Published in Proteins on May 15, 2004
SAM-T08, HMM-based protein structure prediction. Nucleic Acids Res (2009) 1.82
Applying undertaker cost functions to model quality assessment. Proteins (2009) 1.23
Solvent accessible surface area approximations for rapid and accurate protein structure prediction. J Mol Model (2009) 1.14
PREDICT-2ND: a tool for generalized protein local structure prediction. Bioinformatics (2008) 1.10
Better prediction of protein contact number using a support vector regression analysis of amino acid sequence. BMC Bioinformatics (2005) 1.08
Optimal contact definition for reconstruction of contact maps. BMC Bioinformatics (2010) 1.02
Local protein structure prediction using discriminative models. BMC Bioinformatics (2006) 0.95
Molecular requirements for sorting of the chemokine interleukin-8/CXCL8 to endothelial Weibel-Palade bodies. J Biol Chem (2009) 0.86
Improving computational protein design by using structure-derived sequence profile. Proteins (2010) 0.86
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps. BMC Bioinformatics (2006) 0.81
Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys. BMC Struct Biol (2008) 0.80
Defining and predicting structurally conserved regions in protein superfamilies. Bioinformatics (2012) 0.79
eVolver: an optimization engine for evolving protein sequences to stabilize the respective structures. BMC Res Notes (2013) 0.77
Enhancement of E. coli acyl-CoA synthetase FadD activity on medium chain fatty acids. PeerJ (2015) 0.76
Characterization and Prediction of Protein Flexibility Based on Structural Alphabets. Biomed Res Int (2016) 0.75
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol (2011) 28.61
NetAffx: Affymetrix probesets and annotations. Nucleic Acids Res (2003) 14.37
Nova regulates brain-specific splicing to shape the synapse. Nat Genet (2005) 6.58
Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision. Nat Biotechnol (2012) 5.71
Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8. Proteins (2009) 4.27
Gene structure-based splice variant deconvolution using a microarray platform. Bioinformatics (2003) 2.97
Classifying G-protein coupled receptors with support vector machines. Bioinformatics (2002) 2.54
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinformatics (2006) 2.37
The UCSC Cancer Genomics Browser: update 2013. Nucleic Acids Res (2012) 2.18
Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry. Proteins (2003) 1.84
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy. Neuron (2012) 1.78
Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands. Proc Natl Acad Sci U S A (2013) 1.75
Contact prediction using mutual information and neural nets. Proteins (2007) 1.74
Identification and characterization of RbmA, a novel protein required for the development of rugose colony morphology and biofilm structure in Vibrio cholerae. J Bacteriol (2006) 1.74
A knowledge-based clustering algorithm driven by Gene Ontology. J Biopharm Stat (2004) 1.59
Predicting reliable regions in protein sequence alignments. Bioinformatics (2002) 1.34
Applying undertaker cost functions to model quality assessment. Proteins (2009) 1.23
Splicing biomarkers of disease severity in myotonic dystrophy. Ann Neurol (2013) 1.22
Model quality assessment using distance constraints from alignments. Proteins (2009) 1.12
PREDICT-2ND: a tool for generalized protein local structure prediction. Bioinformatics (2008) 1.10
Information-theoretic dissection of pairwise contact potentials. Proteins (2002) 1.08
Improving protein secondary structure prediction using a simple k-mer model. Bioinformatics (2010) 0.93
Identification of prokaryotic small proteins using a comparative genomic approach. Bioinformatics (2011) 0.89
Complete genome sequence of Pyrobaculum oguniense. Stand Genomic Sci (2012) 0.87
Identification of a chemoreceptor zinc-binding domain common to cytoplasmic bacterial chemoreceptors. J Bacteriol (2011) 0.85
DATA SHARING AND REPRODUCIBLE CLINICAL GENETIC TESTING: SUCCESSES AND CHALLENGES. Pac Symp Biocomput (2016) 0.81
Applying Undertaker to quality assessment. Proteins (2009) 0.79
Pokefind: a novel topological filter for use with protein structure prediction. Bioinformatics (2009) 0.78
Methods of translating NMR proton distances into their corresponding heavy atom distances for protein structure prediction with limited experimental data. Protein Eng Des Sel (2005) 0.76
GPCR-GRAPA-LIB--a refined library of hidden Markov Models for annotating GPCRs. Bioinformatics (2003) 0.75