Published in Annu Rev Biochem on January 01, 1999
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RNA tertiary interactions in the large ribosomal subunit: the A-minor motif. Proc Natl Acad Sci U S A (2001) 6.58
The non-Watson-Crick base pairs and their associated isostericity matrices. Nucleic Acids Res (2002) 5.35
The RNA Ontology Consortium: an open invitation to the RNA community. RNA (2006) 3.60
Topology of three-way junctions in folded RNAs. RNA (2006) 3.14
Atomic accuracy in predicting and designing noncanonical RNA structure. Nat Methods (2010) 3.07
SCOR: a Structural Classification of RNA database. Nucleic Acids Res (2002) 2.79
A computational approach to identify genes for functional RNAs in genomic sequences. Nucleic Acids Res (2001) 2.28
Crystal structure of a bacterial ribonuclease P RNA. Proc Natl Acad Sci U S A (2005) 2.01
RNA transport and local control of translation. Annu Rev Cell Dev Biol (2005) 1.96
NCIR: a database of non-canonical interactions in known RNA structures. Nucleic Acids Res (2002) 1.83
Impact of 2'-hydroxyl sampling on the conformational properties of RNA: update of the CHARMM all-atom additive force field for RNA. J Comput Chem (2011) 1.81
A potential RNA drug target in the hepatitis C virus internal ribosomal entry site. RNA (2000) 1.75
The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery. Nucleic Acids Res (2004) 1.70
Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design. Nucleic Acids Res (2003) 1.63
The common and the distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure. Nucleic Acids Res (2003) 1.55
Effects of magnesium ions on the stabilization of RNA oligomers of defined structures. RNA (2002) 1.49
The interaction networks of structured RNAs. Nucleic Acids Res (2006) 1.45
Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns. Nucleic Acids Res (2004) 1.43
The crystal structure of a 26-nucleotide RNA containing a hook-turn. RNA (2003) 1.42
The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res (2006) 1.37
On the occurrence of the T-loop RNA folding motif in large RNA molecules. RNA (2003) 1.37
Repression and derepression of minus-strand synthesis in a plus-strand RNA virus replicon. J Virol (2004) 1.32
A switch in time: detailing the life of a riboswitch. Biochim Biophys Acta (2009) 1.29
Representation, searching and discovery of patterns of bases in complex RNA structures. J Comput Aided Mol Des (2003) 1.27
Annotation of tertiary interactions in RNA structures reveals variations and correlations. RNA (2008) 1.21
Analysis and classification of RNA tertiary structures. RNA (2008) 1.20
Hinge stiffness is a barrier to RNA folding. J Mol Biol (2008) 1.17
Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings. J Biomol NMR (2006) 1.16
Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker. Biochemistry (2006) 1.15
Statistical analysis of RNA backbone. IEEE/ACM Trans Comput Biol Bioinform (2006) 1.09
Unusual DNA duplex and hairpin motifs. Nucleic Acids Res (2003) 1.08
Atomic model of the Thermus thermophilus 70S ribosome developed in silico. Biophys J (2004) 1.07
Solution structure of an informationally complex high-affinity RNA aptamer to GTP. RNA (2006) 1.06
Single nucleotide RNA choreography. Nucleic Acids Res (2006) 1.06
The human mitochondrial tRNAMet: structure/function relationship of a unique modification in the decoding of unconventional codons. J Mol Biol (2010) 1.03
Functional analysis of RNA structures present at the 3' extremity of the murine norovirus genome: the variable polypyrimidine tract plays a role in viral virulence. J Virol (2010) 1.03
RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment. Nucleic Acids Res (2010) 1.01
Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complex. Biophys J (2004) 1.00
Solution structure of RNase P RNA. RNA (2011) 0.99
Structure and function of the T-loop structural motif in noncoding RNAs. Wiley Interdiscip Rev RNA (2013) 0.99
Automated motif extraction and classification in RNA tertiary structures. RNA (2008) 0.98
The GANC tetraloop: a novel motif in the group IIC intron structure. J Mol Biol (2008) 0.97
A hypervariable region within the 3' cis-acting element of the murine coronavirus genome is nonessential for RNA synthesis but affects pathogenesis. J Virol (2006) 0.96
Predicting and modeling RNA architecture. Cold Spring Harb Perspect Biol (2011) 0.95
Conformational transitions in RNA single uridine and adenosine bulge structures: a molecular dynamics free energy simulation study. Biophys J (2006) 0.94
G-ribo: a new structural motif in ribosomal RNA. RNA (2007) 0.94
The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex. Nucleic Acids Res (2010) 0.94
Probing the structural hierarchy and energy landscape of an RNA T-loop hairpin. Nucleic Acids Res (2007) 0.93
DSSR: an integrated software tool for dissecting the spatial structure of RNA. Nucleic Acids Res (2015) 0.92
Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression. RNA (2002) 0.90
Structure of the K-turn U4 RNA: a combined NMR and SANS study. Nucleic Acids Res (2010) 0.89
The box C/D sRNP dimeric architecture is conserved across domain Archaea. RNA (2012) 0.89
tRNA recognition by tRNA-guanine transglycosylase from Escherichia coli: the role of U33 in U-G-U sequence recognition. RNA (2001) 0.86
The role of nucleobase interactions in RNA structure and dynamics. Nucleic Acids Res (2014) 0.86
HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Res (2001) 0.86
Novel base triples in RNA structures revealed by graph theoretical searching methods. BMC Bioinformatics (2011) 0.86
Stacking in RNA: NMR of Four Tetramers Benchmark Molecular Dynamics. J Chem Theory Comput (2015) 0.85
Informatics challenges in structured RNA. Brief Bioinform (2007) 0.85
Structural signatures of antibiotic binding sites on the ribosome. Nucleic Acids Res (2010) 0.85
RNA molecules with structure dependent functions are uniquely folded. Nucleic Acids Res (2002) 0.84
The adenosine wedge: a new structural motif in ribosomal RNA. RNA (2009) 0.83
Binding of kinetically inert metal ions to RNA: the case of platinum(II). Met Ions Life Sci (2011) 0.81
HD-RNAS: An Automated Hierarchical Database of RNA Structures. Front Genet (2012) 0.81
Visualizing the formation of an RNA folding intermediate through a fast highly modular secondary structure switch. Nat Commun (2016) 0.80
Single-molecule investigations of RNA dissociation. Biophys J (2004) 0.80
Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex. Nucleic Acids Res (2005) 0.80
The mysterious RAMP proteins and their roles in small RNA-based immunity. Protein Sci (2012) 0.80
NMR structure of a ribosomal RNA hairpin containing a conserved CUCAA pentaloop. Nucleic Acids Res (2001) 0.80
The triplex-hairpin transition in cytosine-rich DNA. Biophys J (2004) 0.79
An in vitro-selected RNA receptor for the GAAC loop: modular receptor for non-GNRA-type tetraloop. Nucleic Acids Res (2013) 0.78
RNAMotifScanX: a graph alignment approach for RNA structural motif identification. RNA (2015) 0.77
Determination of the secondary structure of group II bulge loops using the fluorescent probe 2-aminopurine. RNA (2015) 0.77
Nonparametric clustering for studying RNA conformations. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.76
OLE RNA protects extremophilic bacteria from alcohol toxicity. Nucleic Acids Res (2012) 0.75
RNA structural motif recognition based on least-squares distance. RNA (2013) 0.75
RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure. PLoS One (2015) 0.75
InterRNA: a database of base interactions in RNA structures. Nucleic Acids Res (2015) 0.75
Recurrent RNA motifs as probes for studying RNA-protein interactions in the ribosome. Nucleic Acids Res (2010) 0.75
Effect of single-residue bulges on RNA double-helical structures: crystallographic database analysis and molecular dynamics simulation studies. J Mol Model (2017) 0.75
Novel cross-strand three-purine stack of the highly conserved 5'-GA/AAG-5' internal loop at the 3'-end termini of Parvovirus genomes. J Biomol NMR (2001) 0.75
Nuclear Magnetic Resonance Structure of an 8 × 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions. Biochemistry (2017) 0.75