Published in In Silico Biol on January 01, 2002
Nonlinear modelling of cancer: bridging the gap between cells and tumours. Nonlinearity (2010) 2.08
Modeling the effect of deregulated proliferation and apoptosis on the growth dynamics of epithelial cell populations in vitro. Biophys J (2004) 1.61
Angiogenesis and vascular remodelling in normal and cancerous tissues. J Math Biol (2008) 1.55
Hybrid models of tumor growth. Wiley Interdiscip Rev Syst Biol Med (2010) 1.52
Individual-based and continuum models of growing cell populations: a comparison. J Math Biol (2008) 1.49
Cancer evolution: mathematical models and computational inference. Syst Biol (2014) 1.36
Single-molecule genomic data delineate patient-specific tumor profiles and cancer stem cell organization. Cancer Res (2012) 1.28
The role of transforming growth factor-beta-mediated tumor-stroma interactions in prostate cancer progression: an integrative approach. Cancer Res (2009) 1.21
From single cells to tissue architecture-a bottom-up approach to modelling the spatio-temporal organisation of complex multi-cellular systems. J Math Biol (2008) 1.18
Modeling evolutionary dynamics of epigenetic mutations in hierarchically organized tumors. PLoS Comput Biol (2011) 1.18
Role for stromal heterogeneity in prostate tumorigenesis. Cancer Res (2011) 1.18
At the biological modeling and simulation frontier. Pharm Res (2009) 1.15
Nonlinear simulations of solid tumor growth using a mixture model: invasion and branching. J Math Biol (2008) 1.13
Microenvironmental independence associated with tumor progression. Cancer Res (2009) 1.13
Multicell simulations of development and disease using the CompuCell3D simulation environment. Methods Mol Biol (2009) 1.08
Essential operating principles for tumor spheroid growth. BMC Syst Biol (2008) 1.06
Front instabilities and invasiveness of simulated avascular tumors. Bull Math Biol (2009) 1.02
Estimating dose painting effects in radiotherapy: a mathematical model. PLoS One (2014) 0.90
Rule-Based Simulation of Multi-Cellular Biological Systems-A Review of Modeling Techniques. Cell Mol Bioeng (2009) 0.89
Cellular modeling of cancer invasion: integration of in silico and in vitro approaches. J Cell Physiol (2012) 0.89
Promotion of variant human mammary epithelial cell outgrowth by ionizing radiation: an agent-based model supported by in vitro studies. Breast Cancer Res (2010) 0.88
3-D photoacoustic and pulse echo imaging of prostate tumor progression in the mouse window chamber. J Biomed Opt (2011) 0.88
Chemical evolutionary games. Theor Popul Biol (2014) 0.87
A sub-cellular viscoelastic model for cell population mechanics. PLoS One (2010) 0.85
The formation and functional consequences of heterogeneous mitochondrial distributions in skeletal muscle. J Exp Biol (2012) 0.85
The effects of cell compressibility, motility and contact inhibition on the growth of tumor cell clusters using the Cellular Potts Model. J Theor Biol (2013) 0.83
Computational modeling of 3D tumor growth and angiogenesis for chemotherapy evaluation. PLoS One (2014) 0.82
A 3-D model of tumor progression based on complex automata driven by particle dynamics. J Mol Model (2009) 0.79
An Emerging Allee Effect Is Critical for Tumor Initiation and Persistence. PLoS Comput Biol (2015) 0.78
Efficient coarse simulation of a growing avascular tumor. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.77
Front instabilities and invasiveness of simulated 3D avascular tumors. PLoS One (2010) 0.77
Numerical simulation and graphical analysis of in vitro benign tumor growth: application of single-particle state bosonic matter equation with length scaling. J Mol Model (2006) 0.75
A cellular automaton model examining the effects of oxygen, hydrogen ions and lactate on early tumour growth. J Math Biol (2013) 0.75
A general theoretical framework to infer endosomal network dynamics from quantitative image analysis. Curr Biol (2012) 1.64
Membrane identity and GTPase cascades regulated by toggle and cut-out switches. Mol Syst Biol (2008) 1.54
Nonequilibrium clustering of self-propelled rods. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 1.35
Collective motion and nonequilibrium cluster formation in colonies of gliding bacteria. Phys Rev Lett (2012) 1.17
Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology. Bioinformatics (2014) 1.15
Identification of intrinsic in vitro cellular mechanisms for glioma invasion. J Theor Biol (2011) 0.99
Cellular automata as microscopic models of cell migration in heterogeneous environments. Curr Top Dev Biol (2008) 0.97
Early embryonic vascular patterning by matrix-mediated paracrine signalling: a mathematical model study. PLoS One (2011) 0.95
Rippling patterns in aggregates of myxobacteria arise from cell-cell collisions. Phys Rev Lett (2002) 0.93
Evolutionary game theory: cells as players. Mol Biosyst (2014) 0.93
Traffic jams, gliders, and bands in the quest for collective motion of self-propelled particles. Phys Rev Lett (2011) 0.88
Computational cell biology: second theme issue on "computational biology". J Math Biol (2009) 0.84
Pigment pattern formation in zebrafish during late larval stages: a model based on local interactions. Dev Dyn (2005) 0.81
Computational analysis of the influence of the microenvironment on carcinogenesis. Math Biosci (2010) 0.81
Pattern-formation mechanisms in motility mutants of Myxococcus xanthus. Interface Focus (2012) 0.80
Applying dimorphic yeasts as model organisms to study mycelial growth: part 2. Use of mathematical simulations to identify different construction principles in yeast colonies. Bioprocess Biosyst Eng (2010) 0.80
Evolutionary game theory: molecules as players. Mol Biosyst (2014) 0.79
From cells to organisms: current topics in mathematical and theoretical biology. Acta Biotheor (2010) 0.78
A generalized discrete model linking rippling pattern formation and individual cell reversal statistics in colonies of myxobacteria. Phys Biol (2006) 0.77
The coherence of the vesicle theory of protein secretion. J Theor Biol (2008) 0.77
Lattice-gas cellular automaton models for biology: from fluids to cells. Acta Biotheor (2010) 0.76
Parameter estimation with a novel gradient-based optimization method for biological lattice-gas cellular automaton models. J Math Biol (2010) 0.76
Analysis of individual cell trajectories in lattice-gas cellular automaton models for migrating cell populations. Bull Math Biol (2015) 0.76
Applying dimorphic yeasts as model organisms to study mycelial growth: part 1. Experimental investigation of the spatio-temporal development of filamentous yeast colonies. Bioprocess Biosyst Eng (2010) 0.75
Nutritional resources as positional information for morphogenesis in the stony coral Stylophora pistillata. J Theor Biol (2011) 0.75
Modeling discrete combinatorial systems as alphabetic bipartite networks: theory and applications. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.75
Change of mechanical vertebrae properties due to progressive osteoporosis: combined biomechanical and finite-element analysis within a rat model. Med Biol Eng Comput (2014) 0.75
Chemotaxis of mesenchymal stem cells within 3D biomimetic scaffolds--a modeling approach. J Biomech (2010) 0.75
Coverage-maximization in networks under resource constraints. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.75