins. PLoS One (2013) 0.81
Use of PCR-DGGE Based Molecular Methods to Analyse Microbial Community Diversity and Stability during the Thermophilic Stages of an ATAD Wastewater Sludge Treatment Process as an Aid to Performance Monitoring. ISRN Biotechnol (2013) 0.80
Quantification of burkholderia coxL genes in Hawaiian volcanic deposits. Appl Environ Microbiol (2010) 0.80
An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages. PLoS One (2015) 0.79
Mycobacteria in terrestrial small mammals on cattle farms in Tanzania. Vet Med Int (2011) 0.79
Effects of age and region on fecal microflora in elderly subjects living in Bama, Guangxi, China. Curr Microbiol (2010) 0.79
Quantitative PCR enumeration of total/toxic Planktothrix rubescens and total cyanobacteria in preserved DNA isolated from lake sediments. Appl Environ Microbiol (2011) 0.79
Systems biology perspectives on minimal and simpler cells. Microbiol Mol Biol Rev (2014) 0.78
Microbial diversity in a submarine carbonate edifice from the serpentinizing hydrothermal system of the Prony Bay (New Caledonia) over a 6-year period. Front Microbiol (2015) 0.78
atpE gene as a new useful specific molecular target to quantify Mycobacterium in environmental samples. BMC Microbiol (2013) 0.77
Influence of season and plant species on the abundance and diversity of sulfate reducing bacteria and ammonia oxidizing bacteria in constructed wetland microcosms. Microb Ecol (2012) 0.77
Molecular techniques in the biotechnological fight against halogenated compounds in anoxic environments. Microb Biotechnol (2011) 0.77
Investigating bacterial populations in styrene-degrading biofilters by 16S rDNA tag pyrosequencing. Appl Microbiol Biotechnol (2014) 0.77
Characterization of persistent virus-like particles in two acetate-fed methanogenic reactors. PLoS One (2013) 0.76
Vertical Distribution of Soil Denitrifying Communities in a Wet Sclerophyll Forest under Long-Term Repeated Burning. Microb Ecol (2015) 0.76
Impact of treatment strategies on cephalosporin and tetracycline resistance gene quantities in the bovine fecal metagenome. Sci Rep (2014) 0.75
Development of a Lactobacillus specific T-RFLP method to determine lactobacilli diversity in complex samples. J Microbiol Methods (2012) 0.75
Interaction of Vibrio spp. with the Inner Surface of the Digestive Tract of Penaeus monodon. PLoS One (2015) 0.75
Tree Plantation Systems Influence Nitrogen Retention and the Abundance of Nitrogen Functional Genes in the Solomon Islands. Front Microbiol (2015) 0.75
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