PubRank

Daniel Hoffmann

Author PubWeight™ 54.27‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype. Proc Natl Acad Sci U S A 2002 3.46
2 Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res 2003 2.37
3 Learning multiple evolutionary pathways from cross-sectional data. J Comput Biol 2005 1.74
4 Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinformatics 2005 1.41
5 Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients. Antivir Ther 2006 1.37
6 Backbone rigidity and static presentation of guanidinium groups increases cellular uptake of arginine-rich cell-penetrating peptides. Nat Commun 2011 1.30
7 Predicting Bevirimat resistance of HIV-1 from genotype. BMC Bioinformatics 2010 1.30
8 Prediction of co-receptor usage of HIV-1 from genotype. PLoS Comput Biol 2010 1.29
9 Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinformatics 2005 1.27
10 Structures of the Common Cyclodextrins and Their Larger Analogues-Beyond the Doughnut. Chem Rev 1998 1.20
11 Estimating HIV evolutionary pathways and the genetic barrier to drug resistance. J Infect Dis 2005 1.19
12 Characterization of methicillin-resistant Staphylococcus spp. carrying the mecC gene, isolated from wildlife. J Antimicrob Chemother 2013 1.17
13 Tenofovir resistance and resensitization. Antimicrob Agents Chemother 2003 1.10
14 Prevalence of minor variants of HIV strains at reverse transcriptase position 103 in therapy-naïve patients and their impact on the virological failure. J Clin Virol 2009 1.06
15 Methods for optimizing antiviral combination therapies. Bioinformatics 2003 1.02
16 Sonic hedgehog shedding results in functional activation of the solubilized protein. Dev Cell 2011 1.02
17 CD8+ T-cell response promotes evolution of hepatitis C virus nonstructural proteins. Gastroenterology 2011 1.01
18 Screening for disulfide bonds in proteins by MALDI in-source decay and LIFT-TOF/TOF-MS. Anal Chem 2002 1.00
19 The amino acid substitutions rtP177G and rtF249A in the reverse transcriptase domain of hepatitis B virus polymerase reduce the susceptibility to tenofovir. Antiviral Res 2012 1.00
20 Rpd3-dependent boundary formation at telomeres by removal of Sir2 substrate. Proc Natl Acad Sci U S A 2010 0.99
21 SearchXLinks. A program for the identification of disulfide bonds in proteins from mass spectra. Anal Chem 2006 0.94
22 Prevalence of C-terminal gag cleavage site mutations in HIV from therapy-naïve patients. J Infect 2008 0.94
23 Novel algorithm for non-invasive assessment of fibrosis in NAFLD. PLoS One 2013 0.93
24 Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism. AIDS Res Ther 2010 0.93
25 Interpol: An R package for preprocessing of protein sequences. BioData Min 2011 0.92
26 Machine learning on normalized protein sequences. BMC Res Notes 2011 0.92
27 Microfluidic biochip for chemiluminescent detection of allergen-specific antibodies. Biosens Bioelectron 2008 0.91
28 Alternative proteolytic processing of hepatocyte growth factor during wound repair. Am J Pathol 2009 0.91
29 The imprinted NPAP1/C15orf2 gene in the Prader-Willi syndrome region encodes a nuclear pore complex associated protein. Hum Mol Genet 2012 0.89
30 Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers. BioData Min 2011 0.88
31 Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy. J Clin Virol 2005 0.88
32 Photoaffinity labelling of the human GM2-activator protein. Mechanistic insight into ganglioside GM2 degradation. Eur J Biochem 2004 0.87
33 Structural modeling of ataxin-3 reveals distant homology to adaptins. Proteins 2003 0.86
34 Evolutionary Pareto-optimization of stably folding peptides. BMC Bioinformatics 2008 0.86
35 Escape from a dominant HLA-B*15-restricted CD8+ T cell response against hepatitis C virus requires compensatory mutations outside the epitope. J Virol 2011 0.86
36 Differential selection in HIV-1 gp120 between subtype B and East Asian variant B'. Virol Sin 2014 0.85
37 An emerging role of Sonic hedgehog shedding as a modulator of heparan sulfate interactions. J Biol Chem 2012 0.84
38 A multiobjective evolutionary method for the design of peptidic mimotopes. J Comput Biol 2006 0.84
39 A small set of succinct signature patterns distinguishes Chinese and non-Chinese HIV-1 genomes. PLoS One 2013 0.83
40 The B-cell epitope of the monoclonal anti-factor VIII antibody ESH8 characterized by peptide array analysis. Thromb Haemost 2008 0.83
41 The normal-mode entropy in the MM/GBSA method: effect of system truncation, buffer region, and dielectric constant. J Chem Inf Model 2012 0.82
42 The enzyme-binding region of human GM2-activator protein. FEBS J 2006 0.82
43 mecC- and mecA-positive meticillin-resistant Staphylococcus aureus (MRSA) isolated from livestock sharing habitat with wildlife previously tested positive for mecC-positive MRSA. Vet Dermatol 2014 0.81
44 Parental origin and functional relevance of a de novo UBE3A variant. Eur J Med Genet 2010 0.80
45 Design of a modular protein-based MRI contrast agent for targeted application. PLoS One 2013 0.80
46 Transient domain interactions enhance the affinity of the mitotic regulator Pin1 toward phosphorylated peptide ligands. Structure 2013 0.80
47 An additional glucose dehydrogenase from Sulfolobus solfataricus: fine-tuning of sugar degradation? Biochem Soc Trans 2011 0.79
48 Widespread regulation of gene expression in the Drosophila genome by the histone acetyltransferase dTip60. Chromosoma 2009 0.78
49 Single-domain parvulins constitute a specific marker for recently proposed deep-branching archaeal subgroups. Evol Bioinform Online 2011 0.78
50 Estimating affinities of calcium ions to proteins. Adv Appl Bioinform Chem 2010 0.77
51 Partial reduction and two-step modification of proteins for identification of disulfide bonds. Anal Chem 2002 0.76
52 Inference of global HIV-1 sequence patterns and preliminary feature analysis. Virol Sin 2013 0.76
53 A new approach to inhibit human β-tryptase by protein surface binding of four-armed peptide ligands with two different sets of arms. Org Biomol Chem 2013 0.76
54 Virus-Induced Type I Interferon Deteriorates Control of Systemic Pseudomonas Aeruginosa Infection. Cell Physiol Biochem 2015 0.75
55 The antiretroviral potency of emtricitabine is approximately 3-fold higher compared to lamivudine in dual human immunodeficiency virus type 1 infection/competition experiments in vitro. Antiviral Res 2010 0.75