Published in J Mol Evol on November 01, 2003
Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. PLoS Genet (2006) 3.01
Natural variation in the splice site strength of a clock gene and species-specific thermal adaptation. Neuron (2008) 1.99
Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection. Genetics (2004) 1.98
Principles of genome evolution in the Drosophila melanogaster species group. PLoS Biol (2007) 1.89
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes. Genome Res (2007) 1.71
Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags. Genetics (2005) 1.56
Selective constraints on intron evolution in Drosophila. Genetics (2003) 1.43
History and structure of sub-Saharan populations of Drosophila melanogaster. Genetics (2006) 1.34
454 sequencing reveals extreme complexity of the class II Major Histocompatibility Complex in the collared flycatcher. BMC Evol Biol (2010) 1.28
SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast. PLoS Genet (2007) 1.21
Diversity and phylogeny of the ectoine biosynthesis genes in aerobic, moderately halophilic methylotrophic bacteria. Extremophiles (2011) 1.17
Genomic representations using concatenates of Type IIB restriction endonuclease digestion fragments. Nucleic Acids Res (2004) 1.15
The evolution of antifungal peptides in Drosophila. Genetics (2005) 1.13
Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophila case study. Genome Biol (2007) 1.11
Molecular evolution in the Drosophila melanogaster species subgroup: frequent parameter fluctuations on the timescale of molecular divergence. Genetics (2005) 1.02
Contrasting evolutionary patterns in Drosophila immune receptors. J Mol Evol (2006) 1.02
The period gene Thr-Gly polymorphism in Australian and African Drosophila melanogaster populations: implications for selection. Genetics (2006) 1.01
A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins. Mol Biol Evol (2009) 0.98
African Drosophila melanogaster and D. simulans populations have similar levels of sequence variability, suggesting comparable effective population sizes. Genetics (2008) 0.97
Comparative genomics of Drosophila mtDNA: Novel features of conservation and change across functional domains and lineages. J Mol Evol (2009) 0.97
Selection, trans-species polymorphism, and locus identification of major histocompatibility complex class IIβ alleles of New World ranid frogs. Immunogenetics (2010) 0.93
Identification and expression analyses of putative sesquiterpene synthase genes in Phormidium sp. and prevalence of geoA-like genes in a drinking water reservoir. Appl Environ Microbiol (2007) 0.91
Adaptation of molecular circadian clockwork to environmental changes: a role for alternative splicing and miRNAs. Proc Biol Sci (2013) 0.86
Phylogenetic incongruence in the Drosophila melanogaster species group. Mol Phylogenet Evol (2006) 0.85
Ancestral inference and the study of codon bias evolution: implications for molecular evolutionary analyses of the Drosophila melanogaster subgroup. PLoS One (2007) 0.84
MHC class II DRB diversity, selection pattern and population structure in a neotropical bat species, Noctilio albiventris. Heredity (Edinb) (2011) 0.83
Strong regional heterogeneity in base composition evolution on the Drosophila X chromosome. Genetics (2006) 0.83
Biome representational in silico karyotyping. Genome Res (2011) 0.83
Whole genome phylogenies for multiple Drosophila species. BMC Res Notes (2012) 0.79
Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution. Genetics (2015) 0.78
Molecular characterization of the piggyBac-like element, a candidate marker for phylogenetic research of Chilo suppressalis (Walker) in China. BMC Mol Biol (2014) 0.78
Two different rickettsial bacteria invading Volvox carteri. PLoS One (2015) 0.76
Activation of Latent Courtship Circuitry in the Brain of Drosophila Females Induces Male-like Behaviors. Curr Biol (2016) 0.75
Random Tagging Genotyping by Sequencing (rtGBS), an Unbiased Approach to Locate Restriction Enzyme Sites across the Target Genome. PLoS One (2015) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90
Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol (1981) 67.56
CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene (1988) 42.41
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol (1993) 38.03
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol (1994) 24.04
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput Appl Biosci (1997) 17.32
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP. Evolution (1985) 10.10
A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res (1990) 8.52
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics (1995) 7.19
Evolution of gene expression in the Drosophila melanogaster subgroup. Nat Genet (2003) 6.60
Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases. Mol Biol Evol (1992) 5.99
Likelihood-based tests of topologies in phylogenetics. Syst Biol (2000) 4.34
Molecular phylogeny and divergence times of drosophilid species. Mol Biol Evol (1995) 4.33
Recovering evolutionary trees under a more realistic model of sequence evolution. Mol Biol Evol (1994) 4.07
Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences. Proc R Soc Lond B Biol Sci (1976) 3.72
The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction. Syst Appl Microbiol (1989) 3.70
Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster. Genetics (1996) 3.00
A nonhyperthermophilic common ancestor to extant life forms. Science (1999) 2.97
High and low annealing temperatures increase both specificity and yield in touchdown and stepdown PCR. Biotechniques (1996) 2.63
Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst Biol (1997) 2.56
Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. Mol Biol Evol (1998) 2.39
Vectorette PCR: a novel approach to genomic walking. PCR Methods Appl (1991) 2.21
Rates and patterns of scnDNA and mtDNA divergence within the Drosophila melanogaster subgroup. Genetics (1988) 2.06
Comparative evolutionary analysis of rDNA ITS regions in Drosophila. Mol Biol Evol (1994) 1.94
Evolutionary novelties in islands: Drosophila santomea, a new melanogaster sister species from São Tomé. Proc Biol Sci (2000) 1.85
Maximum-likelihood phylogenetic analysis under a covarion-like model. Mol Biol Evol (2001) 1.79
Mitochondrial DNA evolution in the melanogaster species subgroup of Drosophila. J Mol Evol (1986) 1.77
Inferring phylogenies from DNA sequences of unequal base compositions. Proc Natl Acad Sci U S A (1995) 1.60
The molecular evolution of the alcohol dehydrogenase and alcohol dehydrogenase-related genes in the Drosophila melanogaster species subgroup. Mol Biol Evol (1994) 1.58
Rates of synonymous substitution and base composition of nuclear genes in Drosophila. Genetics (1992) 1.57
Substitutional bias confounds inference of cyanelle origins from sequence data. J Mol Evol (1992) 1.47
Early branchings in the evolution of eukaryotes: ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data. J Mol Evol (1993) 1.47
Biochemical phylogeny of the eight species in the Drosophila melanogaster subgroup, including D. sechellia and D. orena. Genet Res (1987) 1.41
Molecular phylogeny of Dictyostelium discoideum by protein sequence comparison. Proc Natl Acad Sci U S A (1990) 1.34
Local recombination and mutation effects on molecular evolution in Drosophila. Genetics (1999) 1.26
Tests of applicability of several substitution models for DNA sequence data. Mol Biol Evol (1995) 1.24
Local changes in GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes. Mol Biol Evol (2001) 1.21
Multiple lineages of R1 retrotransposable elements can coexist in the rDNA loci of Drosophila. Mol Biol Evol (2001) 1.15
Hsp70 duplication in the Drosophila melanogaster species group: how and when did two become five? Mol Biol Evol (2001) 1.13
DNA microenvironments and the molecular clock. J Mol Evol (1989) 1.12
Molecular evolution of the ocnus and janus genes in the Drosophila melanogaster species subgroup. Mol Biol Evol (2001) 1.11
Molecular phylogeny of Drosophila based on ribosomal RNA sequences. J Mol Evol (1993) 1.10
A molecular phylogeny for the Drosophila melanogaster subgroup and the problem of polymorphism data. Mol Biol Evol (1996) 1.10
Evolution of the Gypsy endogenous retrovirus in the Drosophila melanogaster subgroup. Mol Biol Evol (2000) 1.06
Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae. Mol Biol Evol (2001) 1.01
Phylogeny of the Oriental Drosophila melanogaster species group: a multilocus reconstruction. Syst Biol (2002) 0.99
Phylogenetic utility of mitochondrial COI and nuclear Gpdh genes in Drosophila. Mol Phylogenet Evol (2001) 0.97
Removal of microsatellite interruptions by DNA replication slippage: phylogenetic evidence from Drosophila. Mol Biol Evol (2000) 0.94
The distribution of satellite and main-band DNA components in the melanogaster species subgroup of Drosophila. I. Fractionation of DNA in actinomycin D and distamycin A density gradients. Chromosoma (1978) 0.93
Evolution of the copia retrotransposon in the Drosophila melanogaster species subgroup. Mol Biol Evol (1998) 0.93
Changes in the recombinational environment affect divergence in the yellow gene of Drosophila. Mol Biol Evol (2001) 0.91
Molecular phylogeny of the subgenus Sophophora of Drosophila derived from large subunit of ribosomal RNA sequences. Genetica (1991) 0.89
Amylase gene duplication: an ancestral trait in the Drosophila melanogaster species subgroup. Heredity (Edinb) (1987) 0.87
Correlated evolution of the cis-acting regulatory elements and developmental expression of the Drosophila Gld gene in seven species from the subgroup melanogaster. Dev Genet (1994) 0.85
THE LIMITS OF AMINO ACID SEQUENCE DATA IN ANGIOSPERM PHYLOGENETIC RECONSTRUCTION. Evolution (1988) 0.83
Developmental variability of metallothionein Mtn gene expression in the species of the Drosophila melanogaster subgroup. Dev Genet (1995) 0.82
Molecular evolution of the Amy multigenes in the subgenus Sophophora of Drosophila. Mol Biol Evol (1997) 0.82
A phylogeny of the Drosophilidae using the sex-behaviour gene fruitless. Hereditas (2000) 0.81
Mitochondrial DNA sequence divergence in the Melanogaster and oriental species subgroups of Drosophila. J Mol Evol (1991) 0.80
Functional constraints of the Cu,Zn superoxide dismutase in species of the Drosophila melanogaster subgroup and phylogenetic analysis. J Mol Evol (2002) 0.80
Molecular evolution of the histone 3 multigene family in the Drosophila melanogaster species subgroup. Mol Phylogenet Evol (2000) 0.79
Molecular evolution of the 5'-flanking regions of the duplicated Amy genes in Drosophila melanogaster species subgroup. Mol Biol Evol (1996) 0.78
Transplantation of nuclei between eggs of different species ofDrosophila. Wilehm Roux Arch Dev Biol (1975) 0.75
GENETIC DIFFERENTIATION WITHIN THE MELANOGASTER SPECIES GROUP OF THE GENUS DROSOPHILA (SOPHOPHORA). Evolution (1979) 0.75
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
A cardiac myosin binding protein C mutation in the Maine Coon cat with familial hypertrophic cardiomyopathy. Hum Mol Genet (2005) 1.32
Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome C oxidase complex. Mol Biol Evol (2011) 1.24
A role for Toll-like receptor 3 variants in host susceptibility to enteroviral myocarditis and dilated cardiomyopathy. J Biol Chem (2010) 1.11
Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae? J Mol Evol (2008) 1.07
Strong regional heterogeneity in base composition evolution on the Drosophila X chromosome. Genetics (2006) 0.83
Clinical orthopedic examination findings in the lower extremity: correlation with imaging studies and diagnostic efficacy. Radiographics (2014) 0.79
Clinical orthopedic examination findings in the upper extremity: correlation with imaging studies and diagnostic efficacy. Radiographics (2014) 0.77
Root Cause Analysis: An Examination of Odontogenic Origins of Acute Maxillary Sinusitis in Both Immunocompetent & Immunocompromised Patients. J Comput Assist Tomogr (2016) 0.75