An easy way to include weak alignment constraints into NMR structure calculations.

PubWeight™: 0.98‹?› | Rank: Top 15%

🔗 View Article (PMID 11775744)

Published in J Biomol NMR on November 01, 2001

Authors

H J Sass1, G Musco, S J Stahl, P T Wingfield, S Grzesiek

Author Affiliations

1: Department of Structural Biology, Biozentrum, University of Basel, Switzerland.

Articles citing this

Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data. J Biomol NMR (2008) 1.53

The DNA-binding domain of human PARP-1 interacts with DNA single-strand breaks as a monomer through its second zinc finger. J Mol Biol (2011) 1.38

Measurement of eight scalar and dipolar couplings for methine-methylene pairs in proteins and nucleic acids. J Biomol NMR (2005) 1.35

Structure of the N-terminal region of complement factor H and conformational implications of disease-linked sequence variations. J Biol Chem (2008) 1.16

Paramagnetism-based restraints for Xplor-NIH. J Biomol NMR (2004) 1.15

Structure of the Cyclin T binding domain of Hexim1 and molecular basis for its recognition of P-TEFb. Proc Natl Acad Sci U S A (2007) 1.09

Structural Basis of Detection and Signaling of DNA Single-Strand Breaks by Human PARP-1. Mol Cell (2015) 0.91

Structural basis for antibiotic recognition by the TipA class of multidrug-resistance transcriptional regulators. EMBO J (2003) 0.88

Disruption of helix-capping residues 671 and 674 reveals a role in HIV-1 entry for a specialized hinge segment of the membrane proximal external region of gp41. J Mol Biol (2013) 0.86

Application of correlated residual dipolar couplings to the determination of the molecular alignment tensor magnitude of oriented proteins and nucleic acids. J Biomol NMR (2004) 0.86

Solution structure of the IIAChitobiose-IIBChitobiose complex of the N,N'-diacetylchitobiose branch of the Escherichia coli phosphotransferase system. J Biol Chem (2009) 0.84

Nuclear magnetic resonance solution structure of the peptidoglycan-binding SPOR domain from Escherichia coli DamX: insights into septal localization. Biochemistry (2013) 0.80

Determination of molecular alignment tensors without backbone resonance assignment: Aid to rapid analysis of protein-protein interactions. J Biomol NMR (2003) 0.79

Solution structure of a repeated unit of the ABA-1 nematode polyprotein allergen of Ascaris reveals a novel fold and two discrete lipid-binding sites. PLoS Negl Trop Dis (2011) 0.79

A unifying probabilistic framework for analyzing residual dipolar couplings. J Biomol NMR (2007) 0.78

New opportunities for tensor-free calculations of residual dipolar couplings for the study of protein dynamics. J Biomol NMR (2014) 0.76

Structural basis for PHDVC5HCHNSD1-C2HRNizp1 interaction: implications for Sotos syndrome. Nucleic Acids Res (2016) 0.75

Solution Structure of Domain 1.1 of the σ(A) Factor from Bacillus subtilis is Preformed for Binding to the RNA Polymerase Core. J Biol Chem (2017) 0.75

Articles cited by this

NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR (1995) 93.94

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J Biomol NMR (1996) 29.55

Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. Science (1997) 9.39

Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions. Nat Struct Biol (1998) 4.77

Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution. Proc Natl Acad Sci U S A (1995) 4.20

Order matrix analysis of residual dipolar couplings using singular value decomposition. J Magn Reson (1999) 3.49

Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solution. Nat Struct Biol (1997) 2.51

A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information. J Magn Reson (1998) 2.38

Refined solution structure and backbone dynamics of HIV-1 Nef. Protein Sci (1997) 2.09

A doublet-separated sensitivity-enhanced HSQC for the determination of scalar and dipolar one-bond J-couplings. J Biomol NMR (1999) 1.31

Measurement of dipolar couplings for methylene and methyl sites in weakly oriented macromolecules and their use in structure determination. J Magn Reson (1998) 1.22

A maximum likelihood method for determining D(a)(PQ) and R for sets of dipolar coupling data. J Magn Reson (2001) 0.98

Measurement of dipolar contributions to 1JCH splittings from magnetic-field dependence of J modulation in two-dimensional NMR spectra. J Magn Reson (1997) 0.95

Structural constraints from residual tensorial couplings in high resolution NMR without an explicit term for the alignment tensor. J Biomol NMR (1999) 0.88

Articles by these authors

NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR (1995) 93.94

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G. Science (1991) 6.00

Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta. Biochemistry (1989) 5.30

Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy. Nature (1997) 4.35

Measurement of homo- and heteronuclear J couplings from quantitative J correlation. Methods Enzymol (1994) 3.97

Three-dimensional solution structure of the 44 kDa ectodomain of SIV gp41. EMBO J (1998) 3.77

NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science (1993) 3.74

The CD4 determinant for downregulation by HIV-1 Nef directly binds to Nef. Mapping of the Nef binding surface by NMR. Biochemistry (1996) 3.41

Solution structure of calcium-free calmodulin. Nat Struct Biol (1995) 3.36

Dimorphism of hepatitis B virus capsids is strongly influenced by the C-terminus of the capsid protein. Biochemistry (1996) 3.00

The solution structure of HIV-1 Nef reveals an unexpected fold and permits delineation of the binding surface for the SH3 domain of Hck tyrosine protein kinase. Nat Struct Biol (1996) 2.94

Measurement of HN-H alpha J couplings in calcium-free calmodulin using new 2D and 3D water-flip-back methods. J Biomol NMR (1994) 2.50

Flexibility and function in HIV-1 protease. Nat Struct Biol (1995) 2.49

Analysis of the backbone dynamics of interleukin-1 beta using two-dimensional inverse detected heteronuclear 15N-1H NMR spectroscopy. Biochemistry (1990) 2.36

A theoretical model successfully identifies features of hepatitis B virus capsid assembly. Biochemistry (1999) 2.34

Hepatitis core antigen produced in Escherichia coli: subunit composition, conformational analysis, and in vitro capsid assembly. Biochemistry (1995) 2.26

Refined solution structure and backbone dynamics of HIV-1 Nef. Protein Sci (1997) 2.09

An expanded transcriptional map of T7 bacteriophage. Reading of minor T7 promoter sites in vitro by Escherichia coli RNA polymerase. J Mol Biol (1977) 2.03

Solution NMR of proteins within polyacrylamide gels: diffusional properties and residual alignment by mechanical stress or embedding of oriented purple membranes. J Biomol NMR (2000) 2.01

Kinetics of folding of the all-beta sheet protein interleukin-1 beta. Science (1993) 1.95

Localization of the C terminus of the assembly domain of hepatitis B virus capsid protein: implications for morphogenesis and organization of encapsidated RNA. Proc Natl Acad Sci U S A (1997) 1.90

The crystal structure of the SIV gp41 ectodomain at 1.47 A resolution. J Struct Biol (1999) 1.76

N-terminal methionine-specific peptidase in Salmonella typhimurium. Proc Natl Acad Sci U S A (1987) 1.66

Assignment of the side-chain 1H and 13C resonances of interleukin-1 beta using double- and triple-resonance heteronuclear three-dimensional NMR spectroscopy. Biochemistry (1990) 1.65

Nucleotide sequence of the cloned gene for bacteriophage T7 RNA polymerase. J Mol Biol (1981) 1.62

Hexon-only binding of VP26 reflects differences between the hexon and penton conformations of VP5, the major capsid protein of herpes simplex virus. J Virol (1997) 1.57

Binding of Escherichia coli RNA polymerase to T7 DNA. Displacement of holoenzyme from promoter complexes by heparin. J Biol Chem (1977) 1.57

Extracellular slime associated with Proteus mirabilis during swarming. J Bacteriol (1983) 1.53

Molecular architecture of bacteriophage T4 capsid: vertex structure and bimodal binding of the stabilizing accessory protein, Soc. Virology (2000) 1.53

The solution structure of the first KH domain of FMR1, the protein responsible for the fragile X syndrome. Nat Struct Biol (1997) 1.52

Dependency of delta pH-relaxation across vesicular membranes on the buffering power of bulk solutions and lipids. Biophys J (1986) 1.51

Sequential backbone assignment of isotopically enriched proteins in D2O by deuterium-decoupled HA(CA)N and HA(CACO)N. J Biomol NMR (1995) 1.51

Hepatitis B virus capsid: localization of the putative immunodominant loop (residues 78 to 83) on the capsid surface, and implications for the distinction between c and e-antigens. J Mol Biol (1998) 1.44

Complete resonance assignment for the polypeptide backbone of interleukin 1 beta using three-dimensional heteronuclear NMR spectroscopy. Biochemistry (1990) 1.40

HIV-1 Rev expressed in recombinant Escherichia coli: purification, polymerization, and conformational properties. Biochemistry (1991) 1.38

Filamentous hemagglutinin of Bordetella pertussis. A bacterial adhesin formed as a 50-nm monomeric rigid rod based on a 19-residue repeat motif rich in beta strands and turns. J Mol Biol (1994) 1.38

Biophysical and functional characterization of full-length, recombinant human tissue inhibitor of metalloproteinases-2 (TIMP-2) produced in Escherichia coli. Comparison of wild type and amino-terminal alanine appended variant with implications for the mechanism of TIMP functions. J Biol Chem (1999) 1.35

Proteolytic processing of HIV-1 protease precursor, kinetics and mechanism. J Biol Chem (1999) 1.33

Solution NMR evidence that the HIV-1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272. Biochemistry (1996) 1.32

A doublet-separated sensitivity-enhanced HSQC for the determination of scalar and dipolar one-bond J-couplings. J Biomol NMR (1999) 1.31

Diversity of core antigen epitopes of hepatitis B virus. Proc Natl Acad Sci U S A (2003) 1.30

Characterization of a conformational epitope on hepatitis B virus core antigen and quasiequivalent variations in antibody binding. J Virol (2003) 1.29

Tetrairidium, a four-atom cluster, is readily visible as a density label in three-dimensional cryo-EM maps of proteins at 10-25 A resolution. J Struct Biol (1999) 1.29

The extracellular domain of immunodeficiency virus gp41 protein: expression in Escherichia coli, purification, and crystallization. Protein Sci (1997) 1.29

High-resolution three-dimensional structure of interleukin 1 beta in solution by three- and four-dimensional nuclear magnetic resonance spectroscopy. Biochemistry (1991) 1.28

Dissecting FMR1, the protein responsible for fragile X syndrome, in its structural and functional domains. RNA (1999) 1.26

Peptides corresponding to the heptad repeat motifs in the transmembrane protein (gp41) of human immunodeficiency virus type 1 elicit antibodies to receptor-activated conformations of the envelope glycoprotein. J Virol (2001) 1.26

Novel RNA-binding motif: the KH module. Biopolymers (1999) 1.22

Characterization of the hydrogen bond network in guanosine quartets by internucleotide 3hJ(NC)' and 2hJ(NN) scalar couplings. J Biomol NMR (2000) 1.21

Structure/function studies of human immunodeficiency virus type 1 reverse transcriptase. Alanine scanning mutagenesis of an alpha-helix in the thumb subdomain. J Biol Chem (1994) 1.20

Friedreich's ataxia protein: phylogenetic evidence for mitochondrial dysfunction. Trends Neurosci (1996) 1.19

Genetic transfer of the pigment bacteriorhodopsin into the eukaryote Schizosaccharomyces pombe. FEBS Lett (1989) 1.18

Regulation of HIV-1 protease activity through cysteine modification. Biochemistry (1996) 1.18

Measurement of 3hJNC' connectivities across hydrogen bonds in a 30 kDa protein. J Biomol NMR (1999) 1.17

Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy. Protein Sci (1996) 1.16

Nucleolar protein B23 stimulates nuclear import of the HIV-1 Rev protein and NLS-conjugated albumin. Biochemistry (1997) 1.16

A powerful method of sequential proton resonance assignment in proteins using relayed 15N-1H multiple quantum coherence spectroscopy. FEBS Lett (1989) 1.15

Transcription of T7 DNA containing modified nucleotides by bacteriophage T7 specific RNA polymerase. J Biol Chem (1978) 1.15

Phage display of intact domains at high copy number: a system based on SOC, the small outer capsid protein of bacteriophage T4. Protein Sci (1996) 1.14

Direct identification of NH...N hydrogen bonds in non-canonical base pairs of RNA by NMR spectroscopy. Nucleic Acids Res (1999) 1.11

Isotope-edited multidimensional NMR of calcineurin B in the presence of the non-deuterated detergent CHAPS. J Biomol NMR (1993) 1.11

Avian retrovirus U3 and U5 DNA inverted repeats. Role Of nonsymmetrical nucleotides in promoting full-site integration by purified virion and bacterial recombinant integrases. J Biol Chem (1997) 1.10

Dissociation of heparan sulfate and receptor binding domains of hepatocyte growth factor reveals that heparan sulfate-c-met interaction facilitates signaling. J Biol Chem (2001) 1.10

Identification and localization of bound internal water in the solution structure of interleukin 1 beta by heteronuclear three-dimensional 1H rotating-frame Overhauser 15N-1H multiple quantum coherence NMR spectroscopy. Biochemistry (1990) 1.09

Heparin binding and oligomerization of hepatocyte growth factor/scatter factor isoforms. Heparan sulfate glycosaminoglycan requirement for Met binding and signaling. J Biol Chem (1997) 1.09

Transmembrane location of retinal in bacteriorhodopsin by neutron diffraction. Biochemistry (1990) 1.09

The KH module has an alpha beta fold. FEBS Lett (1995) 1.08

Separation and crystallization of T = 3 and T = 4 icosahedral complexes of the hepatitis B virus core protein. Acta Crystallogr D Biol Crystallogr (1999) 1.07

High-resolution three-dimensional structure of reduced recombinant human thioredoxin in solution. Biochemistry (1991) 1.05

Purification and characterization of the RNase H domain of HIV-1 reverse transcriptase expressed in recombinant Escherichia coli. FEBS Lett (1990) 1.05

Squeezing protein shells: how continuum elastic models, molecular dynamics simulations, and experiments coalesce at the nanoscale. Biophys J (2010) 1.05

HIV-2 protease is inactivated after oxidation at the dimer interface and activity can be partly restored with methionine sulphoxide reductase. Biochem J (2000) 1.04

Analysis of the backbone dynamics of the ribonuclease H domain of the human immunodeficiency virus reverse transcriptase using 15N relaxation measurements. Biochemistry (1992) 1.03

Localization of the N terminus of hepatitis B virus capsid protein by peptide-based difference mapping from cryoelectron microscopy. Proc Natl Acad Sci U S A (1998) 1.03