| Rank |
Title |
Journal |
Year |
PubWeight™‹?› |
|
1
|
Initial sequencing and comparative analysis of the mouse genome.
|
Nature
|
2002
|
96.15
|
|
2
|
Functional organization of the yeast proteome by systematic analysis of protein complexes.
|
Nature
|
2002
|
45.19
|
|
3
|
SMART 4.0: towards genomic data integration.
|
Nucleic Acids Res
|
2004
|
19.37
|
|
4
|
SMART 5: domains in the context of genomes and networks.
|
Nucleic Acids Res
|
2006
|
17.13
|
|
5
|
Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets.
|
Nat Genet
|
2006
|
6.74
|
|
6
|
HMM Logos for visualization of protein families.
|
BMC Bioinformatics
|
2004
|
5.69
|
|
7
|
Systematic identification of novel protein domain families associated with nuclear functions.
|
Genome Res
|
2002
|
3.50
|
|
8
|
Genome expression analysis of Anopheles gambiae: responses to injury, bacterial challenge, and malaria infection.
|
Proc Natl Acad Sci U S A
|
2002
|
2.59
|
|
9
|
5.8S-28S rRNA interaction and HMM-based ITS2 annotation.
|
Gene
|
2008
|
2.51
|
|
10
|
Inactive enzyme-homologues find new function in regulatory processes.
|
J Mol Biol
|
2004
|
2.47
|
|
11
|
4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
|
BMC Bioinformatics
|
2006
|
2.24
|
|
12
|
The ITS2 Database III--sequences and structures for phylogeny.
|
Nucleic Acids Res
|
2009
|
2.04
|
|
13
|
Predicting protein cellular localization using a domain projection method.
|
Genome Res
|
2002
|
1.98
|
|
14
|
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures.
|
RNA
|
2005
|
1.94
|
|
15
|
Distinguishing species.
|
RNA
|
2007
|
1.74
|
|
16
|
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees.
|
Biol Direct
|
2010
|
1.44
|
|
17
|
The ITS2 Database II: homology modelling RNA structure for molecular systematics.
|
Nucleic Acids Res
|
2007
|
1.41
|
|
18
|
ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies.
|
Mol Phylogenet Evol
|
2012
|
1.28
|
|
19
|
ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments.
|
Bioinformatics
|
2008
|
1.25
|
|
20
|
Evolution of an RNP assembly system: a minimal SMN complex facilitates formation of UsnRNPs in Drosophila melanogaster.
|
Proc Natl Acad Sci U S A
|
2008
|
1.17
|
|
21
|
Structural genomics of human proteins--target selection and generation of a public catalogue of expression clones.
|
Microb Cell Fact
|
2005
|
1.15
|
|
22
|
Human HAD phosphatases: structure, mechanism, and roles in health and disease.
|
FEBS J
|
2012
|
1.06
|
|
23
|
Protein interaction networks--more than mere modules.
|
PLoS Comput Biol
|
2010
|
1.05
|
|
24
|
Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.
|
BMC Bioinformatics
|
2007
|
1.00
|
|
25
|
Evolution of the multifunctional protein tyrosine phosphatase family.
|
Mol Biol Evol
|
2004
|
0.96
|
|
26
|
The ITS2 Database.
|
J Vis Exp
|
2012
|
0.96
|
|
27
|
The protein composition of the digestive fluid from the venus flytrap sheds light on prey digestion mechanisms.
|
Mol Cell Proteomics
|
2012
|
0.95
|
|
28
|
Exonization of active mouse L1s: a driver of transcriptome evolution?
|
BMC Genomics
|
2007
|
0.94
|
|
29
|
Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species.
|
Mol Ecol Resour
|
2008
|
0.93
|
|
30
|
Evolutionary distances in the twilight zone--a rational kernel approach.
|
PLoS One
|
2010
|
0.92
|
|
31
|
Modelling interaction sites in protein domains with interaction profile hidden Markov models.
|
Bioinformatics
|
2006
|
0.91
|
|
32
|
Heat shock protein-90-alpha, a prolactin-STAT5 target gene identified in breast cancer cells, is involved in apoptosis regulation.
|
Breast Cancer Res
|
2008
|
0.90
|
|
33
|
Detecting species-site dependencies in large multiple sequence alignments.
|
Nucleic Acids Res
|
2009
|
0.89
|
|
34
|
Partially-supervised protein subclass discovery with simultaneous annotation of functional residues.
|
BMC Struct Biol
|
2009
|
0.89
|
|
35
|
Explorative data analysis of MCL reveals gene expression networks implicated in survival and prognosis supported by explorative CGH analysis.
|
BMC Cancer
|
2008
|
0.87
|
|
36
|
Variation in structural location and amino acid conservation of functional sites in protein domain families.
|
BMC Bioinformatics
|
2005
|
0.84
|
|
37
|
A kinome of 2600 in the ciliate Paramecium tetraurelia.
|
FEBS Lett
|
2009
|
0.83
|
|
38
|
A novel conserved family of nitric oxide synthase?
|
Trends Biochem Sci
|
2004
|
0.83
|
|
39
|
Evolutionary and structural analyses of mammalian haloacid dehalogenase-type phosphatases AUM and chronophin provide insight into the basis of their different substrate specificities.
|
J Biol Chem
|
2013
|
0.82
|
|
40
|
Positive selection in tick saliva proteins of the Salp15 family.
|
J Mol Evol
|
2009
|
0.81
|
|
41
|
Connectivity, not frequency, determines the fate of a morpheme.
|
PLoS One
|
2013
|
0.79
|
|
42
|
Sequence analysis of multidomain proteins: past perspectives and future directions.
|
Adv Protein Chem
|
2002
|
0.79
|
|
43
|
Developing a protein-interactions ontology.
|
Comp Funct Genomics
|
2003
|
0.78
|
|
44
|
Evolutionary flexibility of protein complexes.
|
BMC Evol Biol
|
2009
|
0.77
|
|
45
|
FHOD proteins in actin dynamics--a formin' class of its own.
|
Small GTPases
|
2014
|
0.76
|
|
46
|
When one plus one equals three: biochemistry and bioinformatics combine to answer complex questions.
|
Fly (Austin)
|
2009
|
0.75
|