Published in Proteins on February 15, 2002
Structural evolution of the protein kinase-like superfamily. PLoS Comput Biol (2005) 2.48
Comparative protein structure modeling by iterative alignment, model building and model assessment. Nucleic Acids Res (2003) 2.44
On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins. Biophys J (2006) 1.79
Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices. Nucleic Acids Res (2004) 1.23
Three globin lineages belonging to two structural classes in genomes from the three kingdoms of life. Proc Natl Acad Sci U S A (2005) 1.22
Assessing strategies for improved superfamily recognition. Protein Sci (2005) 1.21
Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction. BMC Bioinformatics (2006) 1.05
A comprehensive system for evaluation of remote sequence similarity detection. BMC Bioinformatics (2007) 1.05
A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction. Sci Rep (2013) 0.97
ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins. BMC Bioinformatics (2005) 0.94
LigProf: a simple tool for in silico prediction of ligand-binding sites. J Mol Model (2007) 0.78
Linear predictive coding representation of correlated mutation for protein sequence alignment. BMC Bioinformatics (2010) 0.76
Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics (2004) 0.76
Overcoming sequence misalignments with weighted structural superposition. Proteins (2012) 0.75
Benchmarking the next generation of homology inference tools. Bioinformatics (2016) 0.75
Virtual interactomics of proteins from biochemical standpoint. Mol Biol Int (2012) 0.75
A comparison of different functions for predicted protein model quality assessment. J Comput Aided Mol Des (2016) 0.75