Published in J Infect Dis on September 09, 2003
Invasion of the central nervous system by intracellular bacteria. Clin Microbiol Rev (2004) 1.71
Use of shell-vial cell culture assay for isolation of bacteria from clinical specimens: 13 years of experience. J Clin Microbiol (2005) 1.48
Tropheryma whipplei in children with gastroenteritis. Emerg Infect Dis (2010) 1.24
The dormant blood microbiome in chronic, inflammatory diseases. FEMS Microbiol Rev (2015) 0.99
Tropheryma whipplei Infection of an acellular porcine heart valve bioprosthesis in a patient who did not have intestinal Whipple's disease. J Clin Microbiol (2004) 0.90
Whipple disease of the central nervous system. J Infect Dis (2003) 0.86
Production of monoclonal antibodies to Tropheryma whipplei and identification of recognized epitopes by two-dimensional electrophoresis and mass spectrometry. J Clin Microbiol (2006) 0.77
Diversity of the human intestinal microbial flora. Science (2005) 49.64
Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
Development of the human infant intestinal microbiota. PLoS Biol (2007) 18.91
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol (2008) 16.57
An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature (2007) 10.92
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet (2008) 10.72
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci U S A (2010) 8.56
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc Natl Acad Sci U S A (2007) 7.82
Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci U S A (2006) 7.77
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Individuality and variation in gene expression patterns in human blood. Proc Natl Acad Sci U S A (2003) 6.49
Gut immune maturation depends on colonization with a host-specific microbiota. Cell (2012) 5.91
Microbiology in the post-genomic era. Nat Rev Microbiol (2008) 4.88
The application of ecological theory toward an understanding of the human microbiome. Science (2012) 4.69
Stereotyped and specific gene expression programs in human innate immune responses to bacteria. Proc Natl Acad Sci U S A (2002) 3.85
Bacterial diversity in the oral cavity of 10 healthy individuals. ISME J (2010) 3.39
Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei. Lancet (2003) 3.30
Assembly of the human intestinal microbiota. Trends Ecol Evol (2006) 3.21
Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation. PLoS One (2008) 3.01
Patterns of host genome-wide gene transcript abundance in the peripheral blood of patients with acute dengue hemorrhagic fever. J Infect Dis (2007) 2.89
Brief communication: fatal human metapneumovirus infection in stem-cell transplant recipients. Ann Intern Med (2006) 2.85
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res (2012) 2.81
Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota. Infect Immun (2007) 2.80
Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria. PLoS One (2012) 2.79
Rapid quantitative profiling of complex microbial populations. Nucleic Acids Res (2006) 2.75
Diversity of human vaginal bacterial communities and associations with clinically defined bacterial vaginosis. Appl Environ Microbiol (2008) 2.73
Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease. Appl Environ Microbiol (2003) 2.72
Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica. PLoS Pathog (2005) 2.71
Methanogenic Archaea and human periodontal disease. Proc Natl Acad Sci U S A (2004) 2.68
Microbial threat lists: obstacles in the quest for biosecurity? Nat Rev Microbiol (2010) 2.63
Temporal variability of human vaginal bacteria and relationship with bacterial vaginosis. PLoS One (2010) 2.62
The human vaginal bacterial biota and bacterial vaginosis. Interdiscip Perspect Infect Dis (2009) 2.56
Public health and biosecurity. Adaptations of avian flu virus are a cause for concern. Science (2012) 2.52
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res (2010) 2.46
Exploring the potential of variola virus infection of cynomolgus macaques as a model for human smallpox. Proc Natl Acad Sci U S A (2004) 2.36
Type I interferon suppresses type II interferon-triggered human anti-mycobacterial responses. Science (2013) 2.34
Breakthrough fungal infections in stem cell transplant recipients receiving voriconazole. Clin Infect Dis (2004) 2.31
CDC4 mutations occur in a subset of colorectal cancers but are not predicted to cause loss of function and are not associated with chromosomal instability. Cancer Res (2005) 2.19
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant. Proc Natl Acad Sci U S A (2010) 2.09
Randomized, placebo-controlled phase 2 trial of a Lactobacillus crispatus probiotic given intravaginally for prevention of recurrent urinary tract infection. Clin Infect Dis (2011) 1.94
Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States. PLoS One (2013) 1.86
Archaea and their potential role in human disease. Infect Immun (2003) 1.86
The host response to smallpox: analysis of the gene expression program in peripheral blood cells in a nonhuman primate model. Proc Natl Acad Sci U S A (2004) 1.85
jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web. PLoS One (2010) 1.82
Microbiota-targeted therapies: an ecological perspective. Sci Transl Med (2012) 1.80
The spectrum of WRN mutations in Werner syndrome patients. Hum Mutat (2006) 1.75
Prevalence and diversity of microbes in the amniotic fluid, the fetal inflammatory response, and pregnancy outcome in women with preterm pre-labor rupture of membranes. Am J Reprod Immunol (2010) 1.74
Dissecting interferon-induced transcriptional programs in human peripheral blood cells. PLoS One (2010) 1.73
Development and optimization of quantitative PCR for the diagnosis of invasive aspergillosis with bronchoalveolar lavage fluid. BMC Infect Dis (2008) 1.70
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. Proc Natl Acad Sci U S A (2013) 1.69
Genomewide analysis of the host response to malaria in Kenyan children. J Infect Dis (2005) 1.66
The role of microbes in Crohn's disease. Clin Infect Dis (2006) 1.65
Bacterial vaginosis: identifying research gaps proceedings of a workshop sponsored by DHHS/NIH/NIAID. Sex Transm Dis (2010) 1.59
Relationship of specific vaginal bacteria and bacterial vaginosis treatment failure in women who have sex with women. Ann Intern Med (2008) 1.59
Single-cell enumeration of an uncultivated TM7 subgroup in the human subgingival crevice. Appl Environ Microbiol (2003) 1.58
Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Appl Environ Microbiol (2008) 1.56
Role of interleukin 6 in myocardial dysfunction of meningococcal septic shock. Lancet (2004) 1.56
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J (2011) 1.55
Early days: genomics and human responses to infection. Curr Opin Microbiol (2006) 1.54
Policy: Adaptations of avian flu virus are a cause for concern. Nature (2012) 1.54
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proc Natl Acad Sci U S A (2010) 1.53
Significant gene order and expression differences in Bordetella pertussis despite limited gene content variation. J Bacteriol (2006) 1.48
Genomics and microbiology. Microbial forensics--"cross-examining pathogens". Science (2002) 1.47
Transforming growth factor-beta signaling pathway in patients with Kawasaki disease. Circ Cardiovasc Genet (2010) 1.45
Antibiotics and the gut microbiota. J Clin Invest (2014) 1.39
Gene-expression patterns reveal underlying biological processes in Kawasaki disease. Genome Biol (2007) 1.39
Images in clinical medicine. Progression of the lesion at the site of inoculation after smallpox vaccination. N Engl J Med (2003) 1.37
Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes. PLoS One (2008) 1.37
In search of biosecurity. Science (2006) 1.33
Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). Genome Res (2012) 1.28
PCR-based diagnosis of human fungal infections. Expert Rev Anti Infect Ther (2009) 1.24
Creating a mammalian-transmissible A/H5N1 influenza virus: social contracts, prudence, and alternative perspectives. J Infect Dis (2012) 1.22
Microbiology: Learning about who we are. Nature (2012) 1.22
Smallpox research activities: U.S. interagency collaboration, 2001. Emerg Infect Dis (2002) 1.20
The temporal program of peripheral blood gene expression in the response of nonhuman primates to Ebola hemorrhagic fever. Genome Biol (2007) 1.20
Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environ Microbiol (2012) 1.16
Broad-range bacterial detection and the analysis of unexplained death and critical illness. Emerg Infect Dis (2002) 1.15
Comparison of quantitative real time PCR with Sequencing and ribosomal RNA-FISH for the identification of fungi in formalin fixed, paraffin-embedded tissue specimens. BMC Infect Dis (2011) 1.14
Risks for acquisition of bacterial vaginosis among women who report sex with women: a cohort study. PLoS One (2010) 1.08
Comparison of oral and vaginal metronidazole for treatment of bacterial vaginosis in pregnancy: impact on fastidious bacteria. BMC Infect Dis (2009) 1.07
More than meets the eye: associations of vaginal bacteria with gram stain morphotypes using molecular phylogenetic analysis. PLoS One (2013) 1.07
Sequencing and analysis of fungal rRNA operons for development of broad-range fungal PCR assays. Appl Environ Microbiol (2009) 1.06
Comparisons of distance methods for combining covariates and abundances in microbiome studies. Pac Symp Biocomput (2012) 1.04
In search of an uncultured human-associated TM7 bacterium in the environment. PLoS One (2011) 1.04
Public health. Understanding threats to scientific openness. Science (2003) 1.02
Transcriptional profiling of the iron starvation response in Bordetella pertussis provides new insights into siderophore utilization and virulence gene expression. J Bacteriol (2011) 1.02
Microbiome assembly across multiple body sites in low-birthweight infants. MBio (2013) 1.02
Metagenomics, infectious disease diagnostics, and outbreak investigations: sequence first, ask questions later? JAMA (2013) 1.00
Extravaginal reservoirs of vaginal bacteria as risk factors for incident bacterial vaginosis. J Infect Dis (2012) 1.00
Lactobacillus proteins are associated with the bactericidal activity against E. coli of female genital tract secretions. PLoS One (2012) 0.99
Temporal dynamics of the transcriptional response to dengue virus infection in Nicaraguan children. PLoS Negl Trop Dis (2012) 0.99
Genetics of adenocarcinomas of the small intestine: frequent deletions at chromosome 18q and mutations of the SMAD4 gene. Oncogene (2002) 0.99
Gene transcript abundance profiles distinguish Kawasaki disease from adenovirus infection. J Infect Dis (2009) 0.99
Growth phase- and nutrient limitation-associated transcript abundance regulation in Bordetella pertussis. Infect Immun (2006) 0.99
Stunned silence: gene expression programs in human cells infected with monkeypox or vaccinia virus. PLoS One (2011) 0.98
Altered biomarkers of mucosal immunity and reduced vaginal Lactobacillus concentrations in sexually active female adolescents. PLoS One (2012) 0.98
Clip closure versus endoscopic suturing versus thoracoscopic repair of an iatrogenic esophageal perforation: a randomized, comparative, long-term survival study in a porcine model (with videos). Gastrointest Endosc (2010) 0.98