Published in Genetica on May 01, 2002
Emergence of young human genes after a burst of retroposition in primates. PLoS Biol (2005) 3.08
Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection. Genetics (2003) 1.79
A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution. J Mol Evol (2004) 1.70
Incongruent patterns of local and global genome size evolution in cotton. Genome Res (2004) 1.30
Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates. Mob DNA (2011) 1.00
Drosophila mojoless, a retroposed GSK-3, has functionally diverged to acquire an essential role in male fertility. Mol Biol Evol (2006) 1.00
Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity. Mol Biol Evol (2014) 1.00
Evolutionary origin of regulatory regions of retrogenes in Drosophila. BMC Genomics (2008) 0.99
Persistence of duplicated PAC1 receptors in the teleost, Sparus auratus. BMC Evol Biol (2007) 0.80
Position-associated GC asymmetry of gene duplicates. J Mol Evol (2004) 0.79
Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holocanthus genome sequencing. BMC Genomics (2010) 0.77
The nature of protein domain evolution: shaping the interaction network. Curr Genomics (2010) 0.77
A model for genome size evolution. Bull Math Biol (2014) 0.77
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
Retroposed new genes out of the X in Drosophila. Genome Res (2002) 4.46
Extensive gene traffic on the mammalian X chromosome. Science (2004) 3.89
Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science (2008) 3.71
RNA-based gene duplication: mechanistic and evolutionary insights. Nat Rev Genet (2009) 2.91
New genes in Drosophila quickly become essential. Science (2010) 2.39
Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome. PLoS Biol (2012) 2.29
Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. PLoS Genet (2009) 2.13
High rate of chimeric gene origination by retroposition in plant genomes. Plant Cell (2006) 2.08
Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome. PLoS Biol (2010) 1.98
Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster. Proc Natl Acad Sci U S A (2002) 1.92
Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection. Genetics (2003) 1.79
Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci U S A (2002) 1.70
General gene movement off the X chromosome in the Drosophila genus. Genome Res (2009) 1.68
Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species. Nat Genet (2004) 1.55
Evolving protein functional diversity in new genes of Drosophila. Proc Natl Acad Sci U S A (2004) 1.55
Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Res (2010) 1.54
Rapid divergence of gene duplicates on the Drosophila melanogaster X chromosome. Mol Biol Evol (2002) 1.52
Tight junction-associated MARVEL proteins marveld3, tricellulin, and occludin have distinct but overlapping functions. Mol Biol Cell (2010) 1.51
New genes as drivers of phenotypic evolution. Nat Rev Genet (2013) 1.49
Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet (2007) 1.42
Accelerated recruitment of new brain development genes into the human genome. PLoS Biol (2011) 1.39
Nucleotide variation along the Drosophila melanogaster fourth chromosome. Science (2002) 1.30
Retrogene movement within- and between-chromosomes in the evolution of Drosophila genomes. Gene (2006) 1.24
Evolution of the phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene. Mol Biol Evol (2002) 1.23
The evolution of courtship behaviors through the origination of a new gene in Drosophila. Proc Natl Acad Sci U S A (2008) 1.23
Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila. PLoS Genet (2006) 1.21
Extensive structural renovation of retrogenes in the evolution of the Populus genome. Plant Physiol (2009) 1.18
Direct evidence for postmeiotic transcription during Drosophila melanogaster spermatogenesis. Genetics (2010) 1.15
Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster. Mol Biol Evol (2004) 1.14
A rice gene of de novo origin negatively regulates pathogen-induced defense response. PLoS One (2009) 1.10
Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome. Mol Biol Evol (2009) 1.05
Sex chromosomes and male functions: where do new genes go? Cell Cycle (2004) 1.03
gKaKs: the pipeline for genome-level Ka/Ks calculation. Bioinformatics (2013) 1.03
New genes expressed in human brains: implications for annotating evolving genomes. Bioessays (2012) 1.01
Adaptive evolution of the insulin two-gene system in mouse. Genetics (2008) 0.97
Drosophila duplication hotspots are associated with late-replicating regions of the genome. PLoS Genet (2011) 0.96
Re-analysis of the larval testis data on meiotic sex chromosome inactivation revealed evidence for tissue-specific gene expression related to the drosophila X chromosome. BMC Biol (2012) 0.96
Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. EMBO J (2012) 0.94
The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Mol Plant (2008) 0.92
Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res (2009) 0.92
Origins of new male germ-line functions from X-derived autosomal retrogenes in the mouse. Mol Biol Evol (2007) 0.91
Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method. Proc Natl Acad Sci U S A (2011) 0.91
Mutational bias shaping fly copy number variation: implications for genome evolution. Trends Genet (2010) 0.90
Nucleotide variation and recombination along the fourth chromosome in Drosophila simulans. Genetics (2004) 0.90
A role for convergent evolution in the secretory life of cells. Trends Cell Biol (2007) 0.90
A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res (2014) 0.90
The origin and evolution of new genes. Methods Mol Biol (2012) 0.87
Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila. Cell Rep (2012) 0.87
The rapid generation of chimerical genes expanding protein diversity in zebrafish. BMC Genomics (2010) 0.85
An intronic signal for alternative splicing in the human genome. PLoS One (2007) 0.84
Recurrent tandem gene duplication gave rise to functionally divergent genes in Drosophila. Mol Biol Evol (2008) 0.83
A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics (2011) 0.83
Retrogenes moved out of the z chromosome in the silkworm. J Mol Evol (2012) 0.83
Translational effects of differential codon usage among intragenic domains of new genes in Drosophila. Biochim Biophys Acta (2005) 0.81
Evolution of enzymatic activities of testis-specific short-chain dehydrogenase/reductase in Drosophila. J Mol Evol (2010) 0.81
Positive selection for the male functionality of a co-retroposed gene in the hominoids. BMC Evol Biol (2009) 0.81
Evolution of gene structural complexity: an alternative-splicing-based model accounts for intron-containing retrogenes. Plant Physiol (2014) 0.80
Evolutionary patterns of RNA-based duplication in non-mammalian chordates. PLoS One (2011) 0.80
A new retroposed gene in Drosophila heterochromatin detected by microarray-based comparative genomic hybridization. J Mol Evol (2006) 0.80
High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biol Evol (2013) 0.79
New genes important for development. EMBO Rep (2014) 0.78
Roles of young serine-endopeptidase genes in survival and reproduction revealed rapid evolution of phenotypic effects at adult stages. Fly (Austin) (2011) 0.77
Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome. Mol Biol Evol (2011) 0.77
Highly tissue specific expression of Sphinx supports its male courtship related role in Drosophila melanogaster. PLoS One (2011) 0.77
Why rodent pseudogenes refuse to retire. Genome Biol (2012) 0.77
Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes. BMC Evol Biol (2012) 0.76