PubRank

Koji Nagata

Author PubWeight™ 73.50‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Synergistic activation of the Arabidopsis NADPH oxidase AtrbohD by Ca2+ and phosphorylation. J Biol Chem 2008 1.80
2 Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase. Proc Natl Acad Sci U S A 2003 1.66
3 Homodimeric structure and double-stranded RNA cleavage activity of the C-terminal RNase III domain of human dicer. J Mol Biol 2007 1.36
4 Subunit arrangement in V-ATPase from Thermus thermophilus. J Biol Chem 2003 1.36
5 Novel protein fold discovered in the PabI family of restriction enzymes. Nucleic Acids Res 2007 1.22
6 Crystal structure of A3B3 complex of V-ATPase from Thermus thermophilus. EMBO J 2009 1.14
7 Crystal structure of γ-hexachlorocyclohexane Dehydrochlorinase LinA from Sphingobium japonicum UT26. J Mol Biol 2010 1.12
8 Drastic Ca2+ sensitization of myofilament associated with a small structural change in troponin I in inherited restrictive cardiomyopathy. Biochem Biophys Res Commun 2005 1.12
9 Prospective study of the evaluation of the usefulness of tumor typing by narrow band imaging for the differential diagnosis of gastric adenoma and well-differentiated adenocarcinoma. Dig Endosc 2010 1.10
10 Common mechanism of ligand recognition by group II/III WW domains: redefining their functional classification. J Biol Chem 2004 1.06
11 Determinants of ligand specificity in groups I and IV WW domains as studied by surface plasmon resonance and model building. J Biol Chem 2001 1.05
12 Biological actions of green tea catechins on cardiac troponin C. Br J Pharmacol 2010 1.00
13 Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound. Biochemistry 2006 0.98
14 Expression of MUC1 and MUC2 mucins in extrahepatic bile duct carcinomas: its relationship with tumor progression and prognosis. Pathol Int 2002 0.97
15 Peritoneal keratin granuloma associated with endometrioid adenocarcinoma of the uterine corpus. Diagn Pathol 2011 0.94
16 Squamous intraepithelial neoplasia of the esophagus: past, present, and future. J Gastroenterol 2009 0.91
17 Three-dimensional solution structure of an archaeal FKBP with a dual function of peptidyl prolyl cis-trans isomerase and chaperone-like activities. J Mol Biol 2003 0.91
18 Crystal structure of the YjgF/YER057c/UK114 family protein from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7. Proteins 2006 0.90
19 Re-Evaluation of the PBAN Receptor Molecule: Characterization of PBANR Variants Expressed in the Pheromone Glands of Moths. Front Endocrinol (Lausanne) 2012 0.89
20 The solution structure of molt-inhibiting hormone from the Kuruma prawn Marsupenaeus japonicus. J Biol Chem 2003 0.88
21 Siamycin attenuates fsr quorum sensing mediated by a gelatinase biosynthesis-activating pheromone in Enterococcus faecalis. J Bacteriol 2006 0.88
22 Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio. J Mol Biol 2010 0.88
23 Purification and gene cloning of Fundulus heteroclitus hatching enzyme. A hatching enzyme system composed of high choriolytic enzyme and low choriolytic enzyme is conserved between two different teleosts, Fundulus heteroclitus and medaka Oryzias latipes. FEBS J 2005 0.88
24 Structure-activity relationship of gelatinase biosynthesis-activating pheromone of Enterococcus faecalis. J Bacteriol 2008 0.88
25 Short term results of endoscopic submucosal dissection in superficial esophageal squamous cell neoplasms. World J Gastrointest Endosc 2010 0.87
26 An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA. J Mol Biol 2010 0.86
27 Expression, oxidative refolding, and characterization of six-histidine-tagged recombinant human LECT2, a 16-kDa chemotactic protein with three disulfide bonds. Protein Expr Purif 2003 0.85
28 Crystallization and preliminary X-ray analysis of a monomeric mutant of Azami-Green (mAG), an Aequorea victoria green fluorescent protein-like green-emitting fluorescent protein from the stony coral Galaxea fascicularis. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.85
29 High pressure refolding, purification, and crystallization of flavin reductase from Sulfolobus tokodaii strain 7. Protein Expr Purif 2012 0.84
30 Esophageal squamous cell carcinoma with special reference to its early stage. Best Pract Res Clin Gastroenterol 2013 0.84
31 A case of gastric mucosa-associated lymphoid tissue lymphoma in which magnified endoscopy with narrow band imaging was useful in the diagnosis. World J Gastrointest Endosc 2012 0.84
32 A unique catalytic triad revealed by the crystal structure of APE0912, a short-chain dehydrogenase/reductase family protein from Aeropyrum pernix K1. Proteins 2008 0.84
33 Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless. EMBO J 2010 0.84
34 Development of a peptide antagonist against fsr quorum sensing of Enterococcus faecalis. ACS Chem Biol 2013 0.83
35 Molecular mechanism of distinct salt-dependent enzyme activity of two halophilic nucleoside diphosphate kinases. Biophys J 2009 0.83
36 Reversible and irreversible coiled coils in the stalk domain of ncd motor protein. Biochemistry 2007 0.83
37 Crystal structure of TTHA1264, a putative M16-family zinc peptidase from Thermus thermophilus HB8 that is homologous to the beta subunit of mitochondrial processing peptidase. Proteins 2009 0.83
38 Clinicopathologic characteristics and clinical outcomes of esophageal basaloid squamous carcinoma: experience at a single institution. Int Surg 2013 0.82
39 Ectopic expression of a GlcNAc 6-O-sulfotransferase, GlcNAc6ST-2, in colonic mucinous adenocarcinoma. Glycobiology 2002 0.82
40 Crystal structure of thioredoxin domain of ST2123 from thermophilic archaea Sulfolobus tokodaii strain7. Proteins 2007 0.82
41 Crystal structure and site-directed mutagenesis analyses of haloalkane dehalogenase LinB from Sphingobium sp. strain MI1205. J Bacteriol 2013 0.81
42 Characterization of genomic sequence coding for bromelain inhibitors in pineapple and expression of its recombinant isoform. J Biol Chem 2002 0.81
43 Solution structure of N-terminal SH3 domain of Vav and the recognition site for Grb2 C-terminal SH3 domain. J Biomol NMR 2002 0.80
44 Crystallization and preliminary X-ray analysis of the NADPH-dependent 3-quinuclidinone reductase from Rhodotorula rubra. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.80
45 The crystal structure of l-sorbose reductase from Gluconobacter frateurii complexed with NADPH and l-sorbose. J Mol Biol 2011 0.80
46 Establishment of Sf9 Transformants Constitutively Expressing PBAN Receptor Variants: Application to Functional Evaluation. Front Endocrinol (Lausanne) 2012 0.80
47 Fourier transform infrared spectroscopic study on the binding of Mg2+ to a mutant Akazara scallop troponin C (E142Q). Biopolymers 2004 0.80
48 Crystal structure of the ATPPase subunit and its substrate-dependent association with the GATase subunit: a novel regulatory mechanism for a two-subunit-type GMP synthetase from Pyrococcus horikoshii OT3. J Mol Biol 2009 0.80
49 Structure of TTHA1623, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.80
50 Down-regulation of Gal 3-O-sulfotransferase-2 (Gal3ST-2) expression in human colonic non-mucinous adenocarcinoma. Jpn J Cancer Res 2002 0.80
51 Purification, crystallization and preliminary X-ray analysis of the DNA-binding domain of AdpA, the central transcription factor in the A-factor regulatory cascade in the filamentous bacterium Streptomyces griseus, in complex with a duplex DNA. Acta Crystallogr Sect F Struct Biol Cryst Commun 2012 0.80
52 The Arginine Residue within the C-Terminal Active Core of Bombyx mori Pheromone Biosynthesis-Activating Neuropeptide is Essential for Receptor Binding and Activation. Front Endocrinol (Lausanne) 2012 0.80
53 Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis. J Biol Chem 2013 0.79
54 NMR structural study of troponin C C-terminal domain complexed with troponin I fragment from Akazara scallop. Adv Exp Med Biol 2003 0.79
55 The structure of mAG, a monomeric mutant of the green fluorescent protein Azami-Green, reveals the structural basis of its stable green emission. Acta Crystallogr Sect F Struct Biol Cryst Commun 2010 0.78
56 Complex structure of the DNA-binding domain of AdpA, the global transcription factor in Streptomyces griseus, and a target duplex DNA reveals the structural basis of its tolerant DNA sequence specificity. J Biol Chem 2013 0.78
57 Isolation, cDNA cloning, and structure-based functional characterization of oryctin, a hemolymph protein from the coconut rhinoceros beetle, Oryctes rhinoceros, as a novel serine protease inhibitor. J Biol Chem 2010 0.78
58 Crystallization and preliminary X-ray analysis of gamma-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.78
59 Crystal structure of Dim2p: a preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 A. Proteins 2007 0.78
60 Solution structure and binding specificity of FBP11/HYPA WW domain as Group-II/III. Proteins 2006 0.78
61 Crystallization and preliminary X-ray analysis of 5-keto-D-gluconate reductase from Gluconobacter suboxydans IFO12528 complexed with 5-keto-D-gluconate and NADPH. Acta Crystallogr Sect F Struct Biol Cryst Commun 2010 0.78
62 Crystallization and preliminary X-ray analysis of a putative sensor histidine kinase domain: the C-terminal domain of HksP4 from Aquifex aeolicus VF5. Acta Crystallogr Sect F Struct Biol Cryst Commun 2011 0.78
63 Crystal structure of TTHA1429, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8. Proteins 2008 0.78
64 Crystallization and preliminary X-ray analysis of ZHE1, a hatching enzyme from the zebrafish Danio rerio. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.77
65 Solution structure of a short-chain insecticidal toxin LaIT1 from the venom of scorpion Liocheles australasiae. Biochem Biophys Res Commun 2011 0.77
66 Crystallization and preliminary X-ray analysis of CTP:phosphoethanolamine cytidylyltransferase (ECT) from Saccharomyces cerevisiae. Acta Crystallogr Sect F Struct Biol Cryst Commun 2006 0.77
67 Structure of conjugated polyketone reductase from Candida parapsilosis IFO 0708 reveals conformational changes for substrate recognition upon NADPH binding. Appl Microbiol Biotechnol 2013 0.77
68 Crystallization and preliminary X-ray analysis of human S100A13. Acta Crystallogr Sect F Struct Biol Cryst Commun 2006 0.77
69 Expression, purification, crystallization and X-ray analysis of 3-quinuclidinone reductase from Agrobacterium tumefaciens. Acta Crystallogr Sect F Struct Biol Cryst Commun 2012 0.77
70 Crystallization and preliminary X-ray diffraction analysis of a novel type of phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6. Acta Crystallogr Sect F Struct Biol Cryst Commun 2012 0.77
71 Pathology of non-Helicobacter pylori gastritis: extending the histopathologic horizons. J Gastroenterol 2009 0.77
72 Expression, purification, crystallization and preliminary X-ray analysis of 4-hydroxy-3-methyl-2-keto-pentanoate aldolase (asHPAL) from Arthrobacter simplex strain AKU 626. Acta Crystallogr Sect F Struct Biol Cryst Commun 2012 0.77
73 Biopsy interpretation of colonic biopsies when inflammatory bowel disease is excluded. J Gastroenterol 2012 0.77
74 Expression, purification, crystallization and preliminary X-ray analysis of conjugated polyketone reductase C2 (CPR-C2) from Candida parapsilosis IFO 0708. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.75
75 Crystallization and preliminary X-ray analysis of the C-terminal RNase III domain of human Dicer. Acta Crystallogr Sect F Struct Biol Cryst Commun 2006 0.75
76 Infantile epididymitis with calcification. J Indian Assoc Pediatr Surg 2008 0.75
77 A case of black esophagus with histopathologic description and characterization. Arch Pathol Lab Med 2011 0.75
78 Cerebrovascular disease in type 2 diabetic patients without hypertension. Stroke 2003 0.75
79 Crystallization and preliminary X-ray analysis of PH1010 from Pyrococcus horikoshii OT3, a member of the archaeal DUF54 family of proteins. Acta Crystallogr Sect F Struct Biol Cryst Commun 2007 0.75
80 Crystallization and preliminary X-ray analysis of crustacean hyperglycaemic hormone from the kuruma prawn Marsupenaeus japonicus in its weakly active precursor form. Acta Crystallogr Sect F Struct Biol Cryst Commun 2011 0.75
81 Crystallization and preliminary X-ray analysis of the Ca2+-bound C-terminal lobe of troponin C in complex with a troponin I-derived peptide fragment from Akazara scallop. Acta Crystallogr Sect F Struct Biol Cryst Commun 2007 0.75
82 Purification, crystallization and preliminary X-ray analysis of L-sorbose reductase from Gluconobacter frateurii complexed with L-sorbose or NADPH. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.75
83 Crystallization and preliminary X-ray analysis of the YjgF/YER057c/UK114-family protein ST0811 from Sulfolobus tokodaii strain 7. Acta Crystallogr Sect F Struct Biol Cryst Commun 2005 0.75
84 Crystallization and preliminary X-ray analysis of PH1566, a putative ribosomal RNA-processing factor from the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Acta Crystallogr Sect F Struct Biol Cryst Commun 2005 0.75
85 Structure of calcium-bound human S100A13 at pH 7.5 at 1.8 A resolution. Acta Crystallogr Sect F Struct Biol Cryst Commun 2008 0.75
86 [Structural genomics on development and differentiation of organisms and replication and repair of DNA]. Tanpakushitsu Kakusan Koso 2008 0.75
87 Lymphocyte-Rich Classical Hodgkin Lymphoma. A Case with Difficulty in Distinguishing from Nodular Lymphocyte-Predominant Hodgkin Lymphoma. J Clin Exp Hematop 2015 0.75
88 Structural basis of stereospecific reduction by quinuclidinone reductase. AMB Express 2014 0.75
89 Coordination structures of Mg(2+) and Ca(2+) in three types of tobacco calmodulins in solution: Fourier-transform infrared spectroscopic studies of side-chain COO(-) groups. Biopolymers 2013 0.75
90 Crystal structure of conjugated polyketone reductase (CPR-C1) from Candida parapsilosis IFO 0708 complexed with NADPH. Proteins 2013 0.75
91 An engineered old yellow enzyme that enables efficient synthesis of (4R,6R)-Actinol in a one-pot reduction system. Chembiochem 2015 0.75
92 Spectroscopic and ITC study of the conformational change upon Ca2+-binding in TnC C-lobe and TnI peptide complex from Akazara scallop striated muscle. Biochem Biophys Res Commun 2007 0.75
93 Detection of lymphatic invasion in resected cases of primary pancreatic cancer based on immunohistochemistry of D2-40. Ann Diagn Pathol 2009 0.75
94 Preliminary X-ray crystallographic analysis of thermolysin in the presence of 4 M NaCl. Acta Crystallogr D Biol Crystallogr 2005 0.75
95 1H, 13C and 15N assignments of the tandem WW domains of human MAGI-1/BAP-1. J Biomol NMR 2004 0.75
96 A Rare Case of a Primary Cutaneous Desmoplastic Atypical Granular Cell Tumor. Am J Dermatopathol 2016 0.75
97 1H, 13C, 15N resonance assignments of the cytokine LECT2. J Biomol NMR 2004 0.75
98 Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8. Proteins 2008 0.75
99 [Intraductal papillary mucinous neoplasm of the pancreas: its mucin profile expression]. Nihon Rinsho 2015 0.75
100 Reassessment of histopathology and dermoscopy findings in 145 Japanese cases of melanocytic nevus of the sole: toward a pathological diagnosis of early-stage malignant melanoma in situ. Pathol Int 2010 0.75