Published in Comp Biochem Physiol B Biochem Mol Biol on December 01, 2002
Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev (2004) 7.93
Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol (2005) 4.55
Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa. J Bacteriol (2008) 3.32
Phages in nature. Bacteriophage (2011) 2.00
Movement of viruses between biomes. Appl Environ Microbiol (2004) 1.58
Portal protein diversity and phage ecology. Environ Microbiol (2008) 1.33
Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C. J Bacteriol (2003) 1.32
Lactobacillus plantarum bacteriophage LP65: a new member of the SPO1-like genus of the family Myoviridae. J Bacteriol (2004) 1.32
Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget. Appl Environ Microbiol (2004) 1.26
Characterization of the ELPhiS prophage from Salmonella enterica serovar Enteritidis strain LK5. Appl Environ Microbiol (2012) 1.17
Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1. ISME J (2010) 1.09
Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria. BMC Genomics (2007) 1.00
Clostridium perfringens bacteriophages ΦCP39O and ΦCP26F: genomic organization and proteomic analysis of the virions. Arch Virol (2010) 0.96
The third age of phage. PLoS Biol (2005) 0.93
The diversity of cyanomyovirus populations along a North-South Atlantic Ocean transect. ISME J (2011) 0.88
Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands. BMC Genomics (2012) 0.88
Finding a needle in the virus metagenome haystack--micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire. PLoS One (2012) 0.84
Complete Genomic Sequence of Bacteriophage H188: A Novel Vibrio kanaloae Phage Isolated from Yellow Sea. Curr Microbiol (2016) 0.83
Characterization of the major capsid genes (g23) of T4-type bacteriophages in the wetlands of northeast China. Microb Ecol (2013) 0.81
The complete genome sequence and genetic analysis of ΦCA82 a novel uncultured microphage from the turkey gastrointestinal system. Virol J (2011) 0.79
Virioplankton community structure in Tunisian solar salterns. Appl Environ Microbiol (2012) 0.78
Phylogenetic distribution of the capsid assembly protein gene (g20) of cyanophages in paddy floodwaters in Northeast China. PLoS One (2014) 0.77
Parasite diversity drives rapid host dynamics and evolution of resistance in a bacteria-phage system. Evolution (2016) 0.76
Novel group of podovirus infecting the marine bacterium Alteromonas macleodii. Bacteriophage (2013) 0.76
Virulence Changes to Harveyi Clade Bacteria Infected with Bacteriophage from Vibrio owensii. Indian J Virol (2013) 0.75
Community genomics among stratified microbial assemblages in the ocean's interior. Science (2006) 13.31
Functional metagenomic profiling of nine biomes. Nature (2008) 11.00
The marine viromes of four oceanic regions. PLoS Biol (2006) 10.19
Genomic analysis of uncultured marine viral communities. Proc Natl Acad Sci U S A (2002) 9.21
Baselines and degradation of coral reefs in the Northern Line Islands. PLoS One (2008) 9.10
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature (2003) 8.53
Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics (2006) 7.65
Metagenomic analyses of an uncultured viral community from human feces. J Bacteriol (2003) 6.65
An application of statistics to comparative metagenomics. BMC Bioinformatics (2006) 6.29
Viral metagenomics. Nat Rev Microbiol (2005) 6.04
Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature (2010) 5.92
Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Res (2008) 5.12
Genomic islands and the ecology and evolution of Prochlorococcus. Science (2006) 5.07
RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol (2006) 4.93
Diversity and population structure of a near-shore marine-sediment viral community. Proc Biol Sci (2004) 4.79
Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol (2005) 4.55
Microbial ecology of four coral atolls in the Northern Line Islands. PLoS One (2008) 4.48
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets. BMC Bioinformatics (2010) 4.32
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl Environ Microbiol (2007) 4.32
Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environ Microbiol (2007) 4.21
Here a virus, there a virus, everywhere the same virus? Trends Microbiol (2005) 3.90
Explaining microbial population genomics through phage predation. Nat Rev Microbiol (2009) 3.87
Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc Natl Acad Sci U S A (2013) 3.86
FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioinformatics (2006) 3.65
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS One (2009) 3.41
Transfer of photosynthesis genes to and from Prochlorococcus viruses. Proc Natl Acad Sci U S A (2004) 3.38
Metagenomic signatures of 86 microbial and viral metagenomes. Environ Microbiol (2009) 3.30
Laboratory procedures to generate viral metagenomes. Nat Protoc (2009) 3.20
Viral and microbial community dynamics in four aquatic environments. ISME J (2010) 2.95
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinformatics (2005) 2.94
Metagenomics and future perspectives in virus discovery. Curr Opin Virol (2012) 2.92
Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature (2008) 2.70
Viral diversity and dynamics in an infant gut. Res Microbiol (2008) 2.63
Metagenomic analysis of stressed coral holobionts. Environ Microbiol (2009) 2.62
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol (2009) 2.61
Finding novel genes in bacterial communities isolated from the environment. Bioinformatics (2006) 2.55
Multispecies microbial mutualisms on coral reefs: the host as a habitat. Am Nat (2003) 2.45
Global distribution of nearly identical phage-encoded DNA sequences. FEMS Microbiol Lett (2004) 2.34
Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature (2007) 2.27
Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus. Nat Struct Mol Biol (2010) 2.12
Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Res (2012) 2.10
Hyperspectral and physiological analyses of coral-algal interactions. PLoS One (2009) 2.07
Abundant SAR11 viruses in the ocean. Nature (2013) 2.05
Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques (2005) 1.98
The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLoS One (2013) 1.89
Going viral: next-generation sequencing applied to phage populations in the human gut. Nat Rev Microbiol (2012) 1.89
A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res (2007) 1.85
New abundant microbial groups in aquatic hypersaline environments. Sci Rep (2011) 1.84
Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. PLoS One (2011) 1.83
Spatial distribution of microbial communities in the cystic fibrosis lung. ISME J (2011) 1.83
The airborne metagenome in an indoor urban environment. PLoS One (2008) 1.81
Use of 16S ribosomal DNA for delineation of marine bacterioplankton species. Appl Environ Microbiol (2002) 1.79
Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. ISME J (2013) 1.78
Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico. Environ Microbiol (2008) 1.77
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PLoS One (2011) 1.75
Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung. MBio (2014) 1.74
A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environ Microbiol Rep (2011) 1.64
Analysis of high-throughput sequencing and annotation strategies for phage genomes. PLoS One (2010) 1.64
Viral communities associated with healthy and bleaching corals. Environ Microbiol (2008) 1.64
Comparative metagenomics of microbial traits within oceanic viral communities. ISME J (2011) 1.59
Movement of viruses between biomes. Appl Environ Microbiol (2004) 1.58
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J (2011) 1.55
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proc Natl Acad Sci U S A (2010) 1.53
Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method. Environ Microbiol (2012) 1.52
Roles of viruses in the environment. Environ Microbiol (2009) 1.45
Phage-bacteria infection networks. Trends Microbiol (2012) 1.41
Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics. Environ Microbiol (2012) 1.36
Genomic analysis of multiple Roseophage SIO1 strains. Environ Microbiol (2009) 1.35
Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria. Curr Biol (2008) 1.33
Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C. J Bacteriol (2003) 1.32
Phage community dynamics in hot springs. Appl Environ Microbiol (2004) 1.32
Marine phage genomics: what have we learned? Curr Opin Biotechnol (2005) 1.25
Sequencing platform and library preparation choices impact viral metagenomes. BMC Genomics (2013) 1.24
Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline. Virology (2012) 1.24
Assessing coral reefs on a Pacific-wide scale using the microbialization score. PLoS One (2012) 1.23
Twelve previously unknown phage genera are ubiquitous in global oceans. Proc Natl Acad Sci U S A (2013) 1.23
Widespread association of a Rickettsiales-like bacterium with reef-building corals. Environ Microbiol (2004) 1.22
Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber. BMC Genomics (2009) 1.22
Black reefs: iron-induced phase shifts on coral reefs. ISME J (2011) 1.22
The temperate marine phage PhiHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome. J Virol (2008) 1.21
Influence of coral and algal exudates on microbially mediated reef metabolism. PeerJ (2013) 1.21
Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets. Environ Microbiol (2011) 1.20
Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals. Appl Environ Microbiol (2007) 1.20
Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging. MBio (2012) 1.20
Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. Am J Respir Cell Mol Biol (2011) 1.19
Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness. PLoS One (2013) 1.19
A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains. J Bacteriol (2005) 1.19
Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses. ISME J (2013) 1.18
Holliday junction-binding peptides inhibit distinct junction-processing enzymes. Proc Natl Acad Sci U S A (2005) 1.17
Staphylococcus aureus SarA is a regulatory protein responsive to redox and pH that can support bacteriophage lambda integrase-mediated excision/recombination. Mol Microbiol (2009) 1.17
Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biol (2013) 1.16
Phage metagenomics. Methods Enzymol (2007) 1.15
DNA repair, a novel antibacterial target: Holliday junction-trapping peptides induce DNA damage and chromosome segregation defects. Mol Microbiol (2006) 1.14
Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains. Appl Environ Microbiol (2011) 1.14
Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression. PLoS One (2008) 1.11
Reversible inhibitors of lambda integrase-mediated recombination efficiently trap Holliday junction intermediates and form the basis of a novel assay for junction resolution. J Biol Chem (2003) 1.11