Published in Bioinformatics on July 01, 2003
Ligand-induced asymmetry in histidine sensor kinase complex regulates quorum sensing. Cell (2006) 2.48
Structure of aminopeptidase N from Escherichia coli suggests a compartmentalized, gated active site. Proc Natl Acad Sci U S A (2006) 1.33
The structural basis of integrin-linked kinase-PINCH interactions. Proc Natl Acad Sci U S A (2008) 1.21
P. aeruginosa PilT structures with and without nucleotide reveal a dynamic type IV pilus retraction motor. J Mol Biol (2010) 1.12
Intrinsic domain and loop dynamics commensurate with catalytic turnover in an induced-fit enzyme. Structure (2009) 1.09
Structural basis of Rap phosphatase inhibition by Phr peptides. PLoS Biol (2013) 1.02
PSCDB: a database for protein structural change upon ligand binding. Nucleic Acids Res (2011) 0.94
Database of ligand-induced domain movements in enzymes. BMC Struct Biol (2009) 0.93
Structural basis of a rationally rewired protein-protein interface critical to bacterial signaling. Structure (2013) 0.88
Structure of the St. Louis encephalitis virus postfusion envelope trimer. J Virol (2012) 0.88
Structure of the trehalose-6-phosphate phosphatase from Brugia malayi reveals key design principles for anthelmintic drugs. PLoS Pathog (2014) 0.87
Collective dynamics of periplasmic glutamine binding protein upon domain closure. Biophys J (2009) 0.85
Crystal and solution studies of the "Plus-C" odorant-binding protein 48 from Anopheles gambiae: control of binding specificity through three-dimensional domain swapping. J Biol Chem (2013) 0.84
Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity. BMC Bioinformatics (2010) 0.84
Structural basis of the methylation specificity of R.DpnI. Nucleic Acids Res (2014) 0.83
Conformational plasticity of the coiled-coil domain of BmrR is required for bmr operator binding: the structure of unliganded BmrR. J Mol Biol (2010) 0.82
Enzyme closure and nucleotide binding structurally lock guanylate kinase. Biophys J (2011) 0.79
Prediction of protein motions from amino acid sequence and its application to protein-protein interaction. BMC Struct Biol (2010) 0.79
Common exonic missense variants in the C2 domain of the human KIBRA protein modify lipid binding and cognitive performance. Transl Psychiatry (2013) 0.79
ChSeq: A database of chameleon sequences. Protein Sci (2015) 0.78
Crystal structure of Clostridium acetobutylicum Aspartate kinase (CaAK): An important allosteric enzyme for amino acids production. Biotechnol Rep (Amst) (2014) 0.77
First crystal structure of L-lysine 6-dehydrogenase as an NAD-dependent amine dehydrogenase. J Biol Chem (2010) 0.77
Structure and Function in Homodimeric Enzymes: Simulations of Cooperative and Independent Functional Motions. PLoS One (2015) 0.76
Structural Basis for Substrate Preference of SMYD3, a SET Domain-containing Protein Lysine Methyltransferase. J Biol Chem (2016) 0.76
A loose domain swapping organization confers a remarkable stability to the dimeric structure of the arginine binding protein from Thermotoga maritima. PLoS One (2014) 0.76
Structural Dynamics of Human Argonaute2 and Its Interaction with siRNAs Designed to Target Mutant tdp43. Adv Bioinformatics (2016) 0.75
Crystal structures of Trypanosoma brucei oligopeptidase B broaden the paradigm of catalytic regulation in prolyl oligopeptidase family enzymes. PLoS One (2013) 0.75
Small-angle X-ray scattering of calpain-5 reveals a highly open conformation among calpains. J Struct Biol (2016) 0.75
A comprehensive and non-redundant database of protein domain movements. Bioinformatics (2005) 1.31
A method for the analysis of domain movements in large biomolecular complexes. Proteins (2009) 1.24
Connection between stochastic and deterministic modelling of microbial growth. J Theor Biol (2005) 1.16
Stochastic modelling of individual cell growth using flow chamber microscopy images. Int J Food Microbiol (2005) 1.10
Database of ligand-induced domain movements in enzymes. BMC Struct Biol (2009) 0.93
Essential dynamics sampling study of adenylate kinase: comparison to citrate synthase and implication for the hinge and shear mechanisms of domain motions. Proteins (2007) 0.92
Investigating the accessibility of the closed domain conformation of citrate synthase using essential dynamics sampling. J Mol Biol (2004) 0.92
Amyloid formation may involve alpha- to beta sheet interconversion via peptide plane flipping. Structure (2006) 0.90
The interwinding nature of protein-protein interfaces and its implication for protein complex formation. Bioinformatics (2009) 0.86
Path of nascent polypeptide in exit tunnel revealed by molecular dynamics simulation of ribosome. Biophys J (2008) 0.85
Classification of domain movements in proteins using dynamic contact graphs. PLoS One (2013) 0.81
A real-time proximity querying algorithm for haptic-based molecular docking. Faraday Discuss (2014) 0.80
Interacting with the biomolecular solvent accessible surface via a haptic feedback device. BMC Struct Biol (2009) 0.79
DTA: dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins. Bioinformatics (2009) 0.78
Adaptive penalty likelihood for reconstruction of multidimensional confocal microscopy images. Comput Med Imaging Graph (2005) 0.75
MLEM deconvolution of protein X-ray diffraction images based on a multiple-PSF model. IEEE Trans Nanobioscience (2006) 0.75