Published in Biophys Chem on February 15, 2004
A localized specific interaction alters the unfolding pathways of structural homologues. J Am Chem Soc (2006) 0.84
Sensitivity of core-level spectroscopy to electrostatic environments of nitrile groups: An ab initio study. Struct Dyn (2017) 0.75
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
Highly selective tuning of a silkworm olfactory receptor to a key mulberry leaf volatile. Curr Biol (2009) 2.40
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res (2007) 2.07
Structural studies of haemoglobin from pisces species shortfin mako shark (Isurus oxyrinchus) at 1.9 Å resolution. J Synchrotron Radiat (2013) 1.99
Odorant receptor map in the mouse olfactory bulb: in vivo sensitivity and specificity of receptor-defined glomeruli. Neuron (2006) 1.87
Structural basis for a broad but selective ligand spectrum of a mouse olfactory receptor: mapping the odorant-binding site. J Neurosci (2005) 1.86
Classification of protein-DNA complexes based on structural descriptors. Structure (2006) 1.71
Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes. Gene (2005) 1.46
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network. BMC Struct Biol (2007) 1.45
Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins. J Comput Chem (2004) 1.33
t-3-Isopropyl-1-methyl-r-2,c-6-diphenylpiperidin-4-one thiosemicarbazone. Acta Crystallogr C (2003) 1.33
Ethyl 2-[N-(2-formyl-phen-yl)benzene-sulfonamido]acetate. Acta Crystallogr Sect E Struct Rep Online (2009) 1.31
Benzamide-picric acid (1/1). Acta Crystallogr Sect E Struct Rep Online (2010) 1.23
Distinct transcriptional regulatory modules underlie STAT3's cell type-independent and cell type-specific functions. Nucleic Acids Res (2013) 1.21
N-Butyl-pyridine-4-thio-carboxamide. Acta Crystallogr Sect E Struct Rep Online (2007) 1.20
4-(2,4-Dichlorophenyl)-2-(1H-indol-3-yl)-6-(2-pyridyl)-1,4-dihydropyridine-4-carbonitrile. Acta Crystallogr Sect E Struct Rep Online (2008) 1.18
Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns. Bioinformatics (2006) 1.18
Sequence-dependent conformational energy of DNA derived from molecular dynamics simulations: toward understanding the indirect readout mechanism in protein-DNA recognition. J Am Chem Soc (2005) 1.18
A simple statistical method for discriminating outer membrane proteins with better accuracy. Bioinformatics (2004) 1.17
TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles. Comput Biol Chem (2008) 1.17
(Benzyl-amine)chloridobis(ethane-1,2-diamine)cobalt(III) dichloride hemihydrate. Acta Crystallogr Sect E Struct Rep Online (2009) 1.15
Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals. Nucleic Acids Res (2005) 1.15
Structure of antischistosome compounds. III. (3-Cyanopropyl)triphenylphosphonium bromide. Acta Crystallogr C (1988) 1.12
3'-Benz-yloxy-3-hydr-oxy-3,3'-bi-1H-indole-2,2'(3H,3'H)-dione monohydrate. Acta Crystallogr Sect E Struct Rep Online (2009) 1.08
uORFs, reinitiation and alternative translation start sites in human mRNAs. FEBS Lett (2008) 1.07
4-Amino-pyridinium picrate. Acta Crystallogr Sect E Struct Rep Online (2010) 1.07
Discrimination of outer membrane proteins using support vector machines. Bioinformatics (2005) 1.07
TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins. Nucleic Acids Res (2005) 1.06
Pivotal function for cytoplasmic protein FROUNT in CCR2-mediated monocyte chemotaxis. Nat Immunol (2005) 1.04
A statistical model for predicting protein folding rates from amino acid sequence with structural class information. J Chem Inf Model (2005) 1.02
Average assignment method for predicting the stability of protein mutants. Biopolymers (2006) 1.02
Prediction and evolutionary information analysis of protein solvent accessibility using multiple linear regression. Proteins (2005) 1.01
4-(2,4-Dichlorophenyl)-2-(1H-indol-3-yl)-6-methoxypyridine-3,5-dicarbonitrile. Acta Crystallogr Sect E Struct Rep Online (2008) 0.99
(E)-N-Benzyl-idene-4H-1,2,4-triazol-4-amine. Acta Crystallogr Sect E Struct Rep Online (2010) 0.99
Prediction of protein mutant stability using classification and regression tool. Biophys Chem (2006) 0.99
1-Acetyl-c-3,t-3-dimethyl-r-2,c-6-diphenyl-piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online (2009) 0.99
SVM-Cabins: prediction of solvent accessibility using accumulation cutoff set and support vector machine. Proteins (2007) 0.98
9,9-Dimethoxy-7,11-diphenyl-2,4-diazaspiro[5.5]undecane-1,3,5-trione monohydrate. Acta Crystallogr C (2002) 0.98
Structural analysis of cation-pi interactions in DNA binding proteins. Int J Biol Macromol (2004) 0.97
Systematic study on crystal-contact engineering of diphthine synthase: influence of mutations at crystal-packing regions on X-ray diffraction quality. Acta Crystallogr D Biol Crystallogr (2008) 0.96
1-Chloro-acetyl-2,6-bis-(2-chloro-phen-yl)-3,5-dimethyl-piperidin-4-one oxime. Acta Crystallogr Sect E Struct Rep Online (2010) 0.96
2-Amino-pyridinium picrate. Acta Crystallogr Sect E Struct Rep Online (2010) 0.96
GRIFFIN: a system for predicting GPCR-G-protein coupling selectivity using a support vector machine and a hidden Markov model. Nucleic Acids Res (2005) 0.94
2-(1,2,3,4-Tetra-hydro-9H-carbazol-1-yl-idene)propane-dinitrile. Acta Crystallogr Sect E Struct Rep Online (2010) 0.94
Structure of antischistosome compounds. IV. (3-Bromopropyl)triphenylphosphonium bromide. Acta Crystallogr C (1988) 0.94
Methyl 4-(3-eth-oxy-4-hydroxy-phen-yl)-6-methyl-2-oxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate monohydrate. Acta Crystallogr Sect E Struct Rep Online (2009) 0.94
Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks. BMC Struct Biol (2009) 0.93
Crystallization of sheep (Ovis aries) and goat (Capra hircus) haemoglobins under unbuffered low-salt conditions. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.93
1-Benzoyl-c-3,t-3-dimethyl-r-2,c-6-diphenyl-piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online (2009) 0.93
Importance of native-state topology for determining the folding rate of two-state proteins. J Chem Inf Comput Sci (2003) 0.92
1-(2,4-Dinitro-phen-yl)-5-ferrocenyl-3-methyl-1H-pyrazole. Acta Crystallogr Sect E Struct Rep Online (2008) 0.92
Discrimination of outer membrane proteins using machine learning algorithms. Proteins (2006) 0.92
Prediction of dinucleotide-specific RNA-binding sites in proteins. BMC Bioinformatics (2011) 0.91
2-Chloro-1-(2,4,4-trimethyl-2,3,4,5-tetra-hydro-1H-1,5-benzodiazepin-1-yl)ethanone. Acta Crystallogr Sect E Struct Rep Online (2013) 0.91
Role of amino acid properties to determine backbone tau(N-Calpha-C') stretching angle in peptides and proteins. Biophys Chem (2005) 0.90
c-3,t-3-Dimethyl-r-2,c-7-diphenyl-1,4-diazepan-5-one. Acta Crystallogr Sect E Struct Rep Online (2009) 0.89
TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences. Nucleic Acids Res (2006) 0.89
4-(4-Bromo-phen-yl)-6-(1H-indol-3-yl)-2,2'-bipyridine-5-carbonitrile. Acta Crystallogr Sect E Struct Rep Online (2009) 0.88
5,7-Bis(1-benzothio-phen-2-yl)-2,3-dihydro-thieno[3,4-b][1,4]dioxine. Acta Crystallogr Sect E Struct Rep Online (2008) 0.88
4-(2,4-Dichloro-phen-yl)-6-(1H-indol-3-yl)-2,2'-bipyridine-5-carbonitrile. Acta Crystallogr Sect E Struct Rep Online (2009) 0.88
Ethyl 1-(4-chloro-phen-yl)-3-[1-(4-meth-oxy-phen-yl)-4-oxo-3-phenyl-azetidin-2-yl]-2-nitro-2,3,10,10a-tetra-hydro-1H,5H-pyr-rolo[1,2-b]isoquinoline-10a-carboxyl-ate. Acta Crystallogr Sect E Struct Rep Online (2008) 0.88
Look-up tables for protein solvent accessibility prediction and nearest neighbor effect analysis. Biopolymers (2004) 0.88
PROCARB: A Database of Known and Modelled Carbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools. Adv Bioinformatics (2010) 0.87
Automatic gene collection system for genome-scale overview of G-protein coupled receptors in eukaryotes. Gene (2005) 0.87
1-Dichloro-acetyl-t-3,t-5-dimethyl-r-2,c-6-diphenyl-piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online (2013) 0.87
Context dependent reference states of solvent accessibility derived from native protein structures and assessed by predictability analysis. BMC Struct Biol (2009) 0.86
Dichloridobis(1-ethyl-2,6-dimethyl-pyridinium-4-olate-κO)zinc(II). Acta Crystallogr Sect E Struct Rep Online (2010) 0.86
5-Chloro-acetyl-4-methyl-2,3,4,5-tetra-hydro-1H-1,5-benzodiazepin-2-one. Acta Crystallogr Sect E Struct Rep Online (2009) 0.86
4-Methyl-2-oxo-2,3,4,5-tetra-hydro-1H-1,5-benzodiazepine-5-carbaldehyde. Acta Crystallogr Sect E Struct Rep Online (2009) 0.86
Purification, crystallization and preliminary crystallographic study of low oxygen-affinity haemoglobin from cat (Felis silvestris catus) in two different crystal forms. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.86
Exploring the evolutionary rate differences of party hub and date hub proteins in Saccharomyces cerevisiae protein-protein interaction network. Gene (2008) 0.86
1-Chloro-acetyl-3-isopropyl-r-2,c-6-diphenyl-piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online (2010) 0.86
1,1'-[4-(4-Methoxy-phen-yl)-2,6-dimethyl-1,4-dihydro-pyridine-3,5-di-yl]diethanone. Acta Crystallogr Sect E Struct Rep Online (2009) 0.86
Influence of amino acid properties for discriminating outer membrane proteins at better accuracy. Biochim Biophys Acta (2006) 0.86
Solvent accessibility in native and isolated domain environments: general features and implications to interface predictability. Biophys Chem (2004) 0.85
Current developments on beta-barrel membrane proteins: sequence and structure analysis, discrimination and prediction. Curr Protein Pept Sci (2007) 0.85
Distribution of amino acid residues and residue-residue contacts in molecular chaperones. Prep Biochem Biotechnol (2001) 0.85
2,2,4-Trimethyl-5-(4-tolyl-sulfon-yl)-2,3,4,5-tetra-hydro-1H-1,5-benzo-diazepine. Acta Crystallogr Sect E Struct Rep Online (2009) 0.85
Application of residue distribution along the sequence for discriminating outer membrane proteins. Comput Biol Chem (2005) 0.85
5-Dichloro-acetyl-4-methyl-2,3,4,5-tetra-hydro-1H-1,5-benzodiazepin-2-one hemihydrate. Acta Crystallogr Sect E Struct Rep Online (2009) 0.85
TMFunction: database for functional residues in membrane proteins. Nucleic Acids Res (2008) 0.85
8,9-Dimeth-oxy-5-phenyl-sulfonyl-5H-benzo[b]carbazole. Acta Crystallogr Sect E Struct Rep Online (2010) 0.84
Residue propensities, discrimination and binding site prediction of adenine and guanine phosphates. BMC Biochem (2011) 0.84
c-3,t-3-Dimethyl-r-2,c-6-diphenyl-piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online (2009) 0.83
Enzymology and folding of natural and engineered bacterial beta-glucanases studied by X-ray crystallography. Biol Chem (1997) 0.83
2-Amino-5-chloro-pyridinium 4-amino-benzoate. Acta Crystallogr Sect E Struct Rep Online (2012) 0.83
On nucleotide solvent accessibility in RNA structure. Gene (2010) 0.83
Relative importance of secondary structure and solvent accessibility to the stability of protein mutants. A case study with amino acid properties and energetics on T4 and human lysozymes. Comput Biol Chem (2005) 0.82
1'-Methyl-2,2''-dioxoindoline-3-spiro-2'-pyrrolidine-3'-spiro-3''-indoline-4',4'-di-carbonitrile. Acta Crystallogr Sect E Struct Rep Online (2009) 0.82
Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins. Nucleic Acids Res (2013) 0.82
Purification, characterization and crystallization of an extracellular alkaline protease from Aspergillus nidulans HA-10. J Basic Microbiol (2008) 0.82
Modeling the three-dimensional structures of an unbound single-chain variable fragment (scFv) and its hypothetical complex with a Corynespora cassiicola toxin, cassiicolin. J Mol Model (2010) 0.81
Atom-wise statistics and prediction of solvent accessibility in proteins. Biophys Chem (2006) 0.81