Genomic microsatellites as evolutionary chronometers: a test in wild cats.

PubWeight™: 1.25‹?› | Rank: Top 10%

🔗 View Article (PMC 155278)

Published in Genome Res on March 01, 2002

Authors

Carlos A Driscoll1, Marilyn Menotti-Raymond, George Nelson, David Goldstein, Stephen J O'Brien

Author Affiliations

1: Intramural Research Support Program, SAIC Frederick, National Cancer Institute-Frederick, Frederick, MD 21702-1201, USA.

Articles citing this

Phylogeography and genetic ancestry of tigers (Panthera tigris). PLoS Biol (2004) 1.60

Autosomal and mtDNA Markers Affirm the Distinctiveness of Lions in West and Central Africa. PLoS One (2015) 1.50

Molecular evidence for species-level distinctions in clouded leopards. Curr Biol (2006) 1.41

The evolutionary dynamics of the lion Panthera leo revealed by host and viral population genomics. PLoS Genet (2008) 1.32

Forest corridors maintain historical gene flow in a tiger metapopulation in the highlands of central India. Proc Biol Sci (2013) 1.32

An unbiased estimator of gene diversity in samples containing related individuals. Mol Biol Evol (2008) 1.18

An analysis of microsatellite loci in Arabidopsis thaliana: mutational dynamics and application. Genetics (2003) 1.11

Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates. Mol Ecol (2011) 1.04

Genomic legacy of the African cheetah, Acinonyx jubatus. Genome Biol (2015) 0.93

Gene flow and demographic history of leopards (Panthera pardus) in the central Indian highlands. Evol Appl (2013) 0.84

Validation of a short tandem repeat multiplex typing system for genetic individualization of domestic cat samples. Croat Med J (2007) 0.84

Genetic Introgression and the Survival of Florida Panther Kittens. Biol Conserv (2010) 0.83

Dual phylogenetic origins of Nigerian lions (Panthera leo). Ecol Evol (2014) 0.79

Invasive predators deplete genetic diversity of island lizards. PLoS One (2010) 0.77

Purifying Selection Bias against Microsatellites in Gene Rich Segmental Duplications in the Rice Genome. Int J Evol Biol (2012) 0.76

European wildcat populations are subdivided into five main biogeographic groups: consequences of Pleistocene climate changes or recent anthropogenic fragmentation? Ecol Evol (2015) 0.75

Fenced and Fragmented: Conservation Value of Managed Metapopulations. PLoS One (2015) 0.75

Sequence differences at orthologous microsatellites inflate estimates of human-chimpanzee differentiation. BMC Genomics (2014) 0.75

Articles cited by this

Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics (1992) 21.26

A measure of population subdivision based on microsatellite allele frequencies. Genetics (1995) 19.85

Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland. Nat Genet (1992) 15.62

Launching microsatellites: a review of mutation processes and methods of phylogenetic interference. J Hered (1997) 14.13

Mutation of human short tandem repeats. Hum Mol Genet (1993) 14.03

A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet Res (1973) 13.08

Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics (1993) 8.60

Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics (1992) 6.40

Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat. Am J Hum Genet (1998) 5.26

Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics (1996) 4.55

Detection of an unstable fragment of DNA specific to individuals with myotonic dystrophy. Nature (1992) 4.44

Estimating Y chromosome specific microsatellite mutation frequencies using deep rooting pedigrees. Hum Mol Genet (1997) 3.78

Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs. Am J Hum Genet (2000) 3.59

Microsatellite instability in yeast: dependence on the length of the microsatellite. Genetics (1997) 3.51

Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci. Proc Natl Acad Sci U S A (1997) 3.32

Genetic basis for species vulnerability in the cheetah. Science (1985) 3.16

Genetic evidence for a Paleolithic human population expansion in Africa. Proc Natl Acad Sci U S A (1998) 3.02

A genetic linkage map of microsatellites in the domestic cat (Felis catus). Genomics (1999) 2.99

Heterogeneous mutation processes in human microsatellite DNA sequences. Nat Genet (2000) 2.98

The direction of microsatellite mutations is dependent upon allele length. Nat Genet (2000) 2.97

Microsatellite variability and genetic distances. Proc Natl Acad Sci U S A (1995) 2.94

East African cheetahs: evidence for two population bottlenecks? Proc Natl Acad Sci U S A (1987) 2.73

Genomic ancestry of the American puma (Puma concolor). J Hered (2000) 2.34

Mammalian evolution and the great american interchange. Science (1982) 1.96

Characterization of ancestral and derived Y-chromosome haplotypes of New World native populations. Am J Hum Genet (1998) 1.94

High mutation rate of a long microsatellite allele in Drosophila melanogaster provides evidence for allele-specific mutation rates. Mol Biol Evol (1998) 1.92

A role for molecular genetics in biological conservation. Proc Natl Acad Sci U S A (1994) 1.88

The consequences of demographic reduction and genetic depletion in the endangered Florida panther. Curr Biol (1993) 1.79

The cheetah is depauperate in genetic variation. Science (1983) 1.75

Estimation of microsatellite mutation rates in recombinant inbred strains of mouse. Mamm Genome (1992) 1.69

Microsatellite mutations and inferences about human demography. Genetics (2000) 1.37

Evolutionary conservation of ten microsatellite loci in four species of Felidae. J Hered (1995) 1.33

A polymorphic X-linked tetranucleotide repeat locus displaying a high rate of new mutation: implications for mechanisms of mutation at short tandem repeat loci. Hum Mol Genet (1993) 1.32

Mutation rates at porcine microsatellite loci. Mamm Genome (1995) 1.23

Mutations at Y-STR loci: implications for paternity testing and forensic analysis. Forensic Sci Int (2001) 1.22

DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history. Proc Natl Acad Sci U S A (1990) 1.22

Analytical DNA fingerprinting in lions: parentage, genetic diversity, and kinship. J Hered (1991) 1.12

Dating the genetic bottleneck of the African cheetah. Proc Natl Acad Sci U S A (1993) 1.10

Experimentally observed germline mutations at human micro- and minisatellite loci. Eur J Hum Genet (1999) 0.99

Mutation rate in human microsatellites. Am J Hum Genet (1999) 0.95

Articles by these authors

Erlotinib plus gemcitabine compared with gemcitabine alone in patients with advanced pancreatic cancer: a phase III trial of the National Cancer Institute of Canada Clinical Trials Group. J Clin Oncol (2007) 25.52

Increased survival in pancreatic cancer with nab-paclitaxel plus gemcitabine. N Engl J Med (2013) 16.24

Methods for high-density admixture mapping of disease genes. Am J Hum Genet (2004) 12.02

A high-density admixture map for disease gene discovery in african americans. Am J Hum Genet (2004) 10.87

HLA and NK cell inhibitory receptor genes in resolving hepatitis C virus infection. Science (2004) 8.22

The influence of HLA genotype on AIDS. Annu Rev Med (2001) 7.77

Epistatic interaction between KIR3DS1 and HLA-B delays the progression to AIDS. Nat Genet (2002) 7.58

Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1. Nat Genet (2007) 6.83

Adjuvant chemotherapy with fluorouracil plus folinic acid vs gemcitabine following pancreatic cancer resection: a randomized controlled trial. JAMA (2010) 6.65

Placental mammal diversification and the Cretaceous-Tertiary boundary. Proc Natl Acad Sci U S A (2003) 6.29

A molecular phylogeny of living primates. PLoS Genet (2011) 5.61

Randomized trial of short-course radiotherapy versus long-course chemoradiation comparing rates of local recurrence in patients with T3 rectal cancer: Trans-Tasman Radiation Oncology Group trial 01.04. J Clin Oncol (2012) 4.91

Initial sequence and comparative analysis of the cat genome. Genome Res (2007) 4.67

Identification of metastasis-related microRNAs in hepatocellular carcinoma. Hepatology (2008) 4.50

A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction. Nat Genet (2005) 4.45

Mapping by admixture linkage disequilibrium: advances, limitations and guidelines. Nat Rev Genet (2005) 4.04

Common genetic variation and the control of HIV-1 in humans. PLoS Genet (2009) 3.68

Balancing selection at the prion protein gene consistent with prehistoric kurulike epidemics. Science (2003) 3.59

Genetic restoration of the Florida panther. Science (2010) 3.59

The late Miocene radiation of modern Felidae: a genetic assessment. Science (2006) 3.35

Mammalian phylogenomics comes of age. Trends Genet (2004) 3.31

Influence of HLA-C expression level on HIV control. Science (2013) 3.27

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evol Biol (2008) 3.21

Hemoglobin A1c measurements over nearly two decades: sustaining comparable values throughout the Diabetes Control and Complications Trial and the Epidemiology of Diabetes Interventions and Complications study. Clin Chem (2005) 3.15

HLA-C cell surface expression and control of HIV/AIDS correlate with a variant upstream of HLA-C. Nat Genet (2009) 3.03

AIDS restriction HLA allotypes target distinct intervals of HIV-1 pathogenesis. Nat Med (2005) 2.97

The Near Eastern origin of cat domestication. Science (2007) 2.90

Cerebrospinal fluid biomarkers for Parkinson disease diagnosis and progression. Ann Neurol (2011) 2.84

High-resolution patterns of meiotic recombination across the human major histocompatibility complex. Am J Hum Genet (2002) 2.71

Initial and late resistance to imatinib in advanced gastrointestinal stromal tumors are predicted by different prognostic factors: a European Organisation for Research and Treatment of Cancer-Italian Sarcoma Group-Australasian Gastrointestinal Trials Group study. J Clin Oncol (2005) 2.68

Pancreatic stellate cells: partners in crime with pancreatic cancer cells. Cancer Res (2008) 2.66

Optimal duration and timing of adjuvant chemotherapy after definitive surgery for ductal adenocarcinoma of the pancreas: ongoing lessons from the ESPAC-3 study. J Clin Oncol (2014) 2.64

Public stem cell banks: considerations of justice in stem cell research and therapy. Hastings Cent Rep (2004) 2.53

A systematic review of the effect of waiting for treatment for chronic pain. Pain (2007) 2.52

Biological variation of glycohemoglobin. Clin Chem (2002) 2.38

Differential microRNA regulation of HLA-C expression and its association with HIV control. Nature (2011) 2.36

Strong influence of human leukocyte antigen (HLA)-DP gene variants on development of persistent chronic hepatitis B virus carriers in the Han Chinese population. Hepatology (2011) 2.24

Molecular genetics and evolution of melanism in the cat family. Curr Biol (2003) 2.16

Cytonuclear genomic dissociation in African elephant species. Nat Genet (2004) 2.16

KIR/HLA pleiotropism: protection against both HIV and opportunistic infections. PLoS Pathog (2006) 2.06

The adequacy of morphology for reconstructing the early history of placental mammals. Syst Biol (2007) 2.03

Association of a single nucleotide polymorphism near the interleukin-28B gene with response to hepatitis C therapy in HIV/hepatitis C virus-coinfected patients. AIDS (2010) 1.99

Postoperative intensity-modulated radiotherapy following surgery for oral cavity squamous cell carcinoma: patterns of failure. Oral Oncol (2012) 1.98

APOBEC3G genetic variants and their influence on the progression to AIDS. J Virol (2004) 1.97

Elevated male European and female African contributions to the genomes of African American individuals. Hum Genet (2006) 1.97

Revision anterior cruciate ligament reconstruction: etiology of failures and clinical results. J Knee Surg (2004) 1.96

Cutting edge: susceptibility to psoriatic arthritis: influence of activating killer Ig-like receptor genes in the absence of specific HLA-C alleles. J Immunol (2002) 1.95

From wild animals to domestic pets, an evolutionary view of domestication. Proc Natl Acad Sci U S A (2009) 1.95

Balanced polymorphism selected by genetic versus infectious human disease. Annu Rev Genomics Hum Genet (2002) 1.93

Behavioral risk exposure and host genetics of susceptibility to HIV-1 infection. J Infect Dis (2005) 1.89

Cancer patient preferences for communication of prognosis in the metastatic setting. J Clin Oncol (2004) 1.88

Role of pancreatic stellate cells in pancreatic cancer metastasis. Am J Pathol (2010) 1.87

Guidelines for naming nonprimate APOBEC3 genes and proteins. J Virol (2008) 1.86

Every genome sequence needs a good map. Genome Res (2009) 1.85

Genome-wide scans for footprints of natural selection. Philos Trans R Soc Lond B Biol Sci (2010) 1.84

HLA-Cw*04 and hepatitis C virus persistence. J Virol (2002) 1.83

Pancreatic stellate cells and pancreatic cancer cells: an unholy alliance. Cancer Res (2008) 1.77

Effect of sertraline on symptoms and survival in patients with advanced cancer, but without major depression: a placebo-controlled double-blind randomised trial. Lancet Oncol (2007) 1.74

Immunohistochemistry for SDHB divides gastrointestinal stromal tumors (GISTs) into 2 distinct types. Am J Surg Pathol (2010) 1.73

CCL3L1 and HIV/AIDS susceptibility. Nat Med (2009) 1.73

Accounting for multiple comparisons in a genome-wide association study (GWAS). BMC Genomics (2010) 1.71

Treatment of fluorouracil-refractory patients with liver metastases from colorectal cancer by using yttrium-90 resin microspheres plus concomitant systemic irinotecan chemotherapy. J Clin Oncol (2009) 1.70

The adaptive evolution of the mammalian mitochondrial genome. BMC Genomics (2008) 1.69

Ecological and biogeographical inferences on two sympatric and enigmatic Andean cat species using genetic identification of faecal samples. Mol Ecol (2008) 1.68

Mesozoic origin for West Indian insectivores. Nature (2004) 1.67

Half of patients with obstructive sleep apnea have a higher NREM AHI than REM AHI. Sleep Med (2006) 1.66

Patterns of molecular genetic variation among African elephant populations. Mol Ecol (2002) 1.64

Functions, structure, and read-through alternative splicing of feline APOBEC3 genes. Genome Biol (2008) 1.63

A family matter: conclusive resolution of the taxonomic position of the long-fingered bats, miniopterus. Mol Biol Evol (2007) 1.62

Modulating influence on HIV/AIDS by interacting RANTES gene variants. Proc Natl Acad Sci U S A (2002) 1.61

Phylogeography and genetic ancestry of tigers (Panthera tigris). PLoS Biol (2004) 1.60

Interleukin-28B polymorphisms are associated with histological recurrence and treatment response following liver transplantation in patients with hepatitis C virus infection. Hepatology (2011) 1.59

Using mutual information to measure the impact of multiple genetic factors on AIDS. J Acquir Immune Defic Syndr (2006) 1.59

Effects of human TRIM5alpha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection. Virology (2006) 1.59

Solitary extramedullary plasmacytoma of the head and neck--long-term outcome analysis of 68 cases. Head Neck (2008) 1.56

Adjuvant chemotherapy for early colon cancer: what survival benefits make it worthwhile? Eur J Cancer (2010) 1.55

Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations. PLoS One (2008) 1.54

Pancreatic cancer hENT1 expression and survival from gemcitabine in patients from the ESPAC-3 trial. J Natl Cancer Inst (2013) 1.54

Comprehensive analysis of class I and class II HLA antigens and chronic hepatitis B virus infection. J Virol (2003) 1.52

Oxaliplatin-induced neurotoxicity: changes in axonal excitability precede development of neuropathy. Brain (2009) 1.50

Primary pancreatic lymphoma--pancreatic tumours that are potentially curable without resection, a retrospective review of four cases. BMC Cancer (2006) 1.49

Seroprevalence and genomic divergence of circulating strains of feline immunodeficiency virus among Felidae and Hyaenidae species. J Virol (2005) 1.47

Inherited motor neuron disease in domestic cats: a model of spinal muscular atrophy. Pediatr Res (2005) 1.46

Mutation in CEP290 discovered for cat model of human retinal degeneration. J Hered (2007) 1.46

Arthroscopic release of the long head of the biceps tendon: functional outcome and clinical results. Am J Sports Med (2005) 1.46

Detection of water in the LCROSS ejecta plume. Science (2010) 1.44

Multiple origins of Ashkenazi Levites: Y chromosome evidence for both Near Eastern and European ancestries. Am J Hum Genet (2003) 1.44

Restoring tigers to the Caspian region. Science (2011) 1.43

Molecular evidence for species-level distinctions in clouded leopards. Curr Biol (2006) 1.41

Response to letter to the editor with reference to article "Postoperative intensity-modulated radiotherapy following surgery for oral cavity squamous cell carcinoma: patterns of failure". Oral Oncol (2013) 1.40

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Res (2005) 1.40

Risk and response adapted therapy for early stage Hodgkin lymphoma: a prospective multicenter study of the Australasian Leukaemia and Lymphoma Group/Trans-Tasman Radiation Oncology Group. Leuk Lymphoma (2011) 1.39

Tissue sampling methods and standards for vertebrate genomics. Gigascience (2012) 1.39

Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences. Mol Phylogenet Evol (2010) 1.39

Oxaliplatin-induced neurotoxicity and the development of neuropathy. Muscle Nerve (2005) 1.37

Acute abnormalities of sensory nerve function associated with oxaliplatin-induced neurotoxicity. J Clin Oncol (2009) 1.37