Published in Curr Opin Chem Biol on June 01, 2002
MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. RNA (2008) 5.78
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release. BMC Biol (2005) 4.18
Conservation of human alternative splice events in mouse. Nucleic Acids Res (2003) 2.35
The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome. Nucleic Acids Res (2004) 1.91
An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs. Nucleic Acids Res (2006) 1.90
The PTB interacting protein raver1 regulates alpha-tropomyosin alternative splicing. EMBO J (2003) 1.68
Sex-specific expression of alternative transcripts in Drosophila. Genome Biol (2006) 1.53
Antagonistic regulation of alpha-actinin alternative splicing by CELF proteins and polypyrimidine tract binding protein. RNA (2003) 1.47
Identification of stop codon readthrough genes in Saccharomyces cerevisiae. Nucleic Acids Res (2003) 1.42
Emerging roles of BRCA1 alternative splicing. Mol Pathol (2003) 1.41
Two-dimensional fluorescence difference gel electrophoresis for comparative proteomics profiling. Nat Protoc (2006) 1.40
Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases. Genome Biol (2006) 1.13
Gold nanoparticle probe-based gene expression analysis with unamplified total human RNA. Nucleic Acids Res (2004) 1.08
Increasing the relative expression of endogenous non-coding Steroid Receptor RNA Activator (SRA) in human breast cancer cells using modified oligonucleotides. Nucleic Acids Res (2009) 1.07
Genome-wide landscape of alternative splicing events in Brachypodium distachyon. DNA Res (2013) 0.97
Quantitative organelle proteomics of MCF-7 breast cancer cells reveals multiple subcellular locations for proteins in cellular functional processes. J Proteome Res (2010) 0.96
Mass spectrometry-based proteomics of endoscopically collected pancreatic fluid in chronic pancreatitis research. Proteomics Clin Appl (2011) 0.96
Control of alternative pre-mRNA splicing by Ca(++) signals. Biochim Biophys Acta (2008) 0.95
Verification of predicted alternatively spliced Wnt genes reveals two new splice variants (CTNNB1 and LRP5) and altered Axin-1 expression during tumour progression. BMC Genomics (2006) 0.92
A splicing silencer that regulates smooth muscle specific alternative splicing is active in multiple cell types. Nucleic Acids Res (2002) 0.92
Creation and disruption of protein features by alternative splicing -- a novel mechanism to modulate function. Genome Biol (2005) 0.89
Comprehensive analysis of alternative splicing and functionality in neuronal differentiation of P19 cells. PLoS One (2011) 0.88
Genome informatics: current status and future prospects. Circ Res (2003) 0.88
A G-tract element in apoptotic agents-induced alternative splicing. Nucleic Acids Res (2008) 0.88
Mass spectrometry-based proteomics for translational research: a technical overview. Yale J Biol Med (2012) 0.85
Cytoplasmatic post-transcriptional regulation and intracellular signalling. Mol Genet Genomics (2007) 0.83
Micro-processing events in mRNAs identified by DHPLC analysis. Nucleic Acids Res (2002) 0.83
Human mucin MUC1 RNA undergoes different types of alternative splicing resulting in multiple isoforms. Cancer Immunol Immunother (2012) 0.83
Multivariate analysis and visualization of splicing correlations in single-gene transcriptomes. BMC Bioinformatics (2007) 0.81
XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics (2005) 0.81
Improved tagging strategy for protein identification in mammalian cells. BMC Genomics (2005) 0.80
Discovery of novel human transcript variants by analysis of intronic single-block EST with polyadenylation site. BMC Genomics (2009) 0.80
Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops. BMC Genomics (2015) 0.78
SR proteins and the nonsense-mediated decay mechanism are involved in human GLB1 gene alternative splicing. BMC Res Notes (2008) 0.77
The Sequence Characteristics and Expression Models Reveal Superoxide Dismutase Involved in Cold Response and Fruiting Body Development in Volvariella volvacea. Int J Mol Sci (2016) 0.75
Genome-Wide Analysis of Alternative Splicing Provides Insights into Stress Adaptation of the Pacific Oyster. Mar Biotechnol (NY) (2016) 0.75
Understanding alternative splicing: towards a cellular code. Nat Rev Mol Cell Biol (2005) 13.21
Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay. Mol Cell (2004) 4.13
Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1. Mol Cell (2007) 3.22
Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense? Trends Biochem Sci (2008) 2.64
Novel modes of splicing repression by PTB. Trends Biochem Sci (2006) 2.27
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB. Nat Struct Mol Biol (2010) 2.19
Alternative splicing: global insights. FEBS J (2010) 1.76
The PTB interacting protein raver1 regulates alpha-tropomyosin alternative splicing. EMBO J (2003) 1.68
A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zones. Genome Biol (2006) 1.56
A peptide motif in Raver1 mediates splicing repression by interaction with the PTB RRM2 domain. Nat Struct Mol Biol (2006) 1.52
Antagonistic regulation of alpha-actinin alternative splicing by CELF proteins and polypyrimidine tract binding protein. RNA (2003) 1.47
Genome-wide association between branch point properties and alternative splicing. PLoS Comput Biol (2010) 1.24
A splicing repressor domain in polypyrimidine tract-binding protein. J Biol Chem (2005) 1.18
Regulated tissue-specific alternative splicing of enhanced green fluorescent protein transgenes conferred by alpha-tropomyosin regulatory elements in transgenic mice. J Biol Chem (2004) 1.17
Defining the roles and interactions of PTB. Biochem Soc Trans (2012) 1.10
A novel polypyrimidine tract-binding protein paralog expressed in smooth muscle cells. J Biol Chem (2003) 1.08
Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay. BMC Genomics (2010) 1.07
An apparent pseudo-exon acts both as an alternative exon that leads to nonsense-mediated decay and as a zero-length exon. Mol Cell Biol (2006) 1.07
Stoichiometry of a regulatory splicing complex revealed by single-molecule analyses. EMBO J (2010) 1.05
Decoding muscle alternative splicing. Curr Opin Genet Dev (2011) 0.99
Tropomyosin exons as models for alternative splicing. Adv Exp Med Biol (2008) 0.99
Crystallographic analysis of polypyrimidine tract-binding protein-Raver1 interactions involved in regulation of alternative splicing. Structure (2011) 0.94
Expression of human nPTB is limited by extreme suboptimal codon content. PLoS One (2008) 0.92
A splicing silencer that regulates smooth muscle specific alternative splicing is active in multiple cell types. Nucleic Acids Res (2002) 0.92
Repression of alpha-actinin SM exon splicing by assisted binding of PTB to the polypyrimidine tract. RNA (2007) 0.91
A nonsense exon in the Tpm1 gene is silenced by hnRNP H and F. RNA (2008) 0.88
MBNL1 and PTB cooperate to repress splicing of Tpm1 exon 3. Nucleic Acids Res (2013) 0.88
Polypyrimidine tract binding protein regulates alternative splicing of an aberrant pseudoexon in NF1. FEBS J (2008) 0.83
Regulation of alternative pre-mRNA splicing. Methods Mol Biol (2014) 0.83
Visualization of alternative splicing in vivo. Methods (2005) 0.82
A pathway involving HDAC5, cFLIP and caspases regulates expression of the splicing regulator polypyrimidine tract binding protein in the heart. J Cell Sci (2013) 0.81
Four exons of the serotonin receptor 4 gene are associated with multiple distant branch points. RNA (2010) 0.80