Published in Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics on March 01, 2000
From sequences to shapes and back: a case study in RNA secondary structures. Proc Biol Sci (1994) 6.01
Smoothness within ruggedness: the role of neutrality in adaptation. Proc Natl Acad Sci U S A (1996) 3.67
Automatic detection of conserved RNA structure elements in complete RNA virus genomes. Nucleic Acids Res (1998) 3.18
Spontaneous and engineered deletions in the 3' noncoding region of tick-borne encephalitis virus: construction of highly attenuated mutants of a flavivirus. J Virol (1998) 2.11
Statistics of RNA secondary structures. Biopolymers (1993) 2.06
Prediction of locally stable RNA secondary structures for genome-wide surveys. Bioinformatics (2004) 1.93
Generic properties of combinatory maps: neutral networks of RNA secondary structures. Bull Math Biol (1997) 1.85
Design of multistable RNA molecules. RNA (2001) 1.65
Secondary structure of the 3'-noncoding region of flavivirus genomes: comparative analysis of base pairing probabilities. RNA (1997) 1.62
Conserved RNA secondary structures in Picornaviridae genomes. Nucleic Acids Res (2001) 1.62
Automatic detection of conserved base pairing patterns in RNA virus genomes. Comput Chem (1999) 1.53
RNA multi-structure landscapes. A study based on temperature dependent partition functions. Eur Biophys J (1993) 1.51
The topology of the possible: formal spaces underlying patterns of evolutionary change. J Theor Biol (2001) 1.50
Viral RNA and evolved mutational robustness. J Exp Zool (1999) 1.38
Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force. Fold Des (1997) 1.29
Sequence assembly. Comput Biol Chem (2008) 1.23
Stochastic pairwise alignments. Bioinformatics (2002) 1.22
Conserved RNA secondary structures in viral genomes: a survey. Bioinformatics (2004) 1.14
Landscapes: complex optimization problems and biopolymer structures. Comput Chem (1994) 1.10
Identification and classification of small RNAs in transcriptome sequence data. Pac Symp Biocomput (2010) 1.08
Prediction of RNA base pairing probabilities on massively parallel computers. J Comput Biol (2000) 1.07
The evolution of diversity in replicator networks. J Theor Biol (1998) 1.03
RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties. Bull Math Biol (1999) 0.99
Density of states, metastable states, and saddle points exploring the energy landscape of an RNA molecule. Proc Int Conf Intell Syst Mol Biol (1997) 0.96
Statistics of RNA melting kinetics. Eur Biophys J (1994) 0.92
Dynamics of autocatalytic replicator networks based on higher-order ligation reactions. Bull Math Biol (2000) 0.89
Exploring protein sequence space using knowledge-based potentials. J Theor Biol (2001) 0.88
Base pairing probabilities in a complete HIV-1 RNA. J Comput Biol (1996) 0.87
RNA structures and folding: from conventional to new issues in structure predictions. Curr Opin Struct Biol (1997) 0.86
Soluble model for the accumulation of mutations in asexual populations. Phys Rev Lett (2001) 0.84
Why some fitness landscapes are fractal. J Theor Biol (1993) 0.83
Selection dynamics in autocatalytic systems: templates replicating through binary ligation. Bull Math Biol (1998) 0.82
Three different premature stop codons lead to skipping of exon 7 in neurofibromatosis type I patients. Hum Mutat (2000) 0.80
Approximate scaling properties of RNA free energy landscapes. J Theor Biol (1996) 0.80
Nonequilibrium phase transitions in a model for the origin of life. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.79
Complementarity and diversity in a soluble model ecosystem. Phys Rev Lett (2002) 0.79
Hidden treasures in unspliced EST data. Theory Biosci (2012) 0.78
Bio-molecular shapes and algebraic structures. Comput Chem (1996) 0.78
Phase transitions in a model for the formation of herpes simplex ulcers. Phys Rev E Stat Nonlin Soft Matter Phys (2001) 0.75
Autocatalytic replication in a CSTR and constant organization. J Math Biol (1999) 0.75
Extinctions in the random replicator model. Phys Rev E Stat Nonlin Soft Matter Phys (2001) 0.75
Hamming chromatography. Mol Divers (1996) 0.75
Group selection models in prebiotic evolution. Phys Rev E Stat Nonlin Soft Matter Phys (2000) 0.75
RNA shape space topology. Artif Life (2000) 0.75
Autocatalytic networks with intermediates. I: Irreversible reactions. Math Biosci (1997) 0.75
Evolution of protein synthesis in a lattice model of replicators. Phys Rev Lett (2002) 0.75