Published in Bioinformatics on August 01, 2002
Galaxy: a platform for interactive large-scale genome analysis. Genome Res (2005) 35.75
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res (2004) 18.75
EnsMart: a generic system for fast and flexible access to biological data. Genome Res (2004) 17.64
EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Res (2006) 9.72
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2005) 7.18
The EMBL Nucleotide Sequence Database: major new developments. Nucleic Acids Res (2003) 7.17
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2004) 6.72
The European Bioinformatics Institute's data resources. Nucleic Acids Res (2003) 3.34
HGVbase: a curated resource describing human DNA variation and phenotype relationships. Nucleic Acids Res (2004) 1.93
The Peptaibol Database: a database for sequences and structures of naturally occurring peptaibols. Nucleic Acids Res (2004) 1.68
Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters. Nucleic Acids Res (2003) 1.30
Biowep: a workflow enactment portal for bioinformatics applications. BMC Bioinformatics (2007) 1.13
Swiss EMBnet node web server. Nucleic Acids Res (2003) 1.09
The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe. BMC Genomics (2007) 1.04
The RESID Database of Protein Modifications: 2003 developments. Nucleic Acids Res (2003) 1.04
ClanTox: a classifier of short animal toxins. Nucleic Acids Res (2009) 0.94
Identification of protein functions using a machine-learning approach based on sequence-derived properties. Proteome Sci (2009) 0.90
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. Nucleic Acids Res (2003) 0.90
pubmed2ensembl: a resource for mining the biological literature on genes. PLoS One (2011) 0.89
Interoperability of CABRI Services and Biochemical Pathways Databases. Comp Funct Genomics (2004) 0.84
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. BMC Bioinformatics (2006) 0.83
GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity Database. BMC Bioinformatics (2012) 0.78
Distribution of immunodeficiency fact files with XML--from Web to WAP. BMC Med Inform Decis Mak (2005) 0.78
BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases. Nucleic Acids Res (2003) 0.76
A Fugu-Human Genome Synteny Viewer: web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes. Nucleic Acids Res (2004) 0.75
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res (2003) 52.80
Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res (2003) 38.75
UniProt: the Universal Protein knowledgebase. Nucleic Acids Res (2004) 29.05
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol (2011) 28.61
InterPro: the integrative protein signature database. Nucleic Acids Res (2008) 25.07
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res (2003) 24.72
The Universal Protein Resource (UniProt). Nucleic Acids Res (2005) 23.66
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res (2006) 22.70
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res (2004) 18.75
InterPro, progress and status in 2005. Nucleic Acids Res (2005) 17.53
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics (2009) 15.08
IntAct: an open source molecular interaction database. Nucleic Acids Res (2004) 15.02
The International Protein Index: an integrated database for proteomics experiments. Proteomics (2004) 14.67
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res (2011) 13.45
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res (2003) 12.81
New developments in the InterPro database. Nucleic Acids Res (2007) 12.49
Prepublication data sharing. Nature (2009) 12.24
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2002) 12.05
UniProt archive. Bioinformatics (2004) 11.92
A new bioinformatics analysis tools framework at EMBL-EBI. Nucleic Acids Res (2010) 11.42
A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol (2004) 11.42
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
The GOA database in 2009--an integrated Gene Ontology Annotation resource. Nucleic Acids Res (2008) 10.21
EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Res (2006) 9.72
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinformatics (2006) 8.68
InterProScan 5: genome-scale protein function classification. Bioinformatics (2014) 8.52
The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol (2007) 8.24
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol (2007) 8.03
PRIDE: the proteomics identifications database. Proteomics (2005) 7.52
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2005) 7.18
The EMBL Nucleotide Sequence Database: major new developments. Nucleic Acids Res (2003) 7.17
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2004) 6.72
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. BMC Bioinformatics (2005) 6.58
Analysis Tool Web Services from the EMBL-EBI. Nucleic Acids Res (2013) 5.29
Petabyte-scale innovations at the European Nucleotide Archive. Nucleic Acids Res (2008) 5.21
The UniProt-GO Annotation database in 2011. Nucleic Acids Res (2011) 5.19
EMBL Nucleotide Sequence Database: developments in 2005. Nucleic Acids Res (2006) 5.13
Improvements to services at the European Nucleotide Archive. Nucleic Acids Res (2009) 5.00
High-quality protein knowledge resource: SWISS-PROT and TrEMBL. Brief Bioinform (2002) 4.95
UniProtJAPI: a remote API for accessing UniProt data. Bioinformatics (2008) 4.88
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. Nucleic Acids Res (2008) 4.73
BioCatalogue: a universal catalogue of web services for the life sciences. Nucleic Acids Res (2010) 4.67
IntEnz, the integrated relational enzyme database. Nucleic Acids Res (2004) 4.65
Web services at the European bioinformatics institute. Nucleic Acids Res (2007) 4.48
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
Fast and efficient searching of biological data resources--using EB-eye. Brief Bioinform (2010) 4.19
PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res (2006) 4.19
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. Nucleic Acids Res (2005) 4.15
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinformatics (2007) 3.97
Evidence standards in experimental and inferential INSDC Third Party Annotation data. OMICS (2006) 3.97
The Gene Ontology Annotation (GOA) Database--an integrated resource of GO annotations to the UniProt Knowledgebase. In Silico Biol (2003) 3.86
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. Nucleic Acids Res (2007) 3.84
The proteomics standards initiative. Proteomics (2003) 3.78
Web services at the European Bioinformatics Institute-2009. Nucleic Acids Res (2009) 3.78
Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles. J Proteome Res (2009) 3.77
The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible. Expert Rev Proteomics (2006) 3.74
The IMGT/HLA database. Nucleic Acids Res (2012) 3.61
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nat Biotechnol (2007) 3.55
UniSave: the UniProtKB sequence/annotation version database. Bioinformatics (2006) 3.38
QuickGO: a web-based tool for Gene Ontology searching. Bioinformatics (2009) 3.36
The European Bioinformatics Institute's data resources. Nucleic Acids Res (2003) 3.34
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. Nucleic Acids Res (2003) 3.29
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13
InterPro and InterProScan: tools for protein sequence classification and comparison. Methods Mol Biol (2007) 3.05
The EBI SRS server--recent developments. Bioinformatics (2002) 3.04
The Integr8 project--a resource for genomic and proteomic data. In Silico Biol (2005) 3.03
Applications of InterPro in protein annotation and genome analysis. Brief Bioinform (2002) 3.03
The IMGT/HLA database. Nucleic Acids Res (2010) 2.89
The predictive power of the CluSTr database. Bioinformatics (2005) 2.85
Clinical proteomics: A need to define the field and to begin to set adequate standards. Proteomics Clin Appl (2007) 2.84
Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. Brief Bioinform (2011) 2.79
Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinformatics (2005) 2.74
ASTD: The Alternative Splicing and Transcript Diversity database. Genomics (2008) 2.72
Facing growth in the European Nucleotide Archive. Nucleic Acids Res (2012) 2.67
InterPro: an integrated documentation resource for protein families, domains and functional sites. Brief Bioinform (2002) 2.66
Increase of functional diversity by alternative splicing. Trends Genet (2003) 2.59
The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI). OMICS (2006) 2.38
The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments. Pac Symp Biocomput (2005) 2.29