Optimizing reduced-space sequence analysis.

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol (2010) 26.41

A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet (2009) 17.80

A linear memory algorithm for Baum-Welch training. BMC Bioinformatics (2005) 1.17

Genotype Imputation with Millions of Reference Samples. Am J Hum Genet (2016) 1.15

Memory-efficient dynamic programming backtrace and pairwise local sequence alignment. Bioinformatics (2008) 0.96

Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory. BMC Bioinformatics (2008) 0.88

Clustering ionic flow blockade toggles with a mixture of HMMs. BMC Bioinformatics (2008) 0.78

Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training. Algorithms Mol Biol (2010) 0.75

Hidden Markov models for detecting remote protein homologies. Bioinformatics (1998) 21.29

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Comput Appl Biosci (1996) 19.74

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol (2001) 15.97

Using Dirichlet mixture priors to derive hidden Markov models for protein families. Proc Int Conf Intell Syst Mol Biol (1993) 10.73

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J Mol Biol (1998) 9.09

Stochastic context-free grammars for tRNA modeling. Nucleic Acids Res (1994) 6.29

RNA modeling using Gibbs sampling and stochastic context free grammars. Proc Int Conf Intell Syst Mol Biol (1994) 4.32

Predicting protein structure using hidden Markov models. Proteins (1997) 2.20

What is the value added by human intervention in protein structure prediction? Proteins (2001) 1.97

Predicting protein structure using only sequence information. Proteins (1999) 1.77

Reduced space sequence alignment. Comput Appl Biosci (1997) 1.75

Scoring hidden Markov models. Comput Appl Biosci (1997) 1.36

MUC1 and other sialoglycoconjugates inhibit adenovirus-mediated gene transfer to epithelial cells. Am J Respir Cell Mol Biol (1997) 1.30

Statistical modeling, phylogenetic analysis and structure prediction of a protein splicing domain common to inteins and hedgehog proteins. J Comput Biol (1997) 1.25

Reduced space hidden Markov model training. Bioinformatics (1998) 1.04

Weighting hidden Markov models for maximum discrimination. Bioinformatics (1998) 0.87

Plasma fibronectin levels and coronary artery disease. J Thromb Haemost (2007) 0.86

The effects of sialoglycoconjugates on adenovirus-mediated gene transfer to epithelial cells in vitro and in human airway xenografts. Chest (1997) 0.77

Parallel sequence alignment in limited space. Proc Int Conf Intell Syst Mol Biol (1995) 0.75

Energy function-based approaches to graph coloring. IEEE Trans Neural Netw (2002) 0.75

Molecular fingerprinting on the SIMD parallel processor Kestrel. Pac Symp Biocomput (2001) 0.75

Sequence analysis with the Kestrel SIMD parallel processor. Pac Symp Biocomput (2001) 0.75