Published in Genome Res on May 01, 2004
Ensembl 2007. Nucleic Acids Res (2006) 20.10
Ensembl 2005. Nucleic Acids Res (2005) 15.13
An overview of Ensembl. Genome Res (2004) 10.35
BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics (2010) 9.30
JBrowse: a next-generation genome browser. Genome Res (2009) 6.77
Visualizing genomes: techniques and challenges. Nat Methods (2010) 6.66
Anopheles gambiae immune responses to human and rodent Plasmodium parasite species. PLoS Pathog (2006) 4.67
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. Nucleic Acids Res (2006) 3.40
Ensembl variation resources. BMC Genomics (2010) 3.17
A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells. Proc Natl Acad Sci U S A (2005) 2.35
Indexing strategies for rapid searches of short words in genome sequences. PLoS One (2007) 1.85
Visualizing next-generation sequencing data with JBrowse. Brief Bioinform (2012) 1.70
Anopheles fibrinogen-related proteins provide expanded pattern recognition capacity against bacteria and malaria parasites. J Biol Chem (2009) 1.65
Genome Maps, a new generation genome browser. Nucleic Acids Res (2013) 1.33
Design and implementation of a library-based information service in molecular biology and genetics at the University of Pittsburgh. J Med Libr Assoc (2006) 1.25
Recognition of atypical 5' splice sites by shifted base-pairing to U1 snRNA. Nat Struct Mol Biol (2009) 1.16
A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter. Genes (Basel) (2012) 1.16
JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biol (2016) 1.09
Open source libraries and frameworks for biological data visualisation: a guide for developers. Proteomics (2015) 1.00
A genomic glimpse of aminoacyl-tRNA synthetases in malaria parasite Plasmodium falciparum. BMC Genomics (2009) 0.97
Genomic identification of regulatory elements by evolutionary sequence comparison and functional analysis. Adv Genet (2008) 0.96
ContigScape: a Cytoscape plugin facilitating microbial genome gap closing. BMC Genomics (2013) 0.93
ChromoZoom: a flexible, fluid, web-based genome browser. Bioinformatics (2012) 0.91
Advantages of q-PCR as a method of screening for gene targeting in mammalian cells using conventional and whole BAC-based constructs. Nucleic Acids Res (2008) 0.90
The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes. Plant Methods (2009) 0.89
Comparison of methods for genomic localization of gene trap sequences. BMC Genomics (2006) 0.84
FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context. J Clin Bioinforma (2011) 0.82
RNALocate: a resource for RNA subcellular localizations. Nucleic Acids Res (2016) 0.80
Genome studies at the PAG 2011 conference. Funct Integr Genomics (2011) 0.78
STAR: an integrated solution to management and visualization of sequencing data. Bioinformatics (2013) 0.78
Detecting and comparing non-coding RNAs in the high-throughput era. Int J Mol Sci (2013) 0.78
Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers. BMC Genomics (2013) 0.77
AliquotG: an improved heuristic algorithm for genome aliquoting. PLoS One (2013) 0.76
Generation and analysis of the expressed sequence tags from the mycelium of Ganoderma lucidum. PLoS One (2013) 0.76
PGx: Putting Peptides to BED. J Proteome Res (2015) 0.75
AmalgamScope: merging annotations data across the human genome. Biomed Res Int (2014) 0.75
Seqcrawler: biological data indexing and browsing platform. BMC Bioinformatics (2012) 0.75
An Ontology-Based GIS for Genomic Data Management of Rumen Microbes. Genomics Inform (2015) 0.75
Biological database of images and genomes: tools for community annotations linking image and genomic information. Database (Oxford) (2013) 0.75
PBrowse: a web-based platform for real-time collaborative exploration of genomic data. Nucleic Acids Res (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
The human genome browser at UCSC. Genome Res (2002) 168.23
SSAHA: a fast search method for large DNA databases. Genome Res (2001) 48.64
The distributed annotation system. BMC Bioinformatics (2001) 42.98
The generic genome browser: a building block for a model organism system database. Genome Res (2002) 42.64
Database resources of the National Center for Biotechnology. Nucleic Acids Res (2003) 18.26
EnsMart: a generic system for fast and flexible access to biological data. Genome Res (2004) 17.64
The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res (2003) 15.27
The Ensembl core software libraries. Genome Res (2004) 7.30
The Ensembl analysis pipeline. Genome Res (2004) 5.90
WormBase: a cross-species database for comparative genomics. Nucleic Acids Res (2003) 5.28
The Pfam protein families database. Nucleic Acids Res (2007) 30.53
EnsMart: a generic system for fast and flexible access to biological data. Genome Res (2004) 17.64
Ensembl's 10th year. Nucleic Acids Res (2009) 10.82
An overview of Ensembl. Genome Res (2004) 10.35
The DNA sequence of the human X chromosome. Nature (2005) 6.97
A role for Dicer in immune regulation. J Exp Med (2006) 5.81
A physical map of the mouse genome. Nature (2002) 4.97
DNA methylation profiling of the human major histocompatibility complex: a pilot study for the human epigenome project. PLoS Biol (2004) 4.96
Complete protection from repeated vaginal simian-human immunodeficiency virus exposures in macaques by a topical gel containing tenofovir alone or with emtricitabine. J Virol (2009) 4.73
DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones. Genes Chromosomes Cancer (2003) 4.68
Gramene: a growing plant comparative genomics resource. Nucleic Acids Res (2007) 4.59
Oseltamivir (Tamiflu) and its potential for use in the event of an influenza pandemic. J Antimicrob Chemother (2005) 3.53
Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res (2006) 3.47
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. Nucleic Acids Res (2006) 3.40
Neuraminidase inhibitor resistance after oseltamivir treatment of acute influenza A and B in children. Clin Infect Dis (2009) 3.37
Human cerebral cortex development from pluripotent stem cells to functional excitatory synapses. Nat Neurosci (2012) 3.28
Ensembl variation resources. BMC Genomics (2010) 3.17
TranscriptSNPView: a genome-wide catalog of mouse coding variation. Nat Genet (2006) 3.10
BioMart Central Portal: an open database network for the biological community. Database (Oxford) (2011) 3.03
Gramene database in 2010: updates and extensions. Nucleic Acids Res (2010) 2.70
Randomized trial of medical or endoscopic therapy to prevent recurrent ulcer hemorrhage in patients with adherent clots. Gastroenterology (2002) 2.62
c-kit expression identifies cardiovascular precursors in the neonatal heart. Proc Natl Acad Sci U S A (2009) 2.06
Ezh2, the histone methyltransferase of PRC2, regulates the balance between self-renewal and differentiation in the cerebral cortex. Proc Natl Acad Sci U S A (2010) 1.97
A human stem cell model of early Alzheimer's disease pathology in Down syndrome. Sci Transl Med (2012) 1.95
Mechano-coupling and regulation of contractility by the vinculin tail domain. Biophys J (2007) 1.92
The level of the transcription factor Pax6 is essential for controlling the balance between neural stem cell self-renewal and neurogenesis. PLoS Genet (2009) 1.92
Mutagenic insertion and chromosome engineering resource (MICER). Nat Genet (2004) 1.88
Comparison of accuracy and safety of the SEVEN and the Navigator continuous glucose monitoring systems. Diabetes Technol Ther (2009) 1.88
Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae). Ann Bot (2003) 1.79
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. Nucleic Acids Res (2012) 1.63
Developing a scholarship community. J Nurs Scholarsh (2005) 1.61
Durable protection from vaginal simian-human immunodeficiency virus infection in macaques by tenofovir gel and its relationship to drug levels in tissue. J Virol (2011) 1.56
Complex haplotypes, copy number polymorphisms and coding variation in two recently divergent mouse strains. Nat Genet (2005) 1.42
Few smokers in South Auckland access subsidised nicotine replacement therapy. N Z Med J (2010) 1.41
Can the prevalence of diagnosed diabetes be estimated from linked national health records? The validity of a method applied in New Zealand. J Prim Health Care (2011) 1.39
A mother and daughter with a novel phenotype of hand and foot abnormalities and severe pectus excavatum. Am J Med Genet A (2013) 1.38
Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16. J Biol Chem (2002) 1.36
Genomic characterisation of a Fgf-regulated gradient-based neocortical protomap. Development (2005) 1.32
Community-driven development for computational biology at Sprints, Hackathons and Codefests. BMC Bioinformatics (2014) 1.27
Gramene QTL database: development, content and applications. Database (Oxford) (2009) 1.25
Circular fingerprints: flexible molecular descriptors with applications from physical chemistry to ADME. IDrugs (2006) 1.25
Reversible block of mouse neural stem cell differentiation in the absence of dicer and microRNAs. PLoS One (2010) 1.19
Noncoding RNAs prevent spreading of a repressive histone mark. Nat Struct Mol Biol (2013) 1.18
Science fact and the SENS agenda. What can we reasonably expect from ageing research? EMBO Rep (2005) 1.16
Advanced age is a risk factor for post-operative complications and mortality after a pancreaticoduodenectomy: a meta-analysis and systematic review. HPB (Oxford) (2012) 1.15
Axenfeld-Rieger malformation and distinctive facial features: Clues to a recognizable 6p25 microdeletion syndrome. Am J Med Genet A (2005) 1.13
A prospective study of sexual transmission of human T lymphotropic virus (HTLV)-I and HTLV-II. J Infect Dis (2005) 1.12
RNAi keeps Atf1-bound stress response genes in check at nuclear pores. Genes Dev (2012) 1.10
Safe and sustained vaginal delivery of pyrimidinedione HIV-1 inhibitors from polyurethane intravaginal rings. Antimicrob Agents Chemother (2011) 1.10
Pharmacokinetics of oseltamivir in young and very elderly subjects. Ann Pharmacother (2006) 1.10
Generation of a consensus sequence from prevalent and incident HIV-1 infections in West Africa to guide AIDS vaccine development. Virology (2002) 1.08
The Quaking family of RNA-binding proteins: coordinators of the cell cycle and differentiation. Cell Cycle (2010) 1.06
Incarcerated small bowel associated with elective abortion uterine perforation. J Emerg Med (2012) 1.06
Identification of a bifunctional UDP-4-keto-pentose/UDP-xylose synthase in the plant pathogenic bacterium Ralstonia solanacearum strain GMI1000, a distinct member of the 4,6-dehydratase and decarboxylase family. J Biol Chem (2010) 1.05
Delayed maturation of antibody avidity but not seroconversion in rhesus macaques infected with simian HIV during oral pre-exposure prophylaxis. J Acquir Immune Defic Syndr (2011) 1.05
SHIV susceptibility changes during the menstrual cycle of pigtail macaques. J Med Primatol (2014) 1.05
PMC42, a breast progenitor cancer cell line, has normal-like mRNA and microRNA transcriptomes. Breast Cancer Res (2008) 1.04
An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer. EMBO J (2011) 1.03
Postexposure protection of macaques from vaginal SHIV infection by topical integrase inhibitors. Sci Transl Med (2014) 1.03
[A novel transcutaneous vagus nerve stimulation leads to brainstem and cerebral activations measured by functional MRI]. Biomed Tech (Berl) (2008) 1.03
Reaction site mapping of xenobiotic biotransformations. J Chem Inf Model (2007) 1.00
Department of Defense influenza and other respiratory disease surveillance during the 2009 pandemic. BMC Public Health (2011) 0.96
Long-term variations in human T lymphotropic virus (HTLV)-I and HTLV-II proviral loads and association with clinical data. J Infect Dis (2006) 0.95
Training initiatives within the AFHSC-Global Emerging Infections Surveillance and Response System: support for IHR (2005). BMC Public Health (2011) 0.94
The impact of official development aid on maternal and reproductive health outcomes: a systematic review. PLoS One (2013) 0.94
A unique case of ovarian psammocarcinoma with mediastinal, pulmonary, subcutaneous, and omental metastases. Arch Gynecol Obstet (2008) 0.93
D-amino acid residues in peptides and proteins. Proteins (2003) 0.92
An intuitive graphical visualization technique for the interrogation of transcriptome data. Nucleic Acids Res (2011) 0.92
Supplementing introductory biology with on-line curriculum*. Biochem Mol Biol Educ (2004) 0.92
Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose in pathogenic fungi Magnaporthe grisea and Botryotinia fuckeliana. J Biol Chem (2011) 0.92
Antivirals for influenza in healthy adults. Lancet (2006) 0.92
Endoscopic subureteral injection is not less expensive than outpatient open reimplantation for unilateral vesicoureteral reflux. J Urol (2008) 0.91
Caffeine induces hyperacetylation of histones at the MEF2 site on the Glut4 promoter and increases MEF2A binding to the site via a CaMK-dependent mechanism. Am J Physiol Endocrinol Metab (2008) 0.91
Effect of benefits counseling services on employment outcomes for people with psychiatric disabilities. Psychiatr Serv (2006) 0.87
Tenascin-C triggers fibrin accumulation by downregulation of tissue plasminogen activator. FEBS Lett (2011) 0.87
Ensembl comparative genomics resources. Database (Oxford) (2016) 0.87
Comparative immunogenicity in rhesus monkeys of multi-protein HIV-1 (CRF02_AG) DNA/MVA vaccines expressing mature and immature VLPs. Virology (2005) 0.87
PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants. PLoS One (2012) 0.86
Photosynthetic genes are differentially transcribed during the dehydration-rehydration cycle in the resurrection plant, Xerophyta humilis. J Exp Bot (2003) 0.86
Direct evidence of vinculin tail-lipid membrane interaction in beta-sheet conformation. Biochem Biophys Res Commun (2008) 0.85
The mechanism of action of tapasin in the peptide exchange on MHC class I molecules determined from kinetics simulation studies. Mol Immunol (2009) 0.85
Microfluidic enrichment of mouse epidermal stem cells and validation of stem cell proliferation in vitro. Tissue Eng Part C Methods (2013) 0.85
Effects of the dual 5 alpha-reductase inhibitor dutasteride on apoptosis in primary cultures of prostate cancer epithelial cells and cell lines. Cancer (2006) 0.84
Correlates of perceived risk of developing cancer among African-Americans in South Los Angeles. J Community Health (2014) 0.84
Comparing perceived and test-based knowledge of cancer risk and prevention among Hispanic and African Americans: an example of community participatory research. Ethn Dis (2013) 0.84
Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data. BMC Genomics (2013) 0.84
Residential accessibility to information technology retailers and self reported computer use among patients attending community clinics. AMIA Annu Symp Proc (2009) 0.84
Global stressors on water quality and quantity. Environ Sci Technol (2008) 0.82
Recurrent torsion of a wandering spleen. Am J Surg (2004) 0.81
Raman and infrared fingerprint spectroscopy of peroxide-based explosives. Appl Spectrosc (2008) 0.81
Does bearing size influence metal ion levels in large-head metal-on-metal total hip arthroplasty? A comparison of three total hip systems. J Orthop Surg Res (2014) 0.80
Alpha-T-catenin (CTNNA3) displays tumour specific monoallelic expression in urothelial carcinoma of the bladder. Genes Chromosomes Cancer (2007) 0.79
Selective thrombocytopenia in children with Wilms tumor: an immune-mediated effect of dactinomycin? Med Pediatr Oncol (2003) 0.79
Whistleblowing: An integrative literature review of data-based studies involving nurses. Contemp Nurse (2014) 0.79
To prevent, react, and rebuild: health research and the prevention of genocide. Health Serv Res (2004) 0.78
Noncoding RNAs prevent spreading of a repressive histone mark. Nat Struct Mol Biol (2013) 0.78
Short communication: Viremic control is independent of repeated low-dose SHIVSF162p3 exposures. AIDS Res Hum Retroviruses (2014) 0.78