Published in Trends Ecol Evol on January 01, 2001
Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups. Am J Hum Genet (2002) 6.02
Prokaryotic evolution and the tree of life are two different things. Biol Direct (2009) 2.17
Things fall apart: biological species form unconnected parsimony networks. Biol Lett (2007) 1.88
Bounding the number of hybridisation events for a consistent evolutionary history. J Math Biol (2005) 1.80
Three roads diverged? Routes to phylogeographic inference. Trends Ecol Evol (2010) 1.74
Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data. Infect Genet Evol (2005) 1.72
Mitochondrial cytochrome B DNA variation in the high-fecundity atlantic cod: trans-atlantic clines and shallow gene genealogy. Genetics (2004) 1.53
Domestication of a Mesoamerican cultivated fruit tree, Spondias purpurea. Proc Natl Acad Sci U S A (2005) 1.51
Crossing the impassable: genetic connections in 20 reef fishes across the eastern Pacific barrier. Proc Biol Sci (2006) 1.47
Influenza A H5N1 immigration is filtered out at some international borders. PLoS One (2008) 1.46
A comparison of phylogenetic network methods using computer simulation. PLoS One (2008) 1.40
Characterization of the follicular dendritic cell reservoir of human immunodeficiency virus type 1. J Virol (2008) 1.40
Differential shuffling of native genetic diversity across introduced regions in a brown alga: aquaculture vs. maritime traffic effects. Proc Natl Acad Sci U S A (2005) 1.38
A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data. PLoS Comput Biol (2012) 1.38
Under the genomic radar: the stealth model of Alu amplification. Genome Res (2005) 1.31
Extended Newick: it is time for a standard representation of phylogenetic networks. BMC Bioinformatics (2008) 1.29
Under the volcano: phylogeography and evolution of the cave-dwelling Palmorchestia hypogaea (Amphipoda, Crustacea) at La Palma (Canary Islands). BMC Biol (2008) 1.26
Ancestral European roots of Helicobacter pylori in India. BMC Genomics (2007) 1.26
Effects of Pleistocene glaciations and rivers on the population structure of Bornean orangutans (Pongo pygmaeus). Proc Natl Acad Sci U S A (2010) 1.21
Homologous recombination in negative sense RNA viruses. Viruses (2011) 1.19
Spectrum of genetic diversity and networks of clonal organisms. J R Soc Interface (2007) 1.19
A rapid fish radiation associated with the last sea-level changes in southern Brazil: the silverside Odontesthes perugiae complex. Proc Biol Sci (2002) 1.18
Phylogeographic history and gene flow among giant Galápagos tortoises on southern Isabela Island. Genetics (2005) 1.18
A decomposition theory for phylogenetic networks and incompatible characters. J Comput Biol (2007) 1.17
Molecular population genetics and phylogeography of the Chagas disease vector Triatoma infestans in South America. J Med Entomol (2009) 1.15
Integrating paleoecology and genetics of bird populations in two sky island archipelagos. BMC Biol (2008) 1.15
Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times. BMC Biol (2010) 1.14
Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes. BMC Bioinformatics (2008) 1.14
Worldwide distribution of the MYH9 kidney disease susceptibility alleles and haplotypes: evidence of historical selection in Africa. PLoS One (2010) 1.14
Tracing the origins of rescued chimpanzees reveals widespread chimpanzee hunting in Cameroon. BMC Ecol (2010) 1.13
The structure of diversity within New World mitochondrial DNA haplogroups: implications for the prehistory of North America. Am J Hum Genet (2002) 1.12
A 2000 km genetic wake yields evidence for northern glacial refugia and hybrid zone movement in a pair of songbirds. Proc Biol Sci (2009) 1.09
Vertical transmission as the key to the colonization of Madagascar by fungus-growing termites? Proc Biol Sci (2009) 1.07
An exploratory algorithm to identify intra-host recombinant viral sequences. Mol Phylogenet Evol (2008) 1.07
Influence of two Wolbachia strains on population structure of East African Drosophila simulans. Genetics (2003) 1.03
Phylogeography of the tree Hymenaea stigonocarpa (Fabaceae: Caesalpinioideae) and the influence of quaternary climate changes in the Brazilian cerrado. Ann Bot (2007) 1.03
High levels of genetic differentiation between Ugandan Glossina fuscipes fuscipes populations separated by Lake Kyoga. PLoS Negl Trop Dis (2008) 1.03
Non-equilibrium estimates of gene flow inferred from nuclear genealogies suggest that Iberian and North African wall lizards (Podarcis spp.) are an assemblage of incipient species. BMC Evol Biol (2008) 1.02
Gene flow and the genealogical history of Heliconius heurippa. BMC Evol Biol (2008) 1.02
Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton. BMC Evol Biol (2010) 1.02
Molecular biogeography of red deer Cervus elaphus from eastern Europe: insights from mitochondrial DNA sequences. Acta Theriol (Warsz) (2010) 1.00
Ancient divergence of a complex family of immune-type receptor genes. Immunogenetics (2006) 1.00
Building the sugarcane genome for biotechnology and identifying evolutionary trends. BMC Genomics (2014) 1.00
A perl package and an alignment tool for phylogenetic networks. BMC Bioinformatics (2008) 0.99
Species discrimination and phylogenetic inference of 17 Chinese Leishmania isolates based on internal transcribed spacer 1 (ITS1) sequences. Parasitol Res (2010) 0.99
Genotyping and coalescent phylogenetic analysis of Pneumocystis jiroveci from South Africa. J Clin Microbiol (2004) 0.98
Phylogeography of the thermophilic cyanobacterium Mastigocladus laminosus. Appl Environ Microbiol (2007) 0.98
Foraging segregation and genetic divergence between geographically proximate colonies of a highly mobile seabird. Oecologia (2011) 0.97
Extended IL10 haplotypes and their association with HIV progression to AIDS. Genes Immun (2009) 0.97
Glacial history of a modern invader: phylogeography and species distribution modelling of the Asian tiger mosquito Aedes albopictus. PLoS One (2012) 0.97
Genetic diversity in Cypripedium calceolus (Orchidaceae) with a focus on north-western Europe, as revealed by plastid DNA length polymorphisms. Ann Bot (2009) 0.96
Characterization of phylogenetic networks with NetTest. BMC Bioinformatics (2010) 0.95
Population structure analyses and demographic history of the malaria vector Anopheles albimanus from the Caribbean and the Pacific regions of Colombia. Malar J (2009) 0.95
A novel exploratory method for visual recombination detection. Genome Biol (2003) 0.94
GENETIC DIVERSITY WITHIN THE SOUTHERN PLAINS WOODRAT (NEOTOMA MICROPUS) IN SOUTHERN TEXAS. J Mammal (2005) 0.94
Patterns of intraspecific DNA variation in the Daphnia nuclear genome. Genetics (2009) 0.94
Historical biogeography of the land snail Cornu aspersum: a new scenario inferred from haplotype distribution in the Western Mediterranean basin. BMC Evol Biol (2010) 0.93
Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle. Proc Natl Acad Sci U S A (2009) 0.93
Phylogeography of Quercus variabilis based on chloroplast DNA sequence in East Asia: multiple glacial refugia and Mainland-migrated island populations. PLoS One (2012) 0.92
One or three species in Megadenia (Brassicaceae): insight from molecular studies. Genetica (2014) 0.91
Phylogeography of Pinus armandii and its relatives: heterogeneous contributions of geography and climate changes to the genetic differentiation and diversification of Chinese white pines. PLoS One (2014) 0.91
A continental-wide perspective: the genepool of nuclear encoded ribosomal DNA and single-copy gene sequences in North American Boechera (Brassicaceae). PLoS One (2012) 0.90
Species delimitation and phylogenetic relationships of Chinese Leishmania isolates reexamined using kinetoplast cytochrome oxidase II gene sequences. Parasitol Res (2011) 0.89
The emergence of resistance to the benzimidazole anthlemintics in parasitic nematodes of livestock is characterised by multiple independent hard and soft selective sweeps. PLoS Negl Trop Dis (2015) 0.89
DNA fingerprinting in botany: past, present, future. Investig Genet (2014) 0.89
Complex phylogeographic history of central African forest elephants and its implications for taxonomy. BMC Evol Biol (2007) 0.87
Evidence for panmixia despite barriers to gene flow in the southern African endemic, Caffrogobius caffer (Teleostei: Gobiidae). BMC Evol Biol (2008) 0.87
Phylogeography and population structure of the grape powdery mildew fungus, Erysiphe necator, from diverse Vitis species. BMC Evol Biol (2010) 0.86
Phylogeography of the Solanaceae-infecting Basidiomycota fungus Rhizoctonia solani AG-3 based on sequence analysis of two nuclear DNA loci. BMC Evol Biol (2007) 0.86
Genetic structure of Japanese scallop population in Hokkaido, analyzed by mitochondrial haplotype distribution. Mar Biotechnol (NY) (2005) 0.86
Phylogeographical analysis of mtDNA data indicates postglacial expansion from multiple glacial refugia in woodland caribou (Rangifer tarandus caribou). PLoS One (2012) 0.86
Recent range-wide demographic expansion in a Taiwan endemic montane bird, Steere's Liocichla (Liocichla steerii). BMC Evol Biol (2010) 0.85
Distinguishing importation from diversification of quinolone-resistant Neisseria gonorrhoeae by molecular evolutionary analysis. BMC Evol Biol (2007) 0.85
Characterization of reticulate networks based on the coalescent with recombination. Mol Biol Evol (2008) 0.84
Phylogeographic analysis reveals significant spatial genetic structure of Incarvillea sinensis as a product of mountain building. BMC Plant Biol (2012) 0.84
Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB. PLoS One (2014) 0.84
Recent geological events and intrinsic behavior influence the population genetic structure of the chiru and tibetan gazelle on the tibetan plateau. PLoS One (2013) 0.84
Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera. BMC Evol Biol (2007) 0.84
The population genetics of wild chimpanzees in Cameroon and Nigeria suggests a positive role for selection in the evolution of chimpanzee subspecies. BMC Evol Biol (2015) 0.84
Extensive mitochondrial introgression in North American Great Black-backed Gulls (Larus marinus) from the American Herring Gull (Larus smithsonianus) with little nuclear DNA impact. Heredity (Edinb) (2013) 0.83
Diversity of oligotrichia and choreotrichia ciliates in coastal marine sediments and in overlying plankton. Appl Environ Microbiol (2010) 0.83
Evolution of the bovine TLR gene family and member associations with Mycobacterium avium subspecies paratuberculosis infection. PLoS One (2011) 0.83
Population genetics of two asexually and sexually reproducing psocids species inferred by the analysis of mitochondrial and nuclear DNA sequences. PLoS One (2012) 0.83
Intraspecific mitochondrial DNA variation of Fasciola hepatica eggs from sheep with different level of anthelmintic resistance. Parasitol Res (2014) 0.83
High chloroplast haplotype diversity in the endemic legume Oxytropis chankaensis may result from independent polyploidization events. Genetica (2010) 0.82
Discriminating micropathogen lineages and their reticulate evolution through graph theory-based network analysis: the case of Trypanosoma cruzi, the agent of Chagas disease. PLoS One (2014) 0.82
Genetic signature of rapid IHHNV (infectious hypodermal and hematopoietic necrosis virus) expansion in wild Penaeus shrimp populations. PLoS One (2010) 0.82
Phylogeography of Pinus subsection Australes in the Caribbean Basin. Ann Bot (2010) 0.82
Codivergence and multiple host species use by fig wasp populations of the Ficus pollination mutualism. BMC Evol Biol (2012) 0.82
Reconstruction of microsatellite mutation history reveals a strong and consistent deletion bias in invasive clonal snails, Potamopyrgus antipodarum. Genetics (2002) 0.82
Towards a model of postglacial biogeography in shallow marine species along the Patagonian Province: lessons from the limpet Nacella magellanica (Gmelin, 1791). BMC Evol Biol (2012) 0.82
Hiding deep in the trees: discovery of divergent mitochondrial lineages in Malagasy chameleons of the Calumma nasutum group. Ecol Evol (2012) 0.82
Integrative phylogeography of Calotriton newts (Amphibia, Salamandridae), with special remarks on the conservation of the endangered Montseny brook newt (Calotriton arnoldi). PLoS One (2013) 0.81
Inference of population history by coupling exploratory and model-driven phylogeographic analyses. Int J Mol Sci (2010) 0.81
Glaciation effects on the phylogeographic structure of Oligoryzomys longicaudatus (Rodentia: Sigmodontinae) in the southern Andes. PLoS One (2012) 0.81
Signals of demographic expansion in Drosophila virilis. BMC Evol Biol (2008) 0.81
Origin, divergence, and phylogeny of asexual Epichloë endophyte in Elymus species from western China. PLoS One (2015) 0.80
Population structure and phylogeography reveal pathways of colonization by a migratory marine reptile (Chelonia mydas) in the central and eastern Pacific. Ecol Evol (2014) 0.80
Genetic diversity and connectivity remain high in Holothuria polii (Delle Chiaje 1823) across a coastal lagoon-open sea environmental gradient. Genetica (2010) 0.80
Metschnikowia Species Share a Pool of Diverse rRNA Genes Differing in Regions That Determine Hairpin-Loop Structures and Evolve by Reticulation. PLoS One (2013) 0.80
Considering evolutionary processes in conservation biology. Trends Ecol Evol (2000) 4.67
Mitochondrial DNA phylogeography and population history of the grey wolf canis lupus Mol Ecol (1999) 2.63
Discriminant validity of the adult attachment interview. Child Dev (1996) 1.07
Defect relaxation in amorphous silicon: Stretched exponentials, the Meyer-Neldel rule, and the Staebler-Wronski effect. Phys Rev B Condens Matter (1991) 0.79