Published in Development on June 01, 2003
The forkhead transcription factor FoxI1 remains bound to condensed mitotic chromosomes and stably remodels chromatin structure. Mol Cell Biol (2006) 1.47
A mycobacterial operon essential for virulence in vivo and invasion and intracellular persistence in macrophages. Infect Immun (2006) 1.31
Analysis and functional evaluation of the hair-cell transcriptome. Proc Natl Acad Sci U S A (2007) 1.27
Identification of early requirements for preplacodal ectoderm and sensory organ development. PLoS Genet (2010) 1.14
Lateral line, otic and epibranchial placodes: developmental and evolutionary links? J Exp Zool B Mol Dev Evol (2008) 0.91
Integrin-α5 coordinates assembly of posterior cranial placodes in zebrafish and enhances Fgf-dependent regulation of otic/epibranchial cells. PLoS One (2011) 0.91
Pax2/8 proteins coordinate sequential induction of otic and epibranchial placodes through differential regulation of foxi1, sox3 and fgf24. Dev Biol (2011) 0.90
Zebrafish tyrosine hydroxylase 2 gene encodes tryptophan hydroxylase. J Biol Chem (2013) 0.88
Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Res (2007) 0.87
A gene network that coordinates preplacodal competence and neural crest specification in zebrafish. Dev Biol (2012) 0.84
Induction of otic structures by canonical Wnt signalling in medaka. Dev Genes Evol (2009) 0.80
The role of foxi family transcription factors in the development of the ear and jaw. Curr Top Dev Biol (2015) 0.79
Ectodermal P2X receptor function plays a pivotal role in craniofacial development of the zebrafish. Purinergic Signal (2009) 0.79
Fgf3 and Fgf10a work in concert to promote maturation of the epibranchial placodes in zebrafish. PLoS One (2013) 0.75
Statistical potential for assessment and prediction of protein structures. Protein Sci (2006) 8.98
Modeller: generation and refinement of homology-based protein structure models. Methods Enzymol (2003) 7.15
The molecular architecture of the nuclear pore complex. Nature (2007) 6.93
Protein structure modeling with MODELLER. Methods Mol Biol (2008) 6.28
Comparative protein structure modeling using MODELLER. Curr Protoc Protein Sci (2007) 5.81
Determining the architectures of macromolecular assemblies. Nature (2007) 4.94
MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res (2004) 4.54
Outcome of the first electron microscopy validation task force meeting. Structure (2012) 4.35
Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini. Cell (2008) 4.00
Protein production and purification. Nat Methods (2008) 3.97
FoXS: a web server for rapid computation and fitting of SAXS profiles. Nucleic Acids Res (2010) 3.91
Global landscape of HIV-human protein complexes. Nature (2011) 3.70
Tools for comparative protein structure modeling and analysis. Nucleic Acids Res (2003) 3.68
MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res (2006) 3.56
A mycobacterial virulence gene cluster extending RD1 is required for cytolysis, bacterial spreading and ESAT-6 secretion. Mol Microbiol (2004) 3.53
Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach. Proc Natl Acad Sci U S A (2012) 3.42
ModLoop: automated modeling of loops in protein structures. Bioinformatics (2003) 3.31
The molecular sociology of the cell. Nature (2007) 3.23
Protein structure fitting and refinement guided by cryo-EM density. Structure (2008) 3.12
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinformatics (2005) 3.05
Study of the structural dynamics of the E coli 70S ribosome using real-space refinement. Cell (2003) 3.03
Multiple conformations of E. coli Hsp90 in solution: insights into the conformational dynamics of Hsp90. Structure (2008) 2.98
ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res (2010) 2.96
Statistical potentials for fold assessment. Protein Sci (2002) 2.92
Components of coated vesicles and nuclear pore complexes share a common molecular architecture. PLoS Biol (2004) 2.90
Alignment of protein sequences by their profiles. Protein Sci (2004) 2.80
Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection. Nature (2011) 2.71
Genomic-scale prioritization of drug targets: the TDR Targets database. Nat Rev Drug Discov (2008) 2.58
EVA: Evaluation of protein structure prediction servers. Nucleic Acids Res (2003) 2.50
Comparative protein structure modeling by iterative alignment, model building and model assessment. Nucleic Acids Res (2003) 2.44
PIBASE: a comprehensive database of structurally defined protein interfaces. Bioinformatics (2005) 2.39
Reliability of assessment of protein structure prediction methods. Structure (2002) 2.39
Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies. PLoS Biol (2012) 2.37
Simple fold composition and modular architecture of the nuclear pore complex. Proc Natl Acad Sci U S A (2006) 2.35
Integrating diverse data for structure determination of macromolecular assemblies. Annu Rev Biochem (2008) 2.35
A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae. Mol Cell Proteomics (2011) 2.34
Outcome of a workshop on archiving structural models of biological macromolecules. Structure (2006) 2.32
Comparative Protein Structure Modeling Using MODELLER. Curr Protoc Bioinformatics (2014) 2.17
The C-type lectin fold as an evolutionary solution for massive sequence variation. Nat Struct Mol Biol (2005) 2.13
Structure of the mammalian 80S ribosome at 8.7 A resolution. Structure (2008) 2.11
Ligand discovery from a dopamine D3 receptor homology model and crystal structure. Nat Chem Biol (2011) 2.10
UCSF Chimera, MODELLER, and IMP: an integrated modeling system. J Struct Biol (2011) 2.10
Refinement of protein structures by iterative comparative modeling and CryoEM density fitting. J Mol Biol (2006) 2.06
Outcome of a workshop on applications of protein models in biomedical research. Structure (2009) 2.05
Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies. J Mol Biol (2008) 2.05
Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse. Mol Cell Proteomics (2012) 2.03
MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res (2008) 2.02
MODBASE, a database of annotated comparative protein structure models. Nucleic Acids Res (2002) 2.01
ModView, visualization of multiple protein sequences and structures. Bioinformatics (2003) 1.99
A structural perspective on protein-protein interactions. Curr Opin Struct Biol (2004) 1.98
Insights into the mechanism of microtubule stabilization by Taxol. Proc Natl Acad Sci U S A (2006) 1.96
PSI-2: structural genomics to cover protein domain family space. Structure (2009) 1.92
A composite score for predicting errors in protein structure models. Protein Sci (2006) 1.92
Structural genomics: a pipeline for providing structures for the biologist. Protein Sci (2002) 1.91
Determination of cancer risk associated with germ line BRCA1 missense variants by functional analysis. Cancer Res (2007) 1.89
The Enzyme Function Initiative. Biochemistry (2011) 1.87
Structure-based assessment of missense mutations in human BRCA1: implications for breast and ovarian cancer predisposition. Cancer Res (2004) 1.84
Functional roles of aspartate residues of the proton-coupled folate transporter (PCFT-SLC46A1); a D156Y mutation causing hereditary folate malabsorption. Blood (2010) 1.83
Accurate SAXS profile computation and its assessment by contrast variation experiments. Biophys J (2013) 1.83
Insights into the molecular architecture of the 26S proteasome. Proc Natl Acad Sci U S A (2009) 1.81
VISTA, a novel mouse Ig superfamily ligand that negatively regulates T cell responses. J Exp Med (2011) 1.77
Acute effects of alcohol on larval zebrafish: a genetic system for large-scale screening. Pharmacol Biochem Behav (2004) 1.75
Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor. Mol Cell Proteomics (2009) 1.74
7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development. Proc Natl Acad Sci U S A (2009) 1.71
Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel. Proc Natl Acad Sci U S A (2008) 1.68
Pentapeptide repeat proteins. Biochemistry (2006) 1.68
Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy. J Struct Biol (2005) 1.67
Protein structure modeling with MODELLER. Methods Mol Biol (2014) 1.65
Post-translational modifications to Toxoplasma gondii alpha- and beta-tubulins include novel C-terminal methylation. J Proteome Res (2010) 1.64
LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures. Bioinformatics (2002) 1.62
Crystal structure of a eukaryotic phosphate transporter. Nature (2013) 1.60
Gene expression profiling of the human maternal-fetal interface reveals dramatic changes between midgestation and term. Endocrinology (2006) 1.58
The proteasomal subunit Rpn6 is a molecular clamp holding the core and regulatory subcomplexes together. Proc Natl Acad Sci U S A (2011) 1.57
Predicting disulfide bond connectivity in proteins by correlated mutations analysis. Bioinformatics (2008) 1.57
High-throughput computational and experimental techniques in structural genomics. Genome Res (2004) 1.55
Biochemistry. Integrative structural biology. Science (2013) 1.52
How well can the accuracy of comparative protein structure models be predicted? Protein Sci (2008) 1.52
Structural genomics is the largest contributor of novel structural leverage. J Struct Funct Genomics (2009) 1.52
Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT. Nat Struct Mol Biol (2008) 1.51
Functional classification of immune regulatory proteins. Structure (2013) 1.49
Functional impact of missense variants in BRCA1 predicted by supervised learning. PLoS Comput Biol (2006) 1.49
Role of organic cation transporter 3 (SLC22A3) and its missense variants in the pharmacologic action of metformin. Pharmacogenet Genomics (2010) 1.48
Inferential optimization for simultaneous fitting of multiple components into a CryoEM map of their assembly. J Mol Biol (2009) 1.48
Protein components of mitochondrial DNA nucleoids in higher eukaryotes. Mol Cell Proteomics (2003) 1.48
The functional roles of the His247 and His281 residues in folate and proton translocation mediated by the human proton-coupled folate transporter SLC46A1. J Biol Chem (2009) 1.47
The PINK1/Parkin pathway regulates mitochondrial dynamics and function in mammalian hippocampal and dopaminergic neurons. Hum Mol Genet (2011) 1.44
Structure-function mapping of a heptameric module in the nuclear pore complex. J Cell Biol (2012) 1.44
Lack of support for a role for RLIP76 (RALBP1) in response to treatment or predisposition to epilepsy. Epilepsia (2007) 1.43
Alignment of multiple protein structures based on sequence and structure features. Protein Eng Des Sel (2009) 1.43
Finding cures for tropical diseases: is open source an answer? PLoS Med (2004) 1.41
Function of human Rh based on structure of RhCG at 2.1 A. Proc Natl Acad Sci U S A (2010) 1.41
Structural genomics of protein phosphatases. J Struct Funct Genomics (2007) 1.40
Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. Structure (2013) 1.39
Molecular docking screens using comparative models of proteins. J Chem Inf Model (2009) 1.36