Published in J Struct Biol on June 01, 2004
Image processing for electron microscopy single-particle analysis using XMIPP. Nat Protoc (2008) 4.90
A clustering approach to multireference alignment of single-particle projections in electron microscopy. J Struct Biol (2010) 2.19
Modeling experimental image formation for likelihood-based classification of electron microscopy data. Structure (2007) 1.74
Structural analysis of macromolecular assemblies by electron microscopy. Chem Rev (2011) 1.19
Cryo-EM image alignment based on nonuniform fast Fourier transform. Ultramicroscopy (2008) 1.02
Multiclass maximum-likelihood symmetry determination and motif reconstruction of 3-D helical objects from projection images for electron microscopy. IEEE Trans Image Process (2011) 0.80
Single-particle reconstruction using L(2)-gradient flow. J Struct Biol (2011) 0.79
Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL. J Synchrotron Radiat (2017) 0.75
3D electron microscopy of biological nanomachines: principles and applications. Eur Biophys J (2007) 0.75
A pyramid approach to subpixel registration based on intensity. IEEE Trans Image Process (1998) 12.57
Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry A (2004) 8.65
XMIPP: a new generation of an open-source image processing package for electron microscopy. J Struct Biol (2004) 4.95
Optimization of mutual information for multiresolution image registration. IEEE Trans Image Process (2000) 2.60
Molecular substructure of a viral receptor-recognition protein. The gp17 tail-fiber of bacteriophage T7. J Mol Biol (1988) 2.59
Nonsmooth nonnegative matrix factorization (nsNMF). IEEE Trans Pattern Anal Mach Intell (2006) 2.51
Interpolation revisited. IEEE Trans Med Imaging (2000) 2.37
Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy. Biomech Model Mechanobiol (2011) 2.34
A clustering approach to multireference alignment of single-particle projections in electron microscopy. J Struct Biol (2010) 2.19
Sequence-related protein export NTPases encoded by the conjugative transfer region of RP4 and by the cag pathogenicity island of Helicobacter pylori share similar hexameric ring structures. Proc Natl Acad Sci U S A (2000) 1.98
Classification of images of biomolecular assemblies: a study of ribosomes and ribosomal subunits of Escherichia coli. J Microsc (1988) 1.88
3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs). Ultramicroscopy (1998) 1.78
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree. J Mol Evol (1997) 1.71
Integrating electron microscopy information into existing Distributed Annotation Systems. J Struct Biol (2007) 1.69
Unwarping of unidirectionally distorted EPI images. IEEE Trans Med Imaging (2000) 1.67
General morphology and capsid fine structure of African swine fever virus particles. Virology (1984) 1.52
Purification and organization of the gene 1 portal protein required for phage P22 DNA packaging. Biochemistry (1988) 1.50
Xmipp 3.0: an improved software suite for image processing in electron microscopy. J Struct Biol (2013) 1.47
Large T-antigen double hexamers imaged at the simian virus 40 origin of replication. Mol Cell Biol (2000) 1.42
Spectral signal-to-noise ratio and resolution assessment of 3D reconstructions. J Struct Biol (2005) 1.41
A structural model for the Escherichia coli DnaB helicase based on electron microscopy data. J Struct Biol (1995) 1.39
A novel neural network technique for analysis and classification of EM single-particle images. J Struct Biol (2001) 1.37
Bacteriophage T3 connector: three-dimensional structure and comparison with other viral head-tail connecting regions. J Mol Biol (1988) 1.34
Pattern recognition and classification of images of biological macromolecules using artificial neural networks. Biophys J (1994) 1.31
Three-dimensional reconstruction of the connector of bacteriophage phi 29 at 1.8 nm resolution. J Mol Biol (1986) 1.31
A fast thresholded landweber algorithm for wavelet-regularized multidimensional deconvolution. IEEE Trans Image Process (2008) 1.30
Six molecules of SV40 large T antigen assemble in a propeller-shaped particle around a channel. J Mol Biol (1997) 1.24
Cryo-negative staining reduces electron-beam sensitivity of vitrified biological particles. J Struct Biol (2002) 1.21
Marker-free image registration of electron tomography tilt-series. BMC Bioinformatics (2009) 1.18
Snakuscules. IEEE Trans Image Process (2008) 1.17
Magnification mismatches between micrographs: corrective procedures and implications for structural analysis. Ultramicroscopy (1992) 1.17
3-D PSF fitting for fluorescence microscopy: implementation and localization application. J Microsc (2012) 1.16
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. Structure (1998) 1.15
The RepA protein of plasmid RSF1010 is a replicative DNA helicase. J Biol Chem (1997) 1.15
The effect of overabundant projection directions on 3D reconstruction algorithms. J Struct Biol (2001) 1.14
Computer graphic display method for visualizing three-dimensional biological structures. Science (1986) 1.14
Realistic analytical phantoms for parallel magnetic resonance imaging. IEEE Trans Med Imaging (2011) 1.12
Three-dimensional structure of T3 connector purified from overexpressing bacteria. J Mol Biol (1992) 1.12
The three-dimensional structure of a DNA translocating machine at 10 A resolution. Structure (1999) 1.11
A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment. Ultramicroscopy (2003) 1.09
Statistical analysis of functional MRI data in the wavelet domain. IEEE Trans Med Imaging (1998) 1.08
The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel. EMBO J (2001) 1.07
Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function. J Struct Biol (2007) 1.04
A fast wavelet-based reconstruction method for magnetic resonance imaging. IEEE Trans Med Imaging (2011) 1.03
Mapping and fuzzy classification of macromolecular images using self-organizing neural networks. Ultramicroscopy (2000) 1.02
Normalizing projection images: a study of image normalizing procedures for single particle three-dimensional electron microscopy. Ultramicroscopy (2004) 1.02
Three-dimensional reconstruction of the ribosome from Escherichia coli. Biophys J (1989) 1.01
Optimal control of walking with functional electrical stimulation: a computer simulation study. IEEE Trans Rehabil Eng (1999) 0.99
Fast wavelet transformation of EEG. Electroencephalogr Clin Neurophysiol (1994) 0.99
Three-dimensional reconstruction of bacteriophage phi 29 neck particles at 2 X 2 nm resolution. J Mol Biol (1985) 0.98
Unsupervised connectivity-based thresholding segmentation of midsagittal brain MR images. Comput Biol Med (1998) 0.97
Aging studies on normal lens using the Scheimpflug slit-lamp camera. Invest Ophthalmol Vis Sci (1993) 0.96
Automatic particle selection from electron micrographs using machine learning techniques. J Struct Biol (2009) 0.96
A framework for querying a database for structural information on 3D images of macromolecules: A web-based query-by-content prototype on the BioImage macromolecular server. J Struct Biol (1999) 0.96
Three-dimensional reconstruction of the sevenfolded form of Bacillus subtilis Gro EL Chaperonin. J Struct Biol (1991) 0.94
Bacteriophage T3 gene 8 product oligomer structure. J Ultrastruct Mol Struct Res (1986) 0.93
B-spline snakes: a flexible tool for parametric contour detection. IEEE Trans Image Process (2000) 0.92
Transfer function restoration in 3D electron microscopy via iterative data refinement. Phys Med Biol (2004) 0.91
Polymorphic quaternary organization of the Bacillus subtilis bacteriophage SPP1 replicative helicase (G40 P). J Mol Biol (1998) 0.91
Structural localization of the proteins of the head to tail connecting region of bacteriophage phi 29. Virology (1983) 0.91
Designing and executing scientific workflows with a programmable integrator. Bioinformatics (2004) 0.89
Autonomous and self-sustained circadian oscillators displayed in human islet cells. Diabetologia (2012) 0.89
Spline-based image-to-volume registration for three-dimensional electron microscopy. Ultramicroscopy (2005) 0.89
Two-step demodulation based on the Gram-Schmidt orthonormalization method. Opt Lett (2012) 0.89
FASTDEF: fast defocus and astigmatism estimation for high-throughput transmission electron microscopy. J Struct Biol (2012) 0.88
Structure of phage phi 29 connector protein assembled in vivo. Virology (1985) 0.88
Optimal background estimation in EELS. J Microsc (1987) 0.88
Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs. J Struct Biol (2008) 0.87
A new non-crystallographic image-processing technique reveals the architecture of ribosomes. Trends Biochem Sci (1988) 0.87
Interactions between actin and myosin filaments in skeletal muscle visualized in frozen-hydrated thin sections. Biophys J (1989) 0.86
Laser Doppler imaging for intraoperative human brain mapping. Neuroimage (2008) 0.86
Restoration of direct Fourier three-dimensional reconstructions of crystalline specimens by the method of convex projections. J Microsc (1987) 0.86
Chronic inhalation studies of two types of stone wool fibers in rats. Inhal Toxicol (2001) 0.85
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs. Bioinformatics (2013) 0.85
Helicases as nucleic acid unwinding machines. Nat Struct Biol (2000) 0.85
Non-rigid consistent registration of 2D image sequences. Phys Med Biol (2010) 0.84
pH-controlled quaternary states of hexameric DnaB helicase. J Mol Biol (2000) 0.83
Appearance of the bona fide spiral tubule of ORF virus is dependent on an intact 10-kilodalton viral protein. J Virol (2004) 0.83
Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques. J Struct Biol (2013) 0.83
Distribution and attachment of Trypanosoma (Nannomonas) congolense in the proximal part of the proboscis of Glossina morsitans morsitans. Acta Trop (1980) 0.83
Computerized cataract detection and classification. Curr Eye Res (1990) 0.82
Two-step interferometry by a regularized optical flow algorithm. Opt Lett (2011) 0.82
Minimum views required to characterize cataracts when using the Scheimpflug camera. Graefes Arch Clin Exp Ophthalmol (1993) 0.82
Odd men out: a quantitative objective procedure for identifying anomalous members of a set of noisy images of ostensibly identical specimens. Ultramicroscopy (1986) 0.81
MOMS: maximal-order interpolation of minimal support. IEEE Trans Image Process (2001) 0.81
Quantitative morphometrical characterization of human pronuclear zygotes. Hum Reprod (2008) 0.81
Volumetric restrictions in single particle 3DEM reconstruction. Pattern Recognit (2008) 0.80
The need for a shared database infrastructure: combining X-ray crystallography and electron microscopy. Eur Biophys J (2000) 0.78
An Optimized Spline-Based Registration of a 3D CT to a Set of C-Arm Images. Int J Biomed Imaging (2006) 0.78