Estimating the influence of selection on the variable amino acid sites of the cytochrome B protein functional domains.

A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus. Mol Biol Evol (2008) 1.96

Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data. Infect Genet Evol (2005) 1.72

The adaptive evolution of the mammalian mitochondrial genome. BMC Genomics (2008) 1.69

Widespread adaptive evolution in the human immunodeficiency virus type 1 genome. J Mol Evol (2003) 1.49

Positive selection on the killer whale mitogenome. Biol Lett (2010) 1.25

Rapid nonsynonymous evolution of the iron-sulfur protein in anthropoid primates. J Bioenerg Biomembr (2005) 0.94

Extreme primary and secondary protein structure variability in the chimeric male-transmitted cytochrome c oxidase subunit II protein in freshwater mussels: evidence for an elevated amino acid substitution rate in the face of domain-specific purifying selection. BMC Evol Biol (2008) 0.92

Genome-wide survey of natural selection on functional, structural, and network properties of polymorphic sites in Saccharomyces paradoxus. Mol Biol Evol (2011) 0.92

The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level. BMC Evol Biol (2007) 0.90

Comparative evolutionary genomics of the HADH2 gene encoding Abeta-binding alcohol dehydrogenase/17beta-hydroxysteroid dehydrogenase type 10 (ABAD/HSD10). BMC Genomics (2006) 0.87

Evolutionary pressure on mitochondrial cytochrome b is consistent with a role of CytbI7T affecting longevity during caloric restriction. PLoS One (2009) 0.86

Divergent evolution and molecular adaptation in the Drosophila odorant-binding protein family: inferences from sequence variation at the OS-E and OS-F genes. BMC Evol Biol (2008) 0.86

FoxO gene family evolution in vertebrates. BMC Evol Biol (2009) 0.85

Distinguishing importation from diversification of quinolone-resistant Neisseria gonorrhoeae by molecular evolutionary analysis. BMC Evol Biol (2007) 0.85

Detecting clusters of mutations. PLoS One (2008) 0.84

Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment. Genome Biol Evol (2014) 0.82

Characterizing molecular adaptation: a hierarchical approach to assess the selective influence of amino acid properties. Bioinformatics (2010) 0.81

Molecular Evolution and Functional Divergence of Trace Amine-Associated Receptors. PLoS One (2016) 0.81

IMPACT_S: integrated multiprogram platform to analyze and combine tests of selection. PLoS One (2014) 0.79

Evidence for positive selection in the gene fruitless in Anastrepha fruit flies. BMC Evol Biol (2010) 0.79

Phylogenetics applied to genotype/phenotype association and selection analyses with sequence data from angptl4 in humans. Int J Mol Sci (2010) 0.78

Molecular evolution of anthocyanin pigmentation genes following losses of flower color. BMC Evol Biol (2016) 0.77

New methods for inferring population dynamics from microbial sequences. Infect Genet Evol (2006) 0.77

Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life. BMC Evol Biol (2016) 0.77

Physicochemical evolution and molecular adaptation of the cetacean osmoregulation-related gene UT-A2 and implications for functional studies. Sci Rep (2015) 0.76

The uneven rate of the molecular evolution of gene sequences of DNA-Dependent RNA polymerase I of the Genus Lamium L. Int J Mol Sci (2013) 0.76

Directional Darwinian Selection in proteins. BMC Bioinformatics (2013) 0.76

Adaptation of the Mitochondrial Genome in Cephalopods: Enhancing Proton Translocation Channels and the Subunit Interactions. PLoS One (2015) 0.75

Evidence of Positive Selection of Aquaporins Genes from Pontoporia blainvillei during the Evolutionary Process of Cetaceans. PLoS One (2015) 0.75

Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates. PLoS One (2014) 0.75

Bayesian factor models in characterizing molecular adaptation. J Appl Stat (2013) 0.75

Bayesian semiparametric regression models to characterize molecular evolution. BMC Bioinformatics (2012) 0.75

Testing for the Occurrence of Selective Episodes During the Divergence of Otophysan Fishes: Insights from Mitogenomics. J Mol Evol (2017) 0.75

The human retinoblastoma susceptibility gene (RB1): an evolutionary story in primates. Mamm Genome (2017) 0.75

Relative patterns and rates of evolution in heron nuclear and mitochondrial DNA. Mol Biol Evol (2000) 0.90

Stepwise colonization of the Andes by ruddy ducks and the evolution of novel β-globin variants. Mol Ecol (2013) 0.76

Energy spectra of a number of celestial x-ray sources in the energy range from 2 to 60 kiloelectron volts. Science (1966) 0.75